Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3 | 170932917 | 170939072 | chr3:170932917-170939072:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.14 |
0.93 |
0.83 |
0.51 |
0.88 |
0.8 |
0.71 |
0.87 |
0.93 |
0.73 |
0.88 |
0.97 |
chr3 | 173381849 | 173388281 | chr3:173381849-173388281:+:L1PA7:REF | L1PA7 | REF | full-length | NLGN1 | — | — | 0.76 |
— | — | — | — | — | — | — | 0.68 |
— |
chr3 | 174259685 | 174265694 | chr3:174259685-174265694:-:L1PA2:REF | L1PA2 | REF | full-length | NLGN1 | 0.02 |
0.91 |
0.97 |
0.72 |
0.14 |
0.97 |
0.51 |
0.99 |
0.94 |
0.96 |
0.97 |
0.93 |
chr3 | 174605174 | 174611325 | chr3:174605174-174611325:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | 0.52 |
0.82 |
0.91 |
0.67 |
0.96 |
— | 0.86 |
0.94 |
0.95 |
chr3 | 175781710 | 175787737 | chr3:175781710-175787737:-:L1PA2:REF | L1PA2 | REF | full-length | NAALADL2 | 0.03 |
0.98 |
0.93 |
0.8 |
0.13 |
0.97 |
0.84 |
0.97 |
0.96 |
0.94 |
0.98 |
0.98 |
chr3 | 176016123 | 176022184 | chr3:176016123-176022184:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.87 |
0.71 |
0.57 |
0.44 |
0.88 |
0.56 |
0.92 |
0.95 |
0.04 |
0.87 |
0.9 |
chr3 | 176705531 | 176711710 | chr3:176705531-176711710:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.62 |
0.65 |
0.33 |
0.88 |
0.65 |
0.61 |
0.61 |
0.94 |
0.68 |
0.7 |
0.98 |
chr3 | 177388770 | 177394751 | chr3:177388770-177394751:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.91 |
0.57 |
0.94 |
0.47 |
0.1 |
0.94 |
0.92 |
0.85 |
— | 0.02 |
0.94 |
1.0 |
chr3 | 177659339 | 177665319 | chr3:177659339-177665319:-:L1PA4:REF | L1PA4 | REF | full-length | LINC00578 | 0.83 |
0.12 |
0.95 |
— | 0.9 |
0.93 |
0.87 |
0.98 |
0.92 |
0.93 |
0.97 |
0.02 |
chr3 | 178859948 | 178865979 | chr3:178859948-178865979:+:L1PA2:REF | L1PA2 | REF | full-length | KCNMB2-AS1 | 0.01 |
0.19 |
0.81 |
0.41 |
0.13 |
0.76 |
0.55 |
0.76 |
0.89 |
0.06 |
0.94 |
0.01 |
chr3 | 179126722 | 179132866 | chr3:179126722-179132866:-:L1PA3:REF | L1PA3 | REF | full-length | LOC101928739 | — | 0.02 |
0.87 |
— | 0.9 |
— | 0.18 |
0.88 |
— | 0.8 |
0.89 |
0.9 |
chr3 | 180367353 | 180373522 | chr3:180367353-180373522:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.79 |
0.2 |
0.15 |
0.81 |
0.48 |
0.05 |
0.74 |
0.96 |
0.1 |
0.52 |
0.63 |
chr3 | 180448471 | 180452905 | chr3:180448471-180452905:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.93 |
0.78 |
0.59 |
0.85 |
0.74 |
0.77 |
0.88 |
0.92 |
0.61 |
0.75 |
0.84 |
chr3 | 181041413 | 181046904 | chr3:181041413-181046904:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | SOX2-OT | 0.01 |
0.57 |
0.72 |
0.42 |
0.88 |
0.73 |
0.45 |
0.83 |
0.97 |
0.85 |
0.81 |
0.94 |
chr3 | 182426092 | 182432110 | chr3:182426092-182432110:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.15 |
0.1 |
0.94 |
0.7 |
0.13 |
0.75 |
0.81 |
0.83 |
0.9 |
0.2 |
0.75 |
0.98 |
chr3 | 186654351 | 186654353 | chr3:186654351-186654353:+:L1HS:NONREF | L1HS | KNR | — | FETUB | — | — | — | — | 0.43 |
0.92 |
— | — | — | — | 0.91 |
— |
chr3 | 187052299 | 187058423 | chr3:187052299-187058423:-:L1PA6:REF | L1PA6 | REF | full-length | ST6GAL1 | 0.98 |
0.97 |
0.92 |
0.65 |
0.81 |
0.72 |
0.98 |
0.88 |
0.9 |
0.96 |
0.85 |
0.89 |
chr3 | 187412123 | 187418152 | chr3:187412123-187418152:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.29 |
0.85 |
0.76 |
0.05 |
0.88 |
0.26 |
0.74 |
0.73 |
0.03 |
0.82 |
0.27 |
chr3 | 187512728 | 187514886 | chr3:187512728-187514886:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | 0.92 |
0.65 |
0.0 |
0.72 |
0.64 |
0.14 |
0.28 |
— | 0.63 |
0.19 |
0.11 |
chr3 | 187862480 | 187868516 | chr3:187862480-187868516:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.22 |
0.5 |
0.97 |
0.97 |
0.07 |
0.78 |
0.95 |
0.94 |
0.86 |
0.95 |
0.98 |
0.98 |
chr3 | 187890220 | 187896214 | chr3:187890220-187896214:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.83 |
0.94 |
0.96 |
0.07 |
0.96 |
0.42 |
0.94 |
0.83 |
0.64 |
0.96 |
0.02 |
chr3 | 188372709 | 188378861 | chr3:188372709-188378861:-:L1PA4:REF | L1PA4 | REF | full-length | LPP | 0.01 |
0.96 |
0.96 |
0.98 |
0.93 |
0.97 |
0.97 |
0.99 |
0.97 |
0.95 |
0.99 |
0.97 |
chr3 | 190964647 | 190965526 | chr3:190964647-190965526:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.04 |
0.93 |
0.96 |
0.93 |
0.43 |
0.8 |
0.67 |
0.85 |
0.65 |
0.96 |
0.93 |
0.98 |
chr3 | 192149315 | 192155328 | chr3:192149315-192155328:-:L1PA2:REF | L1PA2 | REF | full-length | FGF12 | 0.01 |
0.01 |
0.05 |
0.48 |
— | 0.07 |
0.34 |
0.11 |
0.47 |
0.0 |
— | 0.49 |
chr3 | 192739213 | 192745242 | chr3:192739213-192745242:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.84 |
0.9 |
0.63 |
0.07 |
0.68 |
0.8 |
0.79 |
0.91 |
0.83 |
0.81 |
0.9 |
chr3 | 192961457 | 192965642 | chr3:192961457-192965642:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.2 |
0.97 |
0.52 |
0.85 |
0.91 |
0.43 |
0.92 |
0.97 |
— | 0.84 |
0.97 |
chr3 | 193179387 | 193185025 | chr3:193179387-193185025:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.27 |
— |
chr3 | 195087672 | 195093677 | chr3:195087672-195093677:+:L1PA2:REF | L1PA2 | REF | full-length | XXYLT1 | 0.87 |
0.97 |
0.98 |
0.99 |
0.29 |
0.76 |
0.97 |
0.78 |
0.35 |
0.82 |
0.9 |
0.98 |
chr4 | 4953897 | 4959919 | chr4:4953897-4959919:-:L1PA2:REF | L1PA2 | REF | full-length | LOC101928306 | 0.03 |
0.98 |
0.96 |
0.87 |
0.06 |
0.83 |
0.83 |
0.91 |
0.89 |
0.71 |
0.83 |
0.97 |
chr4 | 5241574 | 5247720 | chr4:5241574-5247720:-:L1PA4:REF | L1PA4 | REF | full-length | STK32B | 0.01 |
0.53 |
0.87 |
0.41 |
0.86 |
0.91 |
0.61 |
0.86 |
0.94 |
0.29 |
0.97 |
0.73 |
chr4 | 5438601 | 5444628 | chr4:5438601-5444628:-:L1PA2:REF | L1PA2 | REF | full-length | STK32B | 0.02 |
0.66 |
0.93 |
0.69 |
0.2 |
0.95 |
0.8 |
0.9 |
0.83 |
0.62 |
0.93 |
0.83 |
chr4 | 5490577 | 5496698 | chr4:5490577-5496698:-:L1PA3:REF | L1PA3 | REF | full-length | STK32B | 0.01 |
0.94 |
0.85 |
0.41 |
0.93 |
0.8 |
0.37 |
0.9 |
0.95 |
0.39 |
0.96 |
0.71 |
chr4 | 5518180 | 5523974 | chr4:5518180-5523974:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | LINC01587 | 0.05 |
0.01 |
0.96 |
0.75 |
0.76 |
0.97 |
0.67 |
0.97 |
0.97 |
0.65 |
0.97 |
0.88 |
chr4 | 5593579 | 5599733 | chr4:5593579-5599733:+:L1PA3:REF | L1PA3 | REF | full-length | EVC2 | — | 0.87 |
0.86 |
— | 0.97 |
0.98 |
0.69 |
0.92 |
— | 0.43 |
0.96 |
0.73 |
chr4 | 5761914 | 5767928 | chr4:5761914-5767928:-:L1PA3:REF | L1PA3 | REF | full-length | EVC | 0.26 |
0.84 |
0.97 |
0.86 |
0.72 |
0.97 |
0.93 |
0.92 |
0.92 |
0.97 |
0.98 |
0.83 |
chr4 | 10631053 | 10631055 | chr4:10631053-10631055:-:L1HS:NONREF | L1HS | KNR | — | CLNK | — | — | — | — | — | — | — | — | — | — | 0.94 |
— |
chr4 | 10775393 | 10781420 | chr4:10775393-10781420:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
— | 0.91 |
— | 0.91 |
0.9 |
0.77 |
0.88 |
— | 0.85 |
0.95 |
0.94 |
chr4 | 10824426 | 10829322 | chr4:10824426-10829322:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | — | 0.78 |
— | — | — | — | — | — | — | — | — | — |
chr4 | 11060915 | 11066938 | chr4:11060915-11066938:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.7 |
0.97 |
0.75 |
0.07 |
0.85 |
0.87 |
0.8 |
0.39 |
0.36 |
0.87 |
0.98 |
chr4 | 11143617 | 11149645 | chr4:11143617-11149645:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.85 |
— |
chr4 | 11235217 | 11241254 | chr4:11235217-11241254:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.69 |
0.83 |
0.55 |
0.23 |
0.72 |
0.65 |
0.72 |
0.73 |
0.55 |
0.69 |
0.83 |
chr4 | 11378740 | 11384770 | chr4:11378740-11384770:-:L1PA2:REF | L1PA2 | REF | full-length | HS3ST1 | — | 0.82 |
0.89 |
0.89 |
0.67 |
0.83 |
0.75 |
— | — | 0.74 |
0.85 |
0.98 |
chr4 | 11557447 | 11563586 | chr4:11557447-11563586:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.7 |
0.88 |
0.92 |
0.94 |
0.72 |
0.38 |
0.89 |
— | 0.41 |
0.91 |
0.99 |
chr4 | 11578358 | 11583517 | chr4:11578358-11583517:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.02 |
0.5 |
0.75 |
0.94 |
0.89 |
0.54 |
0.38 |
0.84 |
0.95 |
0.24 |
0.92 |
0.97 |
chr4 | 11792760 | 11798752 | chr4:11792760-11798752:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | 0.72 |
— | — | 0.4 |
0.56 |
— | — | 0.3 |
0.7 |
0.95 |
chr4 | 12089981 | 12096125 | chr4:12089981-12096125:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.37 |
0.7 |
0.72 |
0.92 |
0.79 |
0.72 |
0.77 |
0.96 |
0.51 |
0.83 |
0.97 |
chr4 | 12334559 | 12340607 | chr4:12334559-12340607:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.41 |
0.6 |
0.42 |
0.84 |
0.69 |
0.62 |
0.73 |
0.93 |
0.33 |
0.71 |
0.94 |
chr4 | 12461348 | 12467472 | chr4:12461348-12467472:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.19 |
— | 0.08 |
0.84 |
0.42 |
0.65 |
0.41 |
0.95 |
0.04 |
0.44 |
0.96 |
chr4 | 12748272 | 12754295 | chr4:12748272-12754295:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.83 |
0.65 |
0.28 |
0.91 |
0.66 |
0.62 |
0.57 |
0.94 |
0.25 |
0.64 |
0.97 |
chr4 | 12903431 | 12909456 | chr4:12903431-12909456:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.88 |
0.66 |
0.46 |
0.27 |
0.61 |
0.83 |
0.71 |
0.73 |
0.59 |
0.59 |
0.87 |