Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3 | 132136909 | 132141753 | chr3:132136909-132141753:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.02 |
0.94 |
0.96 |
0.88 |
0.27 |
0.93 |
0.46 |
0.71 |
0.64 |
0.87 |
0.93 |
0.95 |
chr3 | 132371232 | 132377261 | chr3:132371232-132377261:-:L1PA2:REF | L1PA2 | REF | full-length | ACPP | 0.24 |
0.94 |
0.96 |
0.88 |
0.08 |
0.85 |
0.86 |
0.88 |
0.81 |
0.01 |
0.97 |
0.95 |
chr3 | 132741144 | 132747312 | chr3:132741144-132747312:-:L1PA6:REF | L1PA6 | REF | full-length | NPHP3-AS1 | 0.56 |
0.97 |
0.97 |
0.11 |
0.93 |
0.89 |
0.74 |
0.82 |
0.96 |
0.96 |
0.92 |
0.95 |
chr3 | 132760656 | 132766652 | chr3:132760656-132766652:-:L1PA2:REF | L1PA2 | REF | full-length | NPHP3-AS1 | 0.66 |
0.9 |
0.92 |
0.75 |
0.18 |
0.86 |
0.77 |
0.77 |
0.92 |
0.88 |
0.87 |
0.88 |
chr3 | 132946006 | 132952034 | chr3:132946006-132952034:-:L1HS:REF | L1HS | REF | full-length | — | 0.78 |
0.95 |
0.94 |
0.8 |
0.09 |
0.84 |
0.9 |
0.87 |
0.93 |
0.88 |
0.87 |
0.91 |
chr3 | 133000000 | 133005662 | chr3:133000000-133005662:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.42 |
0.03 |
0.66 |
0.27 |
0.71 |
0.48 |
0.04 |
0.57 |
0.76 |
0.42 |
0.59 |
0.52 |
chr3 | 133310559 | 133312866 | chr3:133310559-133312866:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | TMEM108 | — | — | — | — | — | — | — | — | — | — | 0.35 |
— |
chr3 | 133681221 | 133687356 | chr3:133681221-133687356:+:L1PA5:REF | L1PA5 | REF | full-length | TF | 0.0 |
0.91 |
0.92 |
0.15 |
0.88 |
0.73 |
0.96 |
0.74 |
0.98 |
0.76 |
0.68 |
0.96 |
chr3 | 133723674 | 133729811 | chr3:133723674-133729811:-:L1PA3:REF | L1PA3 | REF | full-length | TF | 0.12 |
0.8 |
0.65 |
0.35 |
0.8 |
0.65 |
0.79 |
0.64 |
0.87 |
0.41 |
0.56 |
0.92 |
chr3 | 134100582 | 134102200 | chr3:134100582-134102200:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.95 |
0.93 |
0.94 |
0.92 |
0.89 |
0.21 |
0.92 |
0.96 |
0.76 |
0.88 |
0.97 |
chr3 | 135002247 | 135005976 | chr3:135002247-135005976:-:L1HS:REF | L1HS | REF | 3prime-truncated | EPHB1 | — | — | — | — | 0.9 |
0.96 |
— | — | — | 0.71 |
0.79 |
0.88 |
chr3 | 135025209 | 135031249 | chr3:135025209-135031249:-:L1PA3:REF | L1PA3 | REF | full-length | EPHB1 | 0.16 |
0.76 |
0.81 |
0.55 |
0.14 |
0.29 |
0.45 |
0.15 |
0.28 |
0.41 |
0.18 |
0.66 |
chr3 | 135252214 | 135258230 | chr3:135252214-135258230:-:L1PA2:REF | L1PA2 | REF | full-length | EPHB1 | 0.01 |
0.73 |
0.92 |
0.4 |
0.63 |
0.71 |
0.48 |
0.63 |
0.81 |
0.46 |
0.67 |
0.74 |
chr3 | 135439148 | 135439860 | chr3:135439148-135439860:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.01 |
0.77 |
0.09 |
0.05 |
0.56 |
0.13 |
0.49 |
0.54 |
0.04 |
0.4 |
0.55 |
chr3 | 135584725 | 135590755 | chr3:135584725-135590755:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.56 |
0.9 |
0.85 |
0.47 |
0.23 |
0.75 |
0.58 |
0.77 |
0.92 |
0.62 |
0.74 |
0.79 |
chr3 | 135658603 | 135664636 | chr3:135658603-135664636:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.32 |
0.96 |
0.97 |
0.81 |
0.03 |
0.85 |
0.92 |
0.86 |
0.84 |
0.81 |
0.86 |
0.93 |
chr3 | 136224307 | 136230440 | chr3:136224307-136230440:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | 0.83 |
— | — | — | — | 0.91 |
0.95 |
0.98 |
chr3 | 136479056 | 136485103 | chr3:136479056-136485103:-:L1HS:REF | L1HS | REF | full-length | STAG1 | 0.94 |
0.97 |
0.96 |
0.98 |
0.32 |
0.98 |
0.97 |
0.98 |
0.96 |
0.98 |
0.99 |
0.98 |
chr3 | 136963693 | 136969736 | chr3:136963693-136969736:-:L1HS:REF | L1HS | REF | full-length | IL20RB | 0.95 |
0.97 |
0.98 |
0.99 |
0.06 |
0.94 |
0.95 |
0.96 |
0.83 |
0.97 |
0.98 |
0.98 |
chr3 | 137211031 | 137217172 | chr3:137211031-137217172:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.66 |
0.81 |
0.3 |
0.89 |
0.65 |
0.58 |
0.74 |
0.91 |
0.41 |
0.73 |
0.62 |
chr3 | 137372109 | 137377745 | chr3:137372109-137377745:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | 0.23 |
— | 0.71 |
0.19 |
0.0 |
— | — | 0.0 |
0.28 |
0.03 |
chr3 | 137412472 | 137418746 | chr3:137412472-137418746:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.21 |
0.72 |
0.1 |
0.63 |
0.69 |
0.29 |
0.56 |
— | 0.27 |
0.58 |
0.65 |
chr3 | 137430506 | 137436694 | chr3:137430506-137436694:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr3 | 137633714 | 137639732 | chr3:137633714-137639732:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.59 |
0.74 |
0.57 |
0.43 |
0.66 |
0.72 |
0.75 |
0.87 |
0.56 |
0.71 |
0.77 |
chr3 | 137653910 | 137660442 | chr3:137653910-137660442:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | 0.9 |
— | — | — | — | — | 0.65 |
— |
chr3 | 137660583 | 137666719 | chr3:137660583-137666719:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.39 |
0.55 |
0.39 |
0.87 |
0.61 |
0.32 |
0.51 |
0.92 |
0.3 |
0.61 |
0.35 |
chr3 | 137679055 | 137679885 | chr3:137679055-137679885:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.03 |
0.56 |
0.81 |
0.27 |
0.87 |
0.55 |
0.22 |
0.47 |
0.92 |
0.41 |
0.63 |
0.6 |
chr3 | 137896608 | 137902264 | chr3:137896608-137902264:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.21 |
0.44 |
0.04 |
0.82 |
0.26 |
0.07 |
0.28 |
0.85 |
0.04 |
0.23 |
0.19 |
chr3 | 139325613 | 139325615 | chr3:139325613-139325615:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.84 |
— | 0.24 |
— | — | — | — | 0.81 |
0.88 |
— |
chr3 | 139404562 | 139410725 | chr3:139404562-139410725:+:L1PA6:REF | L1PA6 | REF | full-length | LOC100507291 | 0.05 |
0.68 |
0.45 |
0.0 |
— | 0.37 |
0.21 |
0.35 |
— | 0.29 |
0.28 |
— |
chr3 | 139590956 | 139596035 | chr3:139590956-139596035:+:L1HS:REF | L1HS | REF | 3prime-truncated | NMNAT3 | 0.15 |
0.97 |
0.98 |
0.79 |
0.11 |
0.85 |
0.53 |
0.87 |
0.93 |
0.94 |
0.84 |
0.98 |
chr3 | 139877463 | 139883576 | chr3:139877463-139883576:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.76 |
0.48 |
0.05 |
0.82 |
0.26 |
0.03 |
0.29 |
0.86 |
0.04 |
0.25 |
0.22 |
chr3 | 140479951 | 140486093 | chr3:140479951-140486093:-:L1PA4:REF | L1PA4 | REF | full-length | CLSTN2 | 0.0 |
0.94 |
0.77 |
0.22 |
0.87 |
0.68 |
0.42 |
0.59 |
0.96 |
0.57 |
0.57 |
0.63 |
chr3 | 140797237 | 140803746 | chr3:140797237-140803746:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
— | 0.92 |
0.09 |
0.9 |
0.4 |
0.14 |
0.05 |
— | 0.08 |
0.26 |
0.18 |
chr3 | 140987571 | 140993670 | chr3:140987571-140993670:+:L1PA5:REF | L1PA5 | REF | full-length | SLC25A36 | 0.02 |
0.95 |
0.96 |
0.72 |
0.93 |
0.85 |
0.8 |
0.85 |
0.97 |
0.91 |
0.84 |
0.97 |
chr3 | 141135363 | 141141479 | chr3:141135363-141141479:-:L1PA4:REF | L1PA4 | REF | full-length | SPSB4 | 0.01 |
0.95 |
0.86 |
0.63 |
0.85 |
0.72 |
0.76 |
0.74 |
0.93 |
0.79 |
0.76 |
0.88 |
chr3 | 141757129 | 141763153 | chr3:141757129-141763153:-:L1PA2:REF | L1PA2 | REF | full-length | RNF7 | 0.9 |
0.47 |
0.98 |
0.91 |
0.28 |
0.97 |
0.82 |
0.97 |
0.9 |
0.95 |
0.98 |
0.98 |
chr3 | 142290203 | 142296232 | chr3:142290203-142296232:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.82 |
0.99 |
0.92 |
0.94 |
0.94 |
0.88 |
0.84 |
0.9 |
— | 0.87 |
0.96 |
0.96 |
chr3 | 142475105 | 142481234 | chr3:142475105-142481234:-:L1PA5:REF | L1PA5 | REF | full-length | ATR | 0.98 |
0.99 |
0.99 |
0.98 |
0.93 |
0.96 |
0.98 |
0.97 |
0.99 |
0.96 |
0.97 |
0.98 |
chr3 | 143402915 | 143402917 | chr3:143402915-143402917:-:L1HS:NONREF | L1HS | KNR | — | SLC9A9 | — | — | — | — | — | — | — | — | — | — | 0.87 |
— |
chr3 | 143662333 | 143668488 | chr3:143662333-143668488:+:L1PA5:REF | L1PA5 | REF | full-length | SLC9A9 | 0.02 |
0.65 |
0.88 |
0.14 |
0.92 |
0.71 |
0.34 |
0.81 |
0.96 |
0.91 |
0.92 |
0.96 |
chr3 | 145252617 | 145258622 | chr3:145252617-145258622:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.92 |
0.78 |
0.49 |
0.66 |
0.82 |
0.68 |
0.8 |
0.87 |
0.61 |
0.81 |
0.97 |
chr3 | 145877907 | 145880135 | chr3:145877907-145880135:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.48 |
1.0 |
chr3 | 145917900 | 145924052 | chr3:145917900-145924052:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.51 |
0.57 |
0.24 |
0.88 |
0.59 |
0.35 |
0.34 |
0.72 |
0.79 |
0.72 |
0.96 |
chr3 | 145927778 | 145933791 | chr3:145927778-145933791:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.76 |
0.64 |
0.28 |
0.46 |
0.81 |
0.42 |
0.73 |
0.92 |
0.77 |
0.81 |
0.94 |
chr3 | 146285252 | 146294041 | chr3:146285252-146294041:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.87 |
0.77 |
0.91 |
0.89 |
0.9 |
0.18 |
0.91 |
0.92 |
0.9 |
0.91 |
0.96 |
chr3 | 146940674 | 146946795 | chr3:146940674-146946795:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.61 |
0.59 |
0.62 |
0.87 |
0.88 |
0.29 |
0.76 |
0.93 |
0.69 |
0.81 |
0.95 |
chr3 | 147315153 | 147317763 | chr3:147315153-147317763:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
0.15 |
0.59 |
0.27 |
0.67 |
0.78 |
0.19 |
0.78 |
0.95 |
0.57 |
0.68 |
0.95 |
chr3 | 147593845 | 147599956 | chr3:147593845-147599956:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.61 |
0.62 |
0.69 |
0.8 |
0.52 |
0.17 |
0.51 |
0.86 |
0.73 |
0.56 |
0.92 |
chr3 | 148780637 | 148786767 | chr3:148780637-148786767:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.81 |
0.87 |
0.61 |
0.86 |
0.5 |
0.42 |
0.73 |
0.97 |
0.88 |
0.6 |
0.98 |