Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 143672418 | 143674177 | chr4:143672418-143674177:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | FREM3 | 0.02 |
— | — | 0.3 |
0.87 |
0.63 |
0.46 |
0.58 |
0.8 |
— | 0.81 |
0.76 |
chr4 | 144391554 | 144397691 | chr4:144391554-144397691:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.65 |
0.94 |
0.51 |
0.91 |
0.79 |
0.32 |
0.82 |
0.96 |
0.85 |
0.75 |
0.99 |
chr4 | 144434630 | 144441108 | chr4:144434630-144441108:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.65 |
0.87 |
0.06 |
0.77 |
0.24 |
0.03 |
0.44 |
0.92 |
0.85 |
0.41 |
0.98 |
chr4 | 144768558 | 144774706 | chr4:144768558-144774706:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.05 |
0.96 |
0.68 |
0.43 |
0.88 |
0.37 |
0.92 |
0.95 |
0.76 |
0.81 |
0.97 |
chr4 | 144791618 | 144796881 | chr4:144791618-144796881:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.31 |
— | — | 0.49 |
0.67 |
0.82 |
chr4 | 144809658 | 144810951 | chr4:144809658-144810951:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.85 |
0.86 |
0.68 |
0.05 |
0.78 |
0.8 |
0.82 |
0.53 |
0.8 |
0.8 |
0.89 |
chr4 | 144836726 | 144842477 | chr4:144836726-144842477:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.02 |
0.76 |
0.73 |
0.03 |
0.84 |
0.55 |
0.04 |
0.63 |
0.94 |
0.63 |
0.52 |
0.97 |
chr4 | 145240809 | 145243951 | chr4:145240809-145243951:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.09 |
— | — | — | — | — |
chr4 | 145369388 | 145375369 | chr4:145369388-145375369:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.96 |
0.94 |
0.57 |
0.39 |
0.74 |
0.77 |
0.71 |
0.68 |
0.9 |
0.88 |
0.97 |
chr4 | 146304143 | 146304145 | chr4:146304143-146304145:+:L1HS:NONREF | L1HS | KNR | — | SLC10A7 | 0.81 |
0.89 |
— | 0.91 |
0.08 |
0.7 |
0.45 |
0.91 |
— | — | 0.92 |
0.92 |
chr4 | 146350018 | 146356052 | chr4:146350018-146356052:+:L1PA2:REF | L1PA2 | REF | full-length | SLC10A7 | 0.9 |
0.81 |
0.03 |
0.89 |
0.12 |
0.74 |
0.9 |
0.83 |
0.48 |
0.02 |
0.9 |
0.2 |
chr4 | 146552929 | 146559080 | chr4:146552929-146559080:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.81 |
0.8 |
0.69 |
0.92 |
0.77 |
0.57 |
0.86 |
0.9 |
0.79 |
0.84 |
0.96 |
chr4 | 146663286 | 146663613 | chr4:146663286-146663613:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.02 |
0.94 |
0.94 |
0.66 |
0.12 |
0.72 |
0.75 |
0.81 |
0.89 |
0.95 |
0.83 |
0.94 |
chr4 | 147255044 | 147256750 | chr4:147255044-147256750:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
0.51 |
0.92 |
0.92 |
0.97 |
0.92 |
0.39 |
0.5 |
0.93 |
0.87 |
0.5 |
0.98 |
chr4 | 147292169 | 147298625 | chr4:147292169-147298625:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.93 |
0.92 |
0.93 |
0.91 |
0.81 |
0.39 |
0.96 |
0.97 |
0.9 |
0.97 |
0.98 |
chr4 | 147465925 | 147471941 | chr4:147465925-147471941:-:L1PA4:REF | L1PA4 | REF | full-length | EDNRA | 0.02 |
0.87 |
— | 0.91 |
0.89 |
0.87 |
0.65 |
— | 0.96 |
— | 0.95 |
0.98 |
chr4 | 148082263 | 148086453 | chr4:148082263-148086453:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | NR3C2 | — | — | — | — | 0.94 |
0.97 |
0.71 |
— | — | 0.91 |
0.98 |
0.97 |
chr4 | 148317874 | 148323904 | chr4:148317874-148323904:-:L1PA2:REF | L1PA2 | REF | full-length | NR3C2 | 0.03 |
0.94 |
0.98 |
0.78 |
0.04 |
0.63 |
0.85 |
0.93 |
0.83 |
0.23 |
0.93 |
0.98 |
chr4 | 149088594 | 149094734 | chr4:149088594-149094734:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.81 |
0.67 |
0.37 |
0.92 |
0.78 |
0.33 |
0.93 |
0.95 |
0.48 |
0.95 |
0.99 |
chr4 | 149468022 | 149474136 | chr4:149468022-149474136:+:L1PA5:REF | L1PA5 | REF | full-length | IQCM | — | — | — | — | — | — | — | — | — | — | 0.2 |
— |
chr4 | 149848204 | 149854224 | chr4:149848204-149854224:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.73 |
0.94 |
— | 0.45 |
— | 0.76 |
— | — | 0.77 |
0.94 |
0.95 |
chr4 | 149915524 | 149921557 | chr4:149915524-149921557:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.86 |
0.94 |
0.87 |
0.22 |
0.92 |
0.77 |
0.93 |
0.96 |
0.04 |
0.95 |
0.96 |
chr4 | 150502570 | 150507814 | chr4:150502570-150507814:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | LRBA | 0.96 |
0.98 |
0.98 |
0.99 |
0.91 |
0.97 |
0.97 |
0.98 |
0.94 |
0.96 |
0.96 |
0.99 |
chr4 | 151511295 | 151517459 | chr4:151511295-151517459:+:L1PA3:REF | L1PA3 | REF | full-length | FAM160A1 | 0.18 |
0.89 |
0.9 |
0.93 |
0.92 |
0.84 |
0.91 |
0.8 |
0.94 |
0.9 |
0.92 |
0.91 |
chr4 | 151811653 | 151811655 | chr4:151811653-151811655:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.73 |
— | — | — | — | — | — | — | — | — | — |
chr4 | 153978080 | 153984223 | chr4:153978080-153984223:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
— | — | — | — | — | — | 0.76 |
— | — | — | — |
chr4 | 154108480 | 154114958 | chr4:154108480-154114958:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.31 |
— |
chr4 | 154891689 | 154898150 | chr4:154891689-154898150:+:L1PA8:REF | L1PA8 | REF | full-length | — | 0.0 |
0.95 |
0.92 |
0.11 |
0.84 |
0.62 |
0.88 |
0.53 |
0.84 |
0.63 |
0.73 |
0.95 |
chr4 | 156284540 | 156290599 | chr4:156284540-156290599:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.76 |
0.96 |
0.73 |
0.15 |
0.97 |
0.81 |
0.97 |
0.9 |
0.94 |
0.98 |
0.99 |
chr4 | 156367269 | 156373295 | chr4:156367269-156373295:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.13 |
0.97 |
0.86 |
0.9 |
0.96 |
0.63 |
0.97 |
0.96 |
0.48 |
0.98 |
0.98 |
chr4 | 157157345 | 157163450 | chr4:157157345-157163450:-:L1PA5:REF | L1PA5 | REF | full-length | GLRB | 0.0 |
— | 0.95 |
— | 0.95 |
0.93 |
0.03 |
0.93 |
1.0 |
0.93 |
0.97 |
1.0 |
chr4 | 157174892 | 157180916 | chr4:157174892-157180916:-:L1PA3:REF | L1PA3 | REF | full-length | GLRB | 0.16 |
0.0 |
0.99 |
0.6 |
0.68 |
0.88 |
0.21 |
0.86 |
— | 0.5 |
0.91 |
0.9 |
chr4 | 157986118 | 157986120 | chr4:157986118-157986120:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.94 |
0.92 |
— | — | — | — | 0.98 |
chr4 | 158084240 | 158090272 | chr4:158084240-158090272:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.58 |
0.76 |
— | 0.37 |
0.93 |
0.91 |
— | — | 0.58 |
0.67 |
0.94 |
chr4 | 158362555 | 158368702 | chr4:158362555-158368702:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.1 |
0.02 |
0.78 |
0.88 |
0.91 |
0.92 |
0.49 |
0.91 |
0.95 |
0.52 |
0.89 |
0.87 |
chr4 | 158544449 | 158550599 | chr4:158544449-158550599:-:L1PA4:REF | L1PA4 | REF | full-length | RXFP1 | 0.2 |
0.29 |
0.82 |
0.79 |
0.9 |
0.81 |
0.19 |
0.76 |
0.93 |
0.54 |
0.83 |
0.97 |
chr4 | 159528029 | 159534173 | chr4:159528029-159534173:-:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.24 |
— |
chr4 | 159709512 | 159715562 | chr4:159709512-159715562:-:L1PA3:REF | L1PA3 | REF | full-length | LINC02233 | 0.04 |
0.66 |
0.81 |
— | 0.62 |
0.68 |
0.91 |
— | — | 0.78 |
0.76 |
0.87 |
chr4 | 159804371 | 159810375 | chr4:159804371-159810375:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.03 |
0.71 |
0.05 |
0.7 |
0.66 |
0.71 |
0.71 |
0.9 |
0.46 |
0.59 |
0.94 |
chr4 | 160001351 | 160005462 | chr4:160001351-160005462:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.18 |
— |
chr4 | 160120217 | 160126215 | chr4:160120217-160126215:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.97 |
0.88 |
0.99 |
0.14 |
0.74 |
0.77 |
0.81 |
0.98 |
0.41 |
0.78 |
0.98 |
chr4 | 160151167 | 160157326 | chr4:160151167-160157326:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.84 |
— | 0.86 |
— | 0.45 |
0.19 |
0.62 |
0.96 |
— | — | 0.97 |
chr4 | 160574032 | 160580085 | chr4:160574032-160580085:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.97 |
0.81 |
0.73 |
0.15 |
0.77 |
0.77 |
0.83 |
0.97 |
0.75 |
0.8 |
0.99 |
chr4 | 160746380 | 160748536 | chr4:160746380-160748536:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | 0.85 |
0.23 |
— | 0.75 |
0.25 |
0.03 |
— | — | 0.06 |
0.19 |
1.0 |
chr4 | 162965871 | 162970335 | chr4:162965871-162970335:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.92 |
0.61 |
0.35 |
0.81 |
0.42 |
0.02 |
0.58 |
0.93 |
0.29 |
0.54 |
1.0 |
chr4 | 163000000 | 163005177 | chr4:163000000-163005177:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
0.9 |
0.57 |
0.11 |
0.92 |
0.47 |
0.23 |
0.44 |
0.95 |
0.22 |
0.43 |
0.98 |
chr4 | 163207006 | 163212968 | chr4:163207006-163212968:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.84 |
0.95 |
0.91 |
0.69 |
0.49 |
0.83 |
0.88 |
0.87 |
0.84 |
0.74 |
0.86 |
0.94 |
chr4 | 163632232 | 163638253 | chr4:163632232-163638253:+:L1PA2:REF | L1PA2 | REF | full-length | MARCH1 | 0.02 |
0.78 |
0.77 |
0.8 |
0.78 |
0.68 |
0.61 |
0.79 |
0.97 |
0.47 |
0.84 |
0.97 |
chr4 | 163719033 | 163725152 | chr4:163719033-163725152:-:L1PA5:REF | L1PA5 | REF | full-length | MARCH1 | 0.01 |
0.56 |
0.71 |
0.92 |
0.89 |
0.6 |
0.41 |
0.78 |
0.91 |
0.43 |
0.79 |
0.91 |
chr4 | 164100748 | 164106778 | chr4:164100748-164106778:+:L1PA2:REF | L1PA2 | REF | full-length | MARCH1 | 0.03 |
— | 0.88 |
— | 0.22 |
0.74 |
0.64 |
0.84 |
0.94 |
0.65 |
0.82 |
0.95 |