Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 46567128 | 46573270 | chr4:46567128-46573270:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.45 |
— | — | 0.91 |
0.6 |
0.63 |
0.6 |
0.87 |
— | 0.65 |
0.62 |
chr4 | 47294116 | 47300250 | chr4:47294116-47300250:+:L1PA3:REF | L1PA3 | REF | full-length | GABRB1 | — | 0.03 |
— | — | 0.78 |
0.29 |
0.3 |
— | — | 0.18 |
0.92 |
0.47 |
chr4 | 48051954 | 48057974 | chr4:48051954-48057974:-:L1HS:REF | L1HS | REF | full-length | TXK | — | 0.92 |
0.94 |
0.87 |
0.15 |
0.87 |
0.91 |
0.84 |
0.87 |
0.92 |
0.86 |
0.98 |
chr4 | 48711074 | 48717284 | chr4:48711074-48717284:+:L1PA3:REF | L1PA3 | REF | full-length | FRYL | 0.93 |
0.97 |
0.97 |
0.97 |
0.91 |
0.99 |
0.93 |
0.99 |
0.98 |
0.97 |
0.95 |
0.98 |
chr4 | 48864580 | 48870732 | chr4:48864580-48870732:-:L1PA4:REF | L1PA4 | REF | full-length | OCIAD1 | 0.23 |
0.95 |
0.88 |
0.88 |
0.86 |
0.82 |
0.71 |
0.81 |
0.9 |
0.63 |
0.84 |
0.98 |
chr4 | 48917870 | 48923851 | chr4:48917870-48923851:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.68 |
0.67 |
0.96 |
0.66 |
0.95 |
0.9 |
0.88 |
0.92 |
0.97 |
0.89 |
0.95 |
0.97 |
chr4 | 49007476 | 49013621 | chr4:49007476-49013621:-:L1PA6:REF | L1PA6 | REF | full-length | CWH43 | 0.0 |
— | 0.61 |
— | 0.88 |
0.35 |
0.0 |
— | — | 0.15 |
0.43 |
— |
chr4 | 49067846 | 49071936 | chr4:49067846-49071936:+:L1P1:REF | L1P1 | REF | 3prime-truncated | CWH43 | — | 0.61 |
0.84 |
0.23 |
0.06 |
0.64 |
0.42 |
— | 0.39 |
0.4 |
0.82 |
0.96 |
chr4 | 49071924 | 49074016 | chr4:49071924-49074016:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | CWH43 | 0.1 |
— | 0.45 |
0.48 |
0.54 |
0.56 |
0.49 |
— | 0.74 |
0.26 |
0.51 |
0.72 |
chr4 | 49169833 | 49175964 | chr4:49169833-49175964:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.12 |
0.18 |
0.52 |
0.2 |
0.56 |
0.47 |
0.57 |
0.69 |
0.55 |
0.32 |
0.56 |
0.49 |
chr4 | 49620917 | 49626617 | chr4:49620917-49626617:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.04 |
0.18 |
— | 0.54 |
0.39 |
0.24 |
0.38 |
0.73 |
0.04 |
0.39 |
0.19 |
chr4 | 51935074 | 51941089 | chr4:51935074-51941089:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | 0.6 |
0.87 |
0.87 |
— | — | 0.79 |
0.7 |
0.95 |
chr4 | 51952088 | 51953366 | chr4:51952088-51953366:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
0.91 |
0.45 |
0.0 |
0.82 |
0.36 |
0.42 |
0.38 |
0.76 |
0.18 |
0.37 |
0.88 |
chr4 | 51985080 | 51990520 | chr4:51985080-51990520:-:L1P1:REF | L1P1 | REF | 3prime-truncated | LRRC66 | 0.0 |
0.6 |
0.3 |
0.03 |
0.71 |
0.39 |
0.38 |
0.4 |
0.71 |
0.11 |
0.39 |
— |
chr4 | 52119227 | 52123104 | chr4:52119227-52123104:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | 0.93 |
0.87 |
0.45 |
0.92 |
0.82 |
0.7 |
0.73 |
0.95 |
0.81 |
0.87 |
0.94 |
chr4 | 52218222 | 52224371 | chr4:52218222-52224371:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.81 |
0.88 |
0.69 |
0.91 |
0.88 |
0.85 |
0.74 |
0.98 |
0.87 |
0.82 |
0.9 |
chr4 | 52319788 | 52325813 | chr4:52319788-52325813:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.84 |
0.78 |
0.47 |
0.91 |
0.69 |
0.57 |
0.75 |
0.82 |
0.64 |
0.74 |
0.82 |
chr4 | 52446348 | 52452482 | chr4:52446348-52452482:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.61 |
0.27 |
0.04 |
0.8 |
0.53 |
0.15 |
0.54 |
0.85 |
0.08 |
0.54 |
0.54 |
chr4 | 52538471 | 52544498 | chr4:52538471-52544498:+:L1HS:REF | L1HS | REF | full-length | — | 0.09 |
0.92 |
0.94 |
0.88 |
0.72 |
0.9 |
0.85 |
0.97 |
0.95 |
0.93 |
0.94 |
0.97 |
chr4 | 52816456 | 52822486 | chr4:52816456-52822486:+:L1HS:REF | L1HS | REF | full-length | LINC01618 | 0.14 |
0.93 |
0.98 |
0.8 |
0.56 |
0.93 |
0.94 |
0.95 |
0.94 |
0.95 |
0.96 |
0.96 |
chr4 | 52895176 | 52901291 | chr4:52895176-52901291:-:L1PA4:REF | L1PA4 | REF | full-length | SCFD2 | 0.95 |
0.95 |
0.92 |
0.97 |
0.9 |
0.98 |
0.96 |
0.98 |
0.95 |
0.91 |
0.97 |
0.98 |
chr4 | 52970031 | 52976182 | chr4:52970031-52976182:+:L1PA4:REF | L1PA4 | REF | full-length | SCFD2 | 0.66 |
0.96 |
0.96 |
0.92 |
0.93 |
0.98 |
0.97 |
0.96 |
0.97 |
0.96 |
0.97 |
0.97 |
chr4 | 53213660 | 53219784 | chr4:53213660-53219784:-:L1PA5:REF | L1PA5 | REF | full-length | SCFD2 | 0.94 |
0.91 |
0.94 |
0.98 |
0.89 |
0.99 |
0.8 |
0.93 |
0.95 |
0.97 |
0.96 |
0.97 |
chr4 | 53297965 | 53304112 | chr4:53297965-53304112:+:L1PA4:REF | L1PA4 | REF | full-length | SCFD2 | 0.85 |
0.93 |
0.87 |
0.92 |
0.84 |
0.87 |
0.87 |
0.87 |
0.92 |
0.83 |
0.98 |
0.92 |
chr4 | 53328731 | 53334762 | chr4:53328731-53334762:+:L1PA2:REF | L1PA2 | REF | full-length | SCFD2 | 0.54 |
0.55 |
0.89 |
0.98 |
0.84 |
0.98 |
0.9 |
— | 0.98 |
0.87 |
0.99 |
0.98 |
chr4 | 53339989 | 53346107 | chr4:53339989-53346107:+:L1PA6:REF | L1PA6 | REF | full-length | SCFD2 | 0.93 |
0.96 |
0.97 |
0.97 |
0.93 |
0.95 |
0.97 |
0.98 |
0.95 |
0.96 |
0.98 |
0.97 |
chr4 | 53404014 | 53410141 | chr4:53404014-53410141:-:L1PA3:REF | L1PA3 | REF | full-length | FIP1L1 | 0.97 |
0.99 |
0.98 |
0.99 |
0.93 |
0.98 |
0.99 |
0.98 |
0.99 |
0.97 |
0.98 |
0.99 |
chr4 | 53502121 | 53502123 | chr4:53502121-53502123:-:L1HS:NONREF | L1HS | KNR | — | LNX1 | 0.38 |
— | — | — | — | — | — | — | — | — | — | — |
chr4 | 53564637 | 53570664 | chr4:53564637-53570664:+:L1PA3:REF | L1PA3 | REF | full-length | LNX1 | — | — | — | — | 0.2 |
0.89 |
0.89 |
— | — | — | 0.97 |
0.87 |
chr4 | 53823629 | 53829782 | chr4:53823629-53829782:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.75 |
0.94 |
0.57 |
0.83 |
0.92 |
0.63 |
0.89 |
— | 0.86 |
0.94 |
0.9 |
chr4 | 53877116 | 53883135 | chr4:53877116-53883135:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.85 |
0.85 |
0.56 |
0.12 |
0.84 |
0.8 |
0.9 |
0.74 |
0.82 |
0.85 |
0.89 |
chr4 | 54243580 | 54249798 | chr4:54243580-54249798:+:L1PA3:REF | L1PA3 | REF | full-length | PDGFRA | 0.05 |
0.93 |
0.92 |
0.78 |
0.88 |
0.99 |
0.87 |
0.99 |
0.97 |
0.86 |
0.98 |
0.94 |
chr4 | 54450897 | 54453929 | chr4:54450897-54453929:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.04 |
0.65 |
0.36 |
0.02 |
0.8 |
0.54 |
0.05 |
0.29 |
0.54 |
0.45 |
0.34 |
0.21 |
chr4 | 54458779 | 54459751 | chr4:54458779-54459751:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.19 |
0.97 |
0.83 |
0.0 |
0.97 |
0.89 |
0.02 |
0.76 |
0.88 |
0.88 |
0.84 |
0.22 |
chr4 | 54528934 | 54535093 | chr4:54528934-54535093:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.91 |
0.98 |
0.96 |
0.63 |
0.85 |
0.95 |
0.84 |
0.98 |
0.96 |
0.95 |
0.97 |
0.88 |
chr4 | 54807074 | 54813217 | chr4:54807074-54813217:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr4 | 55619153 | 55625181 | chr4:55619153-55625181:+:L1PA2:REF | L1PA2 | REF | full-length | NMU | 0.88 |
0.98 |
0.96 |
0.83 |
0.22 |
0.76 |
0.41 |
0.83 |
0.73 |
0.96 |
0.9 |
0.98 |
chr4 | 55841737 | 55847894 | chr4:55841737-55847894:+:L1PA3:REF | L1PA3 | REF | full-length | EXOC1L | 0.24 |
0.04 |
0.91 |
0.76 |
0.64 |
0.78 |
0.72 |
0.82 |
0.83 |
0.45 |
0.93 |
0.85 |
chr4 | 56331254 | 56337382 | chr4:56331254-56337382:-:L1PA3:REF | L1PA3 | REF | full-length | KIAA1211 | 0.95 |
0.99 |
0.96 |
0.97 |
0.93 |
0.96 |
0.97 |
0.98 |
0.97 |
0.98 |
0.97 |
0.98 |
chr4 | 56884322 | 56885537 | chr4:56884322-56885537:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.54 |
0.92 |
0.99 |
0.99 |
0.88 |
0.78 |
0.41 |
0.92 |
0.99 |
0.94 |
0.86 |
0.99 |
chr4 | 57383830 | 57389973 | chr4:57383830-57389973:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.72 |
0.73 |
0.34 |
0.83 |
0.75 |
0.21 |
0.63 |
0.88 |
0.5 |
0.55 |
0.79 |
chr4 | 57531853 | 57537985 | chr4:57531853-57537985:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | 0.88 |
0.29 |
0.05 |
— | 0.85 |
0.14 |
0.3 |
0.48 |
chr4 | 57562316 | 57568347 | chr4:57562316-57568347:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.67 |
0.76 |
0.69 |
0.28 |
0.78 |
0.76 |
0.81 |
0.9 |
0.57 |
0.8 |
0.78 |
chr4 | 57568343 | 57571561 | chr4:57568343-57571561:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.13 |
0.25 |
0.07 |
0.86 |
0.25 |
0.05 |
0.28 |
0.96 |
0.27 |
0.31 |
0.55 |
chr4 | 57714124 | 57717199 | chr4:57714124-57717199:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
0.1 |
0.22 |
0.0 |
0.73 |
0.28 |
0.02 |
0.18 |
0.89 |
0.37 |
0.14 |
0.56 |
chr4 | 57899612 | 57900878 | chr4:57899612-57900878:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | — | — | 0.32 |
— | 0.75 |
— | 0.35 |
— | — | 0.48 |
0.48 |
0.61 |
chr4 | 57918071 | 57919673 | chr4:57918071-57919673:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.03 |
0.49 |
0.6 |
0.58 |
0.8 |
0.73 |
0.55 |
0.76 |
0.92 |
0.65 |
0.73 |
0.8 |
chr4 | 58149260 | 58155721 | chr4:58149260-58155721:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr4 | 58397662 | 58401922 | chr4:58397662-58401922:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.0 |
— | 0.31 |
0.21 |
0.77 |
0.46 |
0.28 |
0.46 |
0.87 |
0.28 |
0.35 |
0.56 |
chr4 | 59078847 | 59084877 | chr4:59078847-59084877:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
— | — | 0.83 |
0.08 |
— | 0.72 |
0.86 |
0.95 |
— | — | 0.97 |