Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3 | 46783105 | 46789138 | chr3:46783105-46789138:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.86 |
0.93 |
0.6 |
0.21 |
0.81 |
0.88 |
0.88 |
0.88 |
0.82 |
0.84 |
0.93 |
chr3 | 50921202 | 50922670 | chr3:50921202-50922670:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | DOCK3 | 0.0 |
— | — | 0.24 |
0.67 |
0.45 |
0.22 |
0.39 |
— | 0.79 |
0.37 |
— |
chr3 | 50973137 | 50979172 | chr3:50973137-50979172:-:L1PA3:REF | L1PA3 | REF | full-length | DOCK3 | 0.24 |
0.83 |
0.94 |
0.9 |
0.05 |
0.84 |
0.91 |
0.89 |
0.91 |
0.0 |
0.84 |
0.98 |
chr3 | 51091710 | 51092830 | chr3:51091710-51092830:+:L1P3:REF | L1P3 | REF | 3prime-truncated | DOCK3 | 0.0 |
— | 0.96 |
— | 0.93 |
0.72 |
0.95 |
0.62 |
— | 0.95 |
0.75 |
0.98 |
chr3 | 51095923 | 51098075 | chr3:51095923-51098075:-:L1P3:REF | L1P3 | REF | 3prime-truncated | DOCK3 | — | — | — | — | — | — | — | — | — | — | 0.95 |
— |
chr3 | 51199048 | 51205178 | chr3:51199048-51205178:+:L1PA3:REF | L1PA3 | REF | full-length | DOCK3 | 0.01 |
0.66 |
0.82 |
0.55 |
0.89 |
0.78 |
0.74 |
0.83 |
0.94 |
0.92 |
0.8 |
0.98 |
chr3 | 51368115 | 51369569 | chr3:51368115-51369569:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | DOCK3 | 0.01 |
— | — | 0.63 |
0.82 |
0.47 |
0.08 |
0.3 |
0.91 |
0.62 |
0.58 |
0.88 |
chr3 | 51455920 | 51462098 | chr3:51455920-51462098:+:L1PA4:REF | L1PA4 | REF | full-length | DCAF1 | — | — | — | — | 0.53 |
— | — | — | — | — | 0.65 |
— |
chr3 | 53365276 | 53371325 | chr3:53365276-53371325:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.56 |
0.23 |
0.94 |
0.94 |
0.13 |
0.88 |
0.93 |
0.92 |
0.89 |
0.39 |
0.94 |
0.97 |
chr3 | 53391155 | 53397284 | chr3:53391155-53397284:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.45 |
— |
chr3 | 53440758 | 53446902 | chr3:53440758-53446902:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
— | — | 0.35 |
0.7 |
0.59 |
0.8 |
0.48 |
— | 0.73 |
0.6 |
0.7 |
chr3 | 53921747 | 53927805 | chr3:53921747-53927805:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.55 |
0.95 |
0.0 |
0.03 |
0.88 |
0.53 |
0.88 |
0.94 |
0.01 |
0.86 |
0.47 |
chr3 | 54284955 | 54291072 | chr3:54284955-54291072:+:L1PA4:REF | L1PA4 | REF | full-length | CACNA2D3 | 0.01 |
0.96 |
0.97 |
0.89 |
0.95 |
0.85 |
0.68 |
0.82 |
0.97 |
0.93 |
0.76 |
0.89 |
chr3 | 54394322 | 54400323 | chr3:54394322-54400323:-:L1HS:REF | L1HS | REF | full-length | CACNA2D3 | 0.03 |
0.86 |
0.93 |
0.9 |
0.55 |
0.79 |
0.63 |
0.78 |
0.95 |
0.91 |
0.78 |
0.84 |
chr3 | 54458770 | 54464920 | chr3:54458770-54464920:-:L1PA3:REF | L1PA3 | REF | full-length | CACNA2D3 | 0.17 |
0.77 |
0.95 |
0.91 |
0.72 |
0.85 |
0.76 |
0.87 |
0.87 |
0.85 |
0.79 |
0.88 |
chr3 | 54468131 | 54474552 | chr3:54468131-54474552:+:L1PA7:REF | L1PA7 | REF | full-length | CACNA2D3 | 0.0 |
0.66 |
0.9 |
0.9 |
0.85 |
0.68 |
0.55 |
0.64 |
0.87 |
0.74 |
0.58 |
0.62 |
chr3 | 55046104 | 55052129 | chr3:55046104-55052129:-:L1PA2:REF | L1PA2 | REF | full-length | CACNA2D3 | 0.02 |
0.85 |
0.89 |
0.96 |
0.78 |
0.94 |
0.51 |
0.95 |
0.96 |
0.85 |
0.97 |
0.74 |
chr3 | 55754551 | 55754553 | chr3:55754551-55754553:+:L1HS:NONREF | L1HS | KNR | — | ERC2 | 0.02 |
0.95 |
0.98 |
— | 0.02 |
0.92 |
— | 0.94 |
— | 0.56 |
— | 0.88 |
chr3 | 55831626 | 55837762 | chr3:55831626-55837762:+:L1PA4:REF | L1PA4 | REF | full-length | ERC2 | 0.04 |
0.97 |
0.96 |
0.93 |
0.79 |
0.91 |
0.33 |
0.84 |
0.84 |
0.86 |
0.79 |
0.95 |
chr3 | 56213069 | 56219149 | chr3:56213069-56219149:+:L1PA4:REF | L1PA4 | REF | full-length | ERC2 | 0.01 |
0.9 |
0.96 |
0.45 |
0.91 |
0.83 |
0.5 |
0.76 |
0.9 |
0.8 |
0.79 |
0.58 |
chr3 | 56945132 | 56951290 | chr3:56945132-56951290:+:L1PA4:REF | L1PA4 | REF | full-length | ARHGEF3 | 0.03 |
0.97 |
0.95 |
0.95 |
0.93 |
0.84 |
0.97 |
0.87 |
0.97 |
0.93 |
0.89 |
0.98 |
chr3 | 57324583 | 57330726 | chr3:57324583-57330726:+:L1PA3:REF | L1PA3 | REF | full-length | DNAH12 | 0.42 |
0.96 |
0.91 |
0.77 |
0.91 |
0.83 |
0.85 |
0.83 |
0.92 |
0.93 |
0.86 |
0.98 |
chr3 | 57476938 | 57483084 | chr3:57476938-57483084:+:L1PA4:REF | L1PA4 | REF | full-length | DNAH12 | — | — | — | — | 0.62 |
— | — | — | — | 0.61 |
0.5 |
0.59 |
chr3 | 58275643 | 58281729 | chr3:58275643-58281729:-:L1PA6:REF | L1PA6 | REF | full-length | ABHD6 | — | — | — | — | — | — | — | — | — | — | 0.93 |
— |
chr3 | 58758539 | 58764668 | chr3:58758539-58764668:-:L1PA4:REF | L1PA4 | REF | full-length | C3orf67 | 0.98 |
0.93 |
0.86 |
0.43 |
0.93 |
0.87 |
0.44 |
0.85 |
0.98 |
0.84 |
0.91 |
0.98 |
chr3 | 58806577 | 58812715 | chr3:58806577-58812715:+:L1PA3:REF | L1PA3 | REF | full-length | C3orf67 | 0.95 |
0.93 |
0.96 |
0.56 |
0.9 |
0.91 |
0.74 |
0.92 |
0.97 |
0.89 |
0.93 |
0.96 |
chr3 | 58816278 | 58822304 | chr3:58816278-58822304:+:L1PA2:REF | L1PA2 | REF | full-length | C3orf67 | 0.91 |
0.93 |
0.94 |
0.79 |
0.67 |
0.95 |
0.81 |
0.91 |
0.96 |
0.87 |
0.95 |
0.96 |
chr3 | 58842154 | 58848179 | chr3:58842154-58848179:+:L1PA2:REF | L1PA2 | REF | full-length | C3orf67 | 0.0 |
0.92 |
0.94 |
0.78 |
0.08 |
0.97 |
0.79 |
0.95 |
0.82 |
0.9 |
0.97 |
0.98 |
chr3 | 58930787 | 58936933 | chr3:58930787-58936933:+:L1PA3:REF | L1PA3 | REF | full-length | C3orf67 | — | — | 0.82 |
0.53 |
0.81 |
0.98 |
0.6 |
0.87 |
0.95 |
0.92 |
0.95 |
0.98 |
chr3 | 58942283 | 58944327 | chr3:58942283-58944327:+:L1P3:REF | L1P3 | REF | 3prime-truncated | C3orf67 | — | — | — | — | — | — | — | — | — | — | 0.65 |
— |
chr3 | 59395156 | 59400281 | chr3:59395156-59400281:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | 0.9 |
— | — | — | — |
chr3 | 59613855 | 59619953 | chr3:59613855-59619953:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.92 |
0.97 |
0.15 |
— | 0.79 |
0.43 |
0.82 |
0.94 |
0.9 |
0.91 |
0.83 |
chr3 | 60710285 | 60715325 | chr3:60710285-60715325:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | FHIT | 0.16 |
0.87 |
0.97 |
0.16 |
0.95 |
0.72 |
0.74 |
0.93 |
0.96 |
0.94 |
0.91 |
0.99 |
chr3 | 60960425 | 60966566 | chr3:60960425-60966566:-:L1PA5:REF | L1PA5 | REF | full-length | FHIT | 0.64 |
0.93 |
0.99 |
— | 0.84 |
0.56 |
0.94 |
0.77 |
0.97 |
0.97 |
0.72 |
0.99 |
chr3 | 61042988 | 61049130 | chr3:61042988-61049130:+:L1PA5:REF | L1PA5 | REF | full-length | FHIT | 0.7 |
0.96 |
0.94 |
0.13 |
0.86 |
0.55 |
0.96 |
0.66 |
0.94 |
0.92 |
0.57 |
0.97 |
chr3 | 61211021 | 61217154 | chr3:61211021-61217154:+:L1PA3:REF | L1PA3 | REF | full-length | FHIT | — | — | 0.75 |
0.24 |
— | 0.66 |
0.83 |
0.73 |
— | 0.86 |
— | 0.97 |
chr3 | 61259278 | 61264274 | chr3:61259278-61264274:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | FHIT | 0.03 |
— | 0.91 |
— | 0.9 |
0.51 |
0.29 |
0.58 |
— | 0.87 |
0.54 |
0.99 |
chr3 | 61364032 | 61365006 | chr3:61364032-61365006:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.23 |
— |
chr3 | 63136268 | 63142301 | chr3:63136268-63142301:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.31 |
0.89 |
0.66 |
0.03 |
0.78 |
0.88 |
0.81 |
0.88 |
0.44 |
0.78 |
0.86 |
chr3 | 63211708 | 63217714 | chr3:63211708-63217714:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.16 |
0.75 |
0.67 |
0.13 |
0.35 |
0.09 |
0.31 |
0.33 |
0.59 |
0.29 |
0.85 |
chr3 | 63255612 | 63261711 | chr3:63255612-63261711:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.52 |
0.93 |
0.08 |
0.77 |
0.75 |
0.76 |
0.76 |
0.89 |
0.34 |
0.65 |
0.53 |
chr3 | 63645170 | 63651333 | chr3:63645170-63651333:+:L1PA4:REF | L1PA4 | REF | full-length | SNTN | 0.02 |
0.01 |
0.91 |
0.19 |
0.08 |
0.83 |
0.84 |
0.75 |
0.32 |
0.58 |
0.75 |
0.77 |
chr3 | 63693928 | 63695195 | chr3:63693928-63695195:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.46 |
0.4 |
0.05 |
0.79 |
0.51 |
0.02 |
0.48 |
0.85 |
0.02 |
0.29 |
0.29 |
chr3 | 63733312 | 63739364 | chr3:63733312-63739364:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.26 |
0.81 |
0.86 |
0.63 |
0.23 |
0.9 |
0.54 |
0.89 |
0.93 |
0.45 |
0.83 |
0.76 |
chr3 | 64776493 | 64779116 | chr3:64776493-64779116:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | ADAMTS9-AS2 | — | 0.56 |
0.86 |
— | 0.85 |
0.69 |
0.17 |
0.72 |
0.93 |
0.83 |
0.65 |
0.47 |
chr3 | 65220271 | 65220867 | chr3:65220271-65220867:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.03 |
0.73 |
0.8 |
0.14 |
0.94 |
0.75 |
0.21 |
0.77 |
— | 0.69 |
0.76 |
0.62 |
chr3 | 65509292 | 65515316 | chr3:65509292-65515316:+:L1PA2:REF | L1PA2 | REF | full-length | MAGI1 | 0.11 |
0.28 |
0.94 |
0.8 |
0.09 |
0.92 |
0.98 |
0.83 |
0.7 |
0.43 |
0.87 |
0.99 |
chr3 | 66771155 | 66772282 | chr3:66771155-66772282:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.56 |
— | — | 0.9 |
0.94 |
— |
chr3 | 66842801 | 66848943 | chr3:66842801-66848943:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.91 |
0.9 |
0.48 |
0.91 |
0.82 |
0.84 |
0.95 |
0.95 |
0.88 |
0.89 |
0.91 |
chr3 | 67139739 | 67142859 | chr3:67139739-67142859:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | — | 0.0 |
— | 0.88 |
— | 0.93 |
0.73 |
0.6 |
0.8 |
— | 0.52 |
0.9 |
0.99 |