Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 13664471 | 13665255 | chr4:13664471-13665255:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | LINC01182 | 0.22 |
0.84 |
0.77 |
0.8 |
0.85 |
0.95 |
0.66 |
0.88 |
0.92 |
0.5 |
0.91 |
0.87 |
chr4 | 13798977 | 13800320 | chr4:13798977-13800320:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | LINC01182 | — | 0.09 |
— | — | 0.81 |
0.7 |
0.28 |
— | — | — | 0.84 |
0.51 |
chr4 | 14009454 | 14015486 | chr4:14009454-14015486:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.85 |
0.73 |
0.77 |
0.62 |
0.92 |
0.83 |
0.89 |
0.94 |
0.43 |
0.92 |
0.82 |
chr4 | 14207099 | 14213244 | chr4:14207099-14213244:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | 0.9 |
— | 0.41 |
— | — | 0.3 |
0.85 |
0.76 |
chr4 | 14480751 | 14486827 | chr4:14480751-14486827:+:L1PA2:REF | L1PA2 | REF | full-length | LINC00504 | 0.01 |
0.78 |
0.61 |
0.41 |
0.7 |
0.75 |
0.46 |
0.65 |
0.93 |
0.24 |
0.74 |
0.7 |
chr4 | 14660296 | 14666326 | chr4:14660296-14666326:-:L1PA2:REF | L1PA2 | REF | full-length | LINC00504 | 0.01 |
0.94 |
0.72 |
0.83 |
0.88 |
0.85 |
0.78 |
0.85 |
0.96 |
0.53 |
0.79 |
0.93 |
chr4 | 14755114 | 14761144 | chr4:14755114-14761144:+:L1HS:REF | L1HS | REF | full-length | LINC00504 | 0.02 |
0.92 |
0.67 |
0.89 |
0.47 |
0.78 |
0.69 |
0.76 |
0.9 |
0.5 |
0.83 |
0.9 |
chr4 | 15174004 | 15180043 | chr4:15174004-15180043:+:L1PA3:REF | L1PA3 | REF | full-length | LOC101929095 | 0.4 |
0.66 |
0.81 |
0.93 |
0.38 |
0.84 |
0.83 |
0.9 |
0.89 |
0.59 |
0.86 |
0.89 |
chr4 | 15278666 | 15284652 | chr4:15278666-15284652:+:L1PA2:REF | L1PA2 | REF | full-length | LOC101929095 | 0.0 |
0.7 |
0.72 |
0.28 |
0.43 |
0.53 |
0.49 |
0.64 |
0.56 |
0.26 |
0.8 |
0.69 |
chr4 | 15841546 | 15847572 | chr4:15841546-15847572:+:L1HS:REF | L1HS | REF | full-length | CD38 | 0.03 |
0.97 |
0.93 |
0.82 |
0.14 |
0.86 |
0.89 |
0.87 |
0.96 |
0.84 |
0.91 |
0.97 |
chr4 | 16557085 | 16563224 | chr4:16557085-16563224:+:L1PA3:REF | L1PA3 | REF | full-length | LDB2 | 0.02 |
0.97 |
0.84 |
0.78 |
0.91 |
0.98 |
0.83 |
0.97 |
0.96 |
0.59 |
0.98 |
0.94 |
chr4 | 16628635 | 16632765 | chr4:16628635-16632765:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | LDB2 | 0.0 |
0.71 |
0.71 |
0.56 |
0.95 |
0.97 |
0.57 |
0.98 |
0.94 |
0.26 |
0.84 |
0.57 |
chr4 | 16942776 | 16944630 | chr4:16942776-16944630:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.03 |
0.63 |
0.94 |
0.79 |
0.82 |
0.95 |
0.91 |
0.97 |
0.97 |
0.75 |
0.98 |
0.87 |
chr4 | 17728768 | 17730630 | chr4:17728768-17730630:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | FAM184B | 0.03 |
0.84 |
0.85 |
0.62 |
0.91 |
0.68 |
0.7 |
0.8 |
0.96 |
0.65 |
0.78 |
— |
chr4 | 17848545 | 17849678 | chr4:17848545-17849678:+:L1P1:REF | L1P1 | REF | 3prime-truncated | LCORL | 0.97 |
0.99 |
0.98 |
0.99 |
0.94 |
0.98 |
0.98 |
0.98 |
0.98 |
0.97 |
0.99 |
0.99 |
chr4 | 18559112 | 18565521 | chr4:18559112-18565521:+:L1PA8:REF | L1PA8 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.18 |
— |
chr4 | 19077911 | 19083929 | chr4:19077911-19083929:-:L1HS:REF | L1HS | REF | full-length | — | 0.17 |
— | — | 0.72 |
— | — | 0.8 |
0.89 |
— | — | — | 0.97 |
chr4 | 19862802 | 19868968 | chr4:19862802-19868968:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.25 |
0.61 |
0.09 |
0.83 |
0.82 |
0.01 |
0.88 |
0.92 |
0.38 |
0.89 |
0.99 |
chr4 | 19920144 | 19921804 | chr4:19920144-19921804:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.03 |
0.87 |
0.96 |
0.54 |
0.92 |
0.98 |
0.29 |
0.98 |
0.93 |
0.84 |
0.92 |
1.0 |
chr4 | 20738625 | 20744778 | chr4:20738625-20744778:+:L1PA5:REF | L1PA5 | REF | full-length | PACRGL | 1.0 |
0.95 |
0.9 |
— | 0.89 |
0.97 |
0.98 |
— | — | 0.82 |
0.96 |
1.0 |
chr4 | 21103586 | 21109754 | chr4:21103586-21109754:-:L1PA3:REF | L1PA3 | REF | full-length | KCNIP4 | 0.01 |
0.15 |
0.68 |
0.49 |
0.74 |
0.75 |
0.67 |
0.72 |
0.94 |
0.38 |
0.71 |
0.69 |
chr4 | 21159390 | 21165421 | chr4:21159390-21165421:+:L1HS:REF | L1HS | REF | full-length | KCNIP4 | 0.04 |
— | 0.93 |
— | — | 0.85 |
0.94 |
0.85 |
— | 0.58 |
0.84 |
0.92 |
chr4 | 21352152 | 21358331 | chr4:21352152-21358331:+:L1PA6:REF | L1PA6 | REF | full-length | KCNIP4 | 0.0 |
0.08 |
0.28 |
0.03 |
0.8 |
0.36 |
0.03 |
0.36 |
0.9 |
0.03 |
0.25 |
0.09 |
chr4 | 22039466 | 22041317 | chr4:22039466-22041317:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.02 |
— |
chr4 | 22146427 | 22152457 | chr4:22146427-22152457:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.24 |
0.56 |
0.33 |
0.83 |
0.6 |
0.3 |
0.8 |
0.95 |
0.27 |
0.68 |
0.69 |
chr4 | 23614771 | 23620793 | chr4:23614771-23620793:+:L1HS:REF | L1HS | REF | full-length | — | 0.15 |
0.58 |
0.57 |
0.78 |
0.19 |
0.8 |
0.59 |
0.91 |
0.82 |
0.52 |
0.84 |
0.72 |
chr4 | 23641744 | 23647772 | chr4:23641744-23647772:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.38 |
0.69 |
— | 0.78 |
0.73 |
0.29 |
0.81 |
— | 0.49 |
0.7 |
0.62 |
chr4 | 24938412 | 24944561 | chr4:24938412-24944561:+:L1PA4:REF | L1PA4 | REF | full-length | CCDC149 | 0.02 |
0.91 |
0.72 |
0.44 |
0.88 |
0.77 |
0.53 |
0.73 |
0.96 |
0.57 |
0.75 |
0.94 |
chr4 | 26167871 | 26170223 | chr4:26167871-26170223:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.1 |
0.93 |
0.89 |
0.83 |
0.93 |
0.89 |
0.88 |
0.97 |
0.89 |
0.89 |
0.98 |
0.97 |
chr4 | 26640435 | 26645841 | chr4:26640435-26645841:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | TBC1D19 | 0.78 |
0.98 |
0.98 |
0.97 |
0.93 |
0.96 |
0.98 |
0.95 |
0.89 |
0.98 |
0.98 |
0.97 |
chr4 | 26652540 | 26656020 | chr4:26652540-26656020:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | TBC1D19 | 0.68 |
0.96 |
0.97 |
0.97 |
0.92 |
0.98 |
0.92 |
0.98 |
0.98 |
0.96 |
0.98 |
0.98 |
chr4 | 27070203 | 27076264 | chr4:27070203-27076264:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.77 |
0.85 |
0.61 |
0.47 |
0.74 |
0.8 |
0.75 |
0.87 |
0.79 |
0.78 |
0.9 |
chr4 | 27375687 | 27381719 | chr4:27375687-27381719:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.09 |
0.94 |
0.91 |
0.82 |
0.21 |
0.88 |
0.7 |
0.86 |
0.98 |
0.71 |
0.89 |
0.93 |
chr4 | 28851527 | 28857668 | chr4:28851527-28857668:-:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | 0.04 |
— | — | 0.34 |
— | — | — | 0.04 |
0.59 |
— |
chr4 | 29893106 | 29893108 | chr4:29893106-29893108:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | 0.92 |
— | — | — | — |
chr4 | 30623733 | 30624057 | chr4:30623733-30624057:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.02 |
— | — | — | 0.5 |
— |
chr4 | 33240863 | 33242027 | chr4:33240863-33242027:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.18 |
— |
chr4 | 37407738 | 37414133 | chr4:37407738-37414133:+:L1PA7:REF | L1PA7 | REF | full-length | NWD2 | — | — | — | — | 0.69 |
— | — | — | — | — | 0.59 |
— |
chr4 | 38442787 | 38448926 | chr4:38442787-38448926:-:L1PA4:REF | L1PA4 | REF | full-length | LINC01258 | 0.29 |
0.67 |
0.17 |
0.67 |
0.89 |
0.5 |
0.72 |
0.48 |
0.88 |
0.24 |
0.46 |
0.74 |
chr4 | 41270421 | 41276554 | chr4:41270421-41276554:-:L1PA4:REF | L1PA4 | REF | full-length | UCHL1 | 0.02 |
0.86 |
0.98 |
0.8 |
0.89 |
0.97 |
0.66 |
0.97 |
0.97 |
0.93 |
0.95 |
0.95 |
chr4 | 41349460 | 41355618 | chr4:41349460-41355618:+:L1PA6:REF | L1PA6 | REF | full-length | LIMCH1 | 0.0 |
0.99 |
0.97 |
0.96 |
0.96 |
0.95 |
0.63 |
0.76 |
0.95 |
0.96 |
0.82 |
0.98 |
chr4 | 42041757 | 42048239 | chr4:42041757-42048239:+:L1PA7:REF | L1PA7 | REF | full-length | SLC30A9 | — | — | — | — | — | — | — | — | — | — | 0.1 |
— |
chr4 | 42696300 | 42702436 | chr4:42696300-42702436:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.87 |
0.88 |
0.55 |
0.85 |
0.56 |
0.21 |
0.55 |
0.91 |
0.82 |
0.54 |
0.92 |
chr4 | 43092867 | 43099023 | chr4:43092867-43099023:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.41 |
0.39 |
0.26 |
0.84 |
0.59 |
0.38 |
0.63 |
0.93 |
0.22 |
0.68 |
0.53 |
chr4 | 43891541 | 43897640 | chr4:43891541-43897640:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.23 |
0.41 |
0.1 |
0.89 |
0.38 |
0.24 |
0.43 |
0.93 |
0.12 |
0.45 |
0.37 |
chr4 | 44264460 | 44270554 | chr4:44264460-44270554:+:L1PA3:REF | L1PA3 | REF | full-length | KCTD8 | 0.01 |
0.32 |
0.58 |
0.31 |
0.74 |
0.55 |
0.34 |
0.62 |
0.82 |
0.25 |
0.59 |
0.57 |
chr4 | 44743989 | 44750132 | chr4:44743989-44750132:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.37 |
0.71 |
0.46 |
0.91 |
0.54 |
0.29 |
0.57 |
0.8 |
0.2 |
0.53 |
0.73 |
chr4 | 44879460 | 44885597 | chr4:44879460-44885597:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.37 |
— | — | 0.87 |
0.63 |
0.42 |
0.68 |
0.96 |
0.18 |
0.68 |
0.8 |
chr4 | 45051553 | 45054140 | chr4:45051553-45054140:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.6 |
0.44 |
0.31 |
0.86 |
0.72 |
0.04 |
0.7 |
0.95 |
0.07 |
0.64 |
0.58 |
chr4 | 46404685 | 46410810 | chr4:46404685-46410810:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.05 |
0.13 |
0.67 |
0.37 |
0.8 |
0.5 |
0.28 |
0.73 |
0.88 |
0.08 |
0.81 |
0.18 |