Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 72593713 | 72599863 | chr4:72593713-72599863:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.8 |
0.56 |
0.91 |
0.26 |
0.87 |
0.87 |
0.24 |
0.82 |
0.95 |
0.06 |
0.79 |
0.66 |
chr4 | 72845982 | 72847627 | chr4:72845982-72847627:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.44 |
0.64 |
0.35 |
0.02 |
0.75 |
0.57 |
0.43 |
0.2 |
0.97 |
0.5 |
0.29 |
0.27 |
chr4 | 73360155 | 73366246 | chr4:73360155-73366246:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.25 |
0.47 |
0.59 |
0.46 |
0.83 |
0.61 |
0.83 |
0.68 |
0.83 |
0.62 |
0.66 |
0.92 |
chr4 | 74717539 | 74723587 | chr4:74717539-74723587:-:L1HS:REF | L1HS | REF | full-length | — | 0.46 |
— | 0.95 |
0.86 |
0.64 |
— | 0.72 |
0.95 |
0.97 |
0.93 |
0.92 |
— |
chr4 | 74910212 | 74916645 | chr4:74910212-74916645:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.35 |
0.72 |
0.0 |
0.74 |
0.13 |
0.04 |
0.12 |
0.93 |
0.74 |
0.11 |
0.87 |
chr4 | 75126805 | 75132838 | chr4:75126805-75132838:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.88 |
0.96 |
0.66 |
0.14 |
0.71 |
0.8 |
0.75 |
0.86 |
0.85 |
0.74 |
0.33 |
chr4 | 75215015 | 75221174 | chr4:75215015-75221174:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.86 |
0.89 |
0.13 |
0.83 |
0.58 |
0.52 |
0.59 |
0.91 |
0.84 |
0.44 |
0.95 |
chr4 | 75270579 | 75276607 | chr4:75270579-75276607:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.69 |
0.64 |
0.44 |
0.47 |
0.46 |
0.61 |
0.57 |
0.89 |
0.62 |
0.48 |
0.65 |
chr4 | 75298846 | 75301125 | chr4:75298846-75301125:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | 0.17 |
— | 0.83 |
0.27 |
0.0 |
— | — | — | 0.17 |
0.75 |
chr4 | 75331003 | 75333439 | chr4:75331003-75333439:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.62 |
— |
chr4 | 75401194 | 75407226 | chr4:75401194-75407226:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.9 |
0.98 |
0.76 |
0.22 |
0.8 |
0.91 |
0.83 |
0.93 |
0.91 |
0.86 |
0.97 |
chr4 | 75418529 | 75421391 | chr4:75418529-75421391:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.03 |
0.66 |
0.77 |
0.06 |
0.9 |
0.43 |
0.71 |
0.49 |
0.71 |
0.76 |
0.48 |
0.9 |
chr4 | 75442536 | 75448552 | chr4:75442536-75448552:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.9 |
0.81 |
0.6 |
0.47 |
0.78 |
0.87 |
0.76 |
0.9 |
0.83 |
0.8 |
0.97 |
chr4 | 76477675 | 76484153 | chr4:76477675-76484153:+:L1PA7:REF | L1PA7 | REF | full-length | SHROOM3 | 0.01 |
0.94 |
0.94 |
0.49 |
0.94 |
0.64 |
0.47 |
0.77 |
0.96 |
0.9 |
0.83 |
0.97 |
chr4 | 77298460 | 77301620 | chr4:77298460-77301620:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.89 |
— |
chr4 | 77301626 | 77303726 | chr4:77301626-77303726:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | 0.59 |
— | — | 0.72 |
0.49 |
0.07 |
0.47 |
— | — | 0.16 |
0.93 |
chr4 | 77321655 | 77327742 | chr4:77321655-77327742:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.77 |
0.78 |
0.27 |
0.8 |
0.63 |
0.47 |
0.61 |
0.82 |
0.33 |
0.45 |
0.85 |
chr4 | 77522544 | 77524858 | chr4:77522544-77524858:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CXCL13 | — | — | — | — | — | — | — | — | — | — | 0.4 |
— |
chr4 | 77531376 | 77534179 | chr4:77531376-77534179:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | CXCL13 | 0.01 |
0.97 |
0.88 |
0.0 |
0.81 |
0.22 |
0.06 |
0.5 |
0.81 |
0.3 |
0.55 |
0.88 |
chr4 | 78105735 | 78111765 | chr4:78105735-78111765:+:L1HS:REF | L1HS | REF | full-length | FRAS1 | 0.07 |
0.91 |
0.97 |
0.82 |
0.21 |
0.98 |
0.91 |
0.81 |
0.94 |
0.97 |
0.79 |
0.98 |
chr4 | 78112832 | 78118967 | chr4:78112832-78118967:-:L1PA4:REF | L1PA4 | REF | full-length | FRAS1 | 0.01 |
0.85 |
0.94 |
0.18 |
0.9 |
0.94 |
0.98 |
0.74 |
0.95 |
0.94 |
0.65 |
0.97 |
chr4 | 78125567 | 78126535 | chr4:78125567-78126535:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | FRAS1 | 0.02 |
0.72 |
0.95 |
0.2 |
0.83 |
0.95 |
0.82 |
0.41 |
0.9 |
0.87 |
0.47 |
0.98 |
chr4 | 78192050 | 78195922 | chr4:78192050-78195922:-:L1P1:REF | L1P1 | REF | 3prime-truncated | FRAS1 | 0.02 |
0.94 |
0.92 |
0.56 |
0.91 |
0.92 |
0.98 |
0.66 |
0.93 |
0.92 |
0.61 |
0.98 |
chr4 | 78271318 | 78277463 | chr4:78271318-78277463:-:L1PA5:REF | L1PA5 | REF | full-length | FRAS1 | 0.01 |
0.69 |
0.9 |
0.19 |
0.84 |
0.93 |
0.99 |
0.54 |
0.93 |
0.91 |
0.54 |
0.97 |
chr4 | 78301853 | 78307882 | chr4:78301853-78307882:-:L1PA3:REF | L1PA3 | REF | full-length | FRAS1 | 0.22 |
0.93 |
0.97 |
0.73 |
0.7 |
0.96 |
0.98 |
0.85 |
0.93 |
0.96 |
0.88 |
0.98 |
chr4 | 78347980 | 78354013 | chr4:78347980-78354013:+:L1HS:REF | L1HS | REF | full-length | FRAS1 | — | 0.93 |
— | — | 0.34 |
— | — | — | — | — | — | — |
chr4 | 78501721 | 78506887 | chr4:78501721-78506887:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | FRAS1 | 0.14 |
— | — | — | 0.67 |
— | — | — | — | — | 0.94 |
0.64 |
chr4 | 79704552 | 79710581 | chr4:79704552-79710581:+:L1HS:REF | L1HS | REF | full-length | — | 0.74 |
0.88 |
0.93 |
0.65 |
0.13 |
0.83 |
0.84 |
0.91 |
0.91 |
0.92 |
0.92 |
0.91 |
chr4 | 79937715 | 79943746 | chr4:79937715-79943746:+:L1HS:REF | L1HS | REF | full-length | ANTXR2 | 0.97 |
0.85 |
0.98 |
0.85 |
0.11 |
0.99 |
0.98 |
0.97 |
0.91 |
0.86 |
0.98 |
0.98 |
chr4 | 79966907 | 79972933 | chr4:79966907-79972933:+:L1HS:REF | L1HS | REF | full-length | ANTXR2 | 0.98 |
0.89 |
— | 0.9 |
— | — | — | — | 0.96 |
— | — | 0.98 |
chr4 | 80855406 | 80861562 | chr4:80855406-80861562:-:L1PA3:REF | L1PA3 | REF | full-length | CFAP299 | 0.01 |
0.79 |
0.59 |
0.33 |
0.91 |
0.77 |
0.49 |
0.79 |
0.92 |
0.65 |
0.84 |
0.85 |
chr4 | 81153755 | 81154892 | chr4:81153755-81154892:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | PRKG2 | — | — | 0.92 |
0.02 |
— | 0.91 |
0.23 |
— | — | 0.72 |
0.91 |
0.01 |
chr4 | 81473382 | 81475487 | chr4:81473382-81475487:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | RASGEF1B | 0.07 |
— | 0.94 |
— | 0.84 |
0.91 |
0.88 |
0.95 |
— | 0.94 |
0.92 |
0.72 |
chr4 | 81714938 | 81720512 | chr4:81714938-81720512:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.06 |
0.7 |
0.97 |
0.47 |
— | 0.59 |
0.53 |
0.69 |
0.94 |
0.88 |
0.69 |
0.54 |
chr4 | 81931746 | 81937925 | chr4:81931746-81937925:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.26 |
0.6 |
0.68 |
0.77 |
0.51 |
0.27 |
0.66 |
0.77 |
0.47 |
0.53 |
0.72 |
chr4 | 82019561 | 82022377 | chr4:82019561-82022377:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.54 |
0.79 |
0.61 |
0.92 |
0.72 |
0.62 |
0.77 |
0.87 |
0.42 |
0.78 |
0.71 |
chr4 | 82184119 | 82190281 | chr4:82184119-82190281:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.7 |
0.9 |
0.72 |
0.86 |
0.73 |
0.69 |
0.74 |
0.72 |
0.73 |
0.62 |
0.62 |
chr4 | 82271479 | 82274851 | chr4:82271479-82274851:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.33 |
— |
chr4 | 83397906 | 83404039 | chr4:83397906-83404039:+:L1PA4:REF | L1PA4 | REF | full-length | HELQ | 0.16 |
0.93 |
0.88 |
0.95 |
0.81 |
0.86 |
0.82 |
0.87 |
0.96 |
0.87 |
0.93 |
0.98 |
chr4 | 83952175 | 83958205 | chr4:83952175-83958205:-:L1PA3:REF | L1PA3 | REF | full-length | LOC101928978 | 0.2 |
0.79 |
0.93 |
0.72 |
0.93 |
0.9 |
0.8 |
0.9 |
0.96 |
0.92 |
0.8 |
0.99 |
chr4 | 84126785 | 84132814 | chr4:84126785-84132814:+:L1PA2:REF | L1PA2 | REF | full-length | LOC101928978 | 0.02 |
0.64 |
0.95 |
0.9 |
0.05 |
0.53 |
0.93 |
0.65 |
0.6 |
0.01 |
0.53 |
0.98 |
chr4 | 84285633 | 84288591 | chr4:84285633-84288591:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | LOC101928978 | — | — | — | — | — | — | 0.0 |
— | — | — | — | — |
chr4 | 84298780 | 84304810 | chr4:84298780-84304810:+:L1PA2:REF | L1PA2 | REF | full-length | LOC101928978 | — | — | 0.96 |
— | 0.05 |
0.83 |
0.58 |
0.84 |
0.85 |
0.0 |
0.81 |
0.97 |
chr4 | 84987206 | 84993388 | chr4:84987206-84993388:+:L1PA4:REF | L1PA4 | REF | full-length | WDFY3-AS2 | 0.05 |
0.96 |
0.93 |
0.78 |
0.92 |
0.95 |
0.85 |
0.96 |
0.96 |
0.9 |
0.98 |
0.98 |
chr4 | 85043345 | 85049688 | chr4:85043345-85049688:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
1.0 |
0.61 |
0.29 |
0.83 |
0.43 |
0.58 |
0.36 |
1.0 |
0.67 |
0.65 |
0.94 |
chr4 | 85160656 | 85166963 | chr4:85160656-85166963:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.84 |
0.83 |
0.02 |
0.88 |
0.61 |
0.02 |
0.49 |
0.85 |
0.86 |
0.8 |
0.97 |
chr4 | 85500717 | 85506879 | chr4:85500717-85506879:-:L1PA6:REF | L1PA6 | REF | full-length | ARHGAP24 | — | — | — | — | — | — | — | — | — | — | 0.75 |
— |
chr4 | 85622099 | 85628225 | chr4:85622099-85628225:-:L1PA4:REF | L1PA4 | REF | full-length | ARHGAP24 | — | — | — | — | — | — | — | — | — | — | 0.9 |
— |
chr4 | 85661518 | 85667643 | chr4:85661518-85667643:-:L1PA3:REF | L1PA3 | REF | full-length | ARHGAP24 | 0.71 |
0.96 |
0.94 |
— | 0.89 |
0.93 |
0.74 |
0.82 |
0.99 |
0.96 |
0.87 |
0.97 |
chr4 | 86070390 | 86076419 | chr4:86070390-86076419:-:L1PA2:REF | L1PA2 | REF | full-length | MAPK10 | 0.07 |
0.89 |
0.92 |
0.89 |
0.2 |
0.94 |
0.92 |
0.94 |
— | 0.04 |
0.89 |
0.94 |