Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 104321484 | 104327628 | chr4:104321484-104327628:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.57 |
0.65 |
0.04 |
0.79 |
0.48 |
0.2 |
0.58 |
0.91 |
0.48 |
0.61 |
0.88 |
chr4 | 104687024 | 104692901 | chr4:104687024-104692901:-:L1PA2:REF | L1PA2 | REF | full-length | CXXC4-AS1 | 0.1 |
0.97 |
0.89 |
0.6 |
0.09 |
0.83 |
0.75 |
0.9 |
0.93 |
0.84 |
0.86 |
0.98 |
chr4 | 104786988 | 104793014 | chr4:104786988-104793014:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.92 |
0.74 |
0.46 |
0.15 |
0.65 |
0.78 |
0.76 |
0.86 |
0.73 |
0.76 |
0.89 |
chr4 | 105307236 | 105313391 | chr4:105307236-105313391:-:L1PA2:REF | L1PA2 | REF | full-length | TET2-AS1 | 0.0 |
0.88 |
0.89 |
0.58 |
0.88 |
0.81 |
0.65 |
0.86 |
0.92 |
0.73 |
0.85 |
0.95 |
chr4 | 105408931 | 105413479 | chr4:105408931-105413479:+:L1PA6:REF | L1PA6 | REF | full-length | PPA2 | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr4 | 105729743 | 105735830 | chr4:105729743-105735830:-:L1PA5:REF | L1PA5 | REF | full-length | GSTCD | 0.94 |
0.94 |
0.97 |
0.96 |
0.92 |
0.97 |
0.97 |
0.93 |
0.96 |
0.96 |
0.98 |
0.97 |
chr4 | 105860130 | 105866235 | chr4:105860130-105866235:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.63 |
0.91 |
0.99 |
0.98 |
0.91 |
0.96 |
0.96 |
0.98 |
0.97 |
0.92 |
0.98 |
0.99 |
chr4 | 106119954 | 106121104 | chr4:106119954-106121104:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | TBCK | 0.73 |
0.34 |
0.97 |
0.97 |
0.46 |
0.89 |
0.98 |
0.97 |
0.97 |
0.91 |
0.98 |
0.85 |
chr4 | 106213354 | 106219380 | chr4:106213354-106219380:+:L1PA3:REF | L1PA3 | REF | full-length | TBCK | 0.97 |
0.79 |
0.98 |
0.98 |
0.42 |
0.96 |
0.99 |
0.93 |
0.97 |
0.58 |
0.98 |
0.99 |
chr4 | 106571057 | 106577070 | chr4:106571057-106577070:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.92 |
0.94 |
0.7 |
0.16 |
0.94 |
0.85 |
0.9 |
0.92 |
0.97 |
0.83 |
0.99 |
chr4 | 106935103 | 106941147 | chr4:106935103-106941147:+:L1PA2:REF | L1PA2 | REF | full-length | DKK2 | 0.02 |
0.53 |
0.86 |
0.51 |
0.59 |
0.87 |
0.73 |
0.76 |
0.96 |
0.8 |
0.8 |
0.98 |
chr4 | 107672082 | 107678199 | chr4:107672082-107678199:+:L1PA4:REF | L1PA4 | REF | full-length | PAPSS1 | 0.75 |
0.9 |
0.97 |
0.94 |
0.82 |
0.87 |
0.86 |
0.92 |
0.87 |
0.96 |
0.87 |
0.78 |
chr4 | 107956731 | 107962823 | chr4:107956731-107962823:+:L1PA5:REF | L1PA5 | REF | full-length | CYP2U1 | 0.16 |
— | — | — | 0.65 |
0.93 |
— | 0.91 |
— | 0.86 |
0.95 |
— |
chr4 | 108435420 | 108441589 | chr4:108435420-108441589:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.16 |
0.66 |
0.4 |
0.02 |
0.86 |
0.41 |
0.01 |
0.67 |
0.93 |
0.75 |
0.85 |
0.84 |
chr4 | 108503121 | 108509236 | chr4:108503121-108509236:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.06 |
— | 0.72 |
— | 0.83 |
0.7 |
0.43 |
0.82 |
0.89 |
0.73 |
0.89 |
0.84 |
chr4 | 109327158 | 109327160 | chr4:109327158-109327160:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.86 |
chr4 | 109775045 | 109781152 | chr4:109775045-109781152:+:L1PA5:REF | L1PA5 | REF | full-length | CFI | 0.7 |
0.96 |
0.97 |
0.54 |
0.84 |
0.85 |
0.97 |
0.85 |
0.98 |
0.88 |
0.86 |
0.97 |
chr4 | 109934344 | 109939674 | chr4:109934344-109939674:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | EGF | 0.16 |
0.94 |
0.9 |
0.5 |
0.91 |
0.66 |
0.34 |
0.75 |
0.97 |
0.95 |
0.89 |
0.98 |
chr4 | 110409693 | 110411445 | chr4:110409693-110411445:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.28 |
0.01 |
0.91 |
0.87 |
0.1 |
0.87 |
0.94 |
0.88 |
0.16 |
0.01 |
0.85 |
0.02 |
chr4 | 110690112 | 110693684 | chr4:110690112-110693684:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.05 |
0.92 |
0.98 |
0.67 |
0.09 |
0.87 |
0.75 |
0.86 |
0.95 |
0.96 |
0.93 |
0.98 |
chr4 | 110757482 | 110763634 | chr4:110757482-110763634:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.67 |
0.93 |
0.21 |
0.91 |
0.72 |
0.25 |
0.79 |
0.92 |
0.87 |
0.84 |
0.96 |
chr4 | 110870809 | 110876821 | chr4:110870809-110876821:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.1 |
0.8 |
0.98 |
0.51 |
0.06 |
0.93 |
0.65 |
0.95 |
0.9 |
0.97 |
0.96 |
0.99 |
chr4 | 111147043 | 111153194 | chr4:111147043-111153194:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.74 |
0.76 |
0.74 |
0.93 |
0.7 |
0.36 |
0.84 |
0.81 |
0.72 |
0.81 |
0.84 |
chr4 | 111336943 | 111342946 | chr4:111336943-111342946:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.87 |
0.93 |
0.74 |
0.13 |
0.96 |
0.79 |
0.81 |
0.92 |
0.02 |
0.94 |
0.99 |
chr4 | 111377903 | 111384069 | chr4:111377903-111384069:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.82 |
0.94 |
0.61 |
0.88 |
0.92 |
0.7 |
0.82 |
0.96 |
0.93 |
0.95 |
0.98 |
chr4 | 111626287 | 111628940 | chr4:111626287-111628940:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | 0.9 |
— | 0.82 |
0.9 |
0.53 |
0.9 |
— | 1.0 |
1.0 |
0.93 |
chr4 | 111707816 | 111707818 | chr4:111707816-111707818:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | 0.87 |
— | — | — | 0.91 |
— |
chr4 | 111894801 | 111900831 | chr4:111894801-111900831:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.79 |
0.88 |
0.8 |
0.06 |
0.81 |
0.79 |
0.75 |
0.94 |
0.88 |
0.78 |
0.95 |
chr4 | 112575290 | 112581425 | chr4:112575290-112581425:+:L1PA4:REF | L1PA4 | REF | full-length | ZGRF1 | 0.92 |
0.91 |
0.97 |
0.98 |
0.93 |
0.97 |
0.98 |
0.97 |
0.97 |
0.96 |
0.96 |
0.98 |
chr4 | 113424514 | 113430701 | chr4:113424514-113430701:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | — | — | 0.72 |
0.84 |
— | 0.9 |
0.95 |
— |
chr4 | 113489138 | 113495167 | chr4:113489138-113495167:-:L1PA2:REF | L1PA2 | REF | full-length | CAMK2D | 0.02 |
0.98 |
0.98 |
0.96 |
0.95 |
0.99 |
0.98 |
0.93 |
0.98 |
0.97 |
0.99 |
0.99 |
chr4 | 113852142 | 113858298 | chr4:113852142-113858298:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.93 |
— | 0.85 |
0.95 |
0.83 |
— | — | 0.92 |
0.99 |
0.98 |
chr4 | 115523614 | 115525735 | chr4:115523614-115525735:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.62 |
— |
chr4 | 116405696 | 116411731 | chr4:116405696-116411731:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.08 |
0.78 |
0.89 |
0.82 |
0.11 |
0.76 |
0.55 |
0.82 |
0.96 |
0.8 |
0.8 |
0.98 |
chr4 | 116775043 | 116781055 | chr4:116775043-116781055:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.67 |
0.71 |
0.66 |
0.26 |
0.58 |
0.3 |
0.55 |
0.92 |
0.66 |
0.71 |
0.97 |
chr4 | 117921983 | 117927986 | chr4:117921983-117927986:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.44 |
0.74 |
0.49 |
0.5 |
0.7 |
0.52 |
0.83 |
0.95 |
0.22 |
0.73 |
0.98 |
chr4 | 119061901 | 119068062 | chr4:119061901-119068062:-:L1PA3:REF | L1PA3 | REF | full-length | SYNPO2 | 0.01 |
0.19 |
0.94 |
0.9 |
0.37 |
0.9 |
0.59 |
0.93 |
0.46 |
0.03 |
0.95 |
0.92 |
chr4 | 119073638 | 119079786 | chr4:119073638-119079786:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
— | 0.7 |
— | 0.93 |
0.92 |
0.87 |
— | — | 0.71 |
0.96 |
0.86 |
chr4 | 119251686 | 119255882 | chr4:119251686-119255882:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | USP53 | — | — | — | — | — | — | — | — | — | — | 0.34 |
— |
chr4 | 119948726 | 119954758 | chr4:119948726-119954758:-:L1HS:REF | L1HS | REF | full-length | LINC02502 | 0.02 |
0.96 |
0.98 |
0.8 |
0.06 |
0.96 |
0.82 |
0.96 |
0.96 |
0.97 |
0.98 |
0.98 |
chr4 | 120256079 | 120256778 | chr4:120256079-120256778:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | — | 0.37 |
0.91 |
0.58 |
0.08 |
0.84 |
0.35 |
0.89 |
0.47 |
0.01 |
0.91 |
0.97 |
chr4 | 120460346 | 120464352 | chr4:120460346-120464352:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.12 |
0.68 |
0.0 |
0.47 |
0.38 |
0.0 |
0.52 |
0.7 |
0.82 |
0.57 |
0.64 |
chr4 | 120508813 | 120515250 | chr4:120508813-120515250:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.11 |
0.75 |
0.32 |
0.81 |
0.73 |
0.03 |
0.71 |
0.95 |
0.9 |
0.81 |
0.98 |
chr4 | 120645591 | 120648485 | chr4:120645591-120648485:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.03 |
0.57 |
0.97 |
0.81 |
0.1 |
0.91 |
0.82 |
0.9 |
0.91 |
0.05 |
0.96 |
0.98 |
chr4 | 120943774 | 120948151 | chr4:120943774-120948151:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.01 |
0.78 |
0.95 |
0.22 |
0.78 |
0.67 |
0.16 |
0.64 |
0.88 |
0.86 |
0.57 |
0.96 |
chr4 | 121000000 | 121002150 | chr4:121000000-121002150:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.65 |
0.73 |
0.01 |
0.79 |
0.54 |
0.02 |
0.39 |
0.85 |
0.81 |
0.56 |
0.72 |
chr4 | 121616231 | 121622378 | chr4:121616231-121622378:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
0.64 |
0.84 |
0.1 |
0.83 |
0.62 |
0.14 |
0.77 |
0.88 |
0.86 |
0.58 |
0.78 |
chr4 | 122110092 | 122116118 | chr4:122110092-122116118:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | — | 0.88 |
chr4 | 122492915 | 122499068 | chr4:122492915-122499068:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.67 |
0.92 |
0.87 |
0.65 |
0.92 |
0.85 |
0.72 |
0.88 |
0.95 |
0.81 |
0.93 |
0.97 |
chr4 | 122939633 | 122945796 | chr4:122939633-122945796:-:L1PA4:REF | L1PA4 | REF | full-length | SPATA5 | 0.97 |
0.02 |
0.98 |
0.92 |
0.95 |
0.99 |
0.98 |
0.98 |
0.98 |
0.98 |
0.98 |
0.98 |