Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 59206451 | 59212619 | chr4:59206451-59212619:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.08 |
0.28 |
0.28 |
0.71 |
0.49 |
0.1 |
0.48 |
0.88 |
0.41 |
0.47 |
0.78 |
chr4 | 59392113 | 59394959 | chr4:59392113-59394959:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.01 |
0.25 |
0.24 |
0.4 |
0.82 |
0.42 |
0.08 |
0.35 |
0.92 |
0.44 |
0.31 |
0.49 |
chr4 | 59419693 | 59425790 | chr4:59419693-59425790:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
— | 0.65 |
— | 1.0 |
0.65 |
0.8 |
0.53 |
0.96 |
0.58 |
0.62 |
0.76 |
chr4 | 59428521 | 59430467 | chr4:59428521-59430467:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
chr4 | 60413392 | 60419835 | chr4:60413392-60419835:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | 0.31 |
— | — | — | 0.0 |
— | — | — | 0.16 |
— |
chr4 | 60695876 | 60701951 | chr4:60695876-60701951:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.72 |
0.57 |
0.24 |
0.92 |
0.9 |
0.04 |
0.99 |
0.92 |
0.66 |
0.92 |
0.62 |
chr4 | 60831273 | 60837284 | chr4:60831273-60837284:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.36 |
0.94 |
0.44 |
0.63 |
0.85 |
0.47 |
0.91 |
0.9 |
0.76 |
0.79 |
0.86 |
chr4 | 61011661 | 61017788 | chr4:61011661-61017788:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.78 |
0.86 |
0.23 |
0.82 |
0.64 |
0.19 |
0.69 |
0.92 |
0.79 |
0.68 |
0.57 |
chr4 | 61367239 | 61373248 | chr4:61367239-61373248:-:L1PA3:REF | L1PA3 | REF | full-length | ADGRL3 | 0.0 |
0.3 |
0.93 |
— | 0.25 |
0.75 |
0.55 |
0.82 |
0.88 |
0.0 |
0.87 |
0.8 |
chr4 | 61641294 | 61647303 | chr4:61641294-61647303:-:L1PA3:REF | L1PA3 | REF | full-length | ADGRL3 | 0.03 |
0.38 |
0.79 |
— | 0.24 |
— | 0.19 |
0.97 |
— | 0.0 |
0.98 |
0.86 |
chr4 | 61743721 | 61749869 | chr4:61743721-61749869:+:L1PA3:REF | L1PA3 | REF | full-length | ADGRL3 | 0.01 |
0.82 |
0.94 |
0.69 |
0.85 |
0.78 |
0.7 |
0.92 |
0.96 |
0.96 |
0.86 |
0.85 |
chr4 | 61939927 | 61945962 | chr4:61939927-61945962:-:L1HS:REF | L1HS | REF | full-length | ADGRL3 | 0.02 |
0.85 |
0.94 |
0.82 |
0.28 |
0.85 |
0.68 |
0.9 |
0.95 |
0.97 |
0.93 |
0.94 |
chr4 | 62088338 | 62094802 | chr4:62088338-62094802:-:L1PA7:REF | L1PA7 | REF | full-length | ADGRL3-AS1 | 0.01 |
0.24 |
0.66 |
0.13 |
0.73 |
0.15 |
0.05 |
0.29 |
0.87 |
0.68 |
0.28 |
0.57 |
chr4 | 62309260 | 62315383 | chr4:62309260-62315383:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
— | — | — | — | — | — | — | — | — | — | — |
chr4 | 62602276 | 62608302 | chr4:62602276-62608302:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | 0.77 |
— | — | 0.43 |
0.74 |
— |
chr4 | 62726948 | 62732969 | chr4:62726948-62732969:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.91 |
0.9 |
0.82 |
0.34 |
0.88 |
0.83 |
0.87 |
0.98 |
0.94 |
0.86 |
0.94 |
chr4 | 63097264 | 63098444 | chr4:63097264-63098444:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.62 |
0.4 |
0.29 |
0.78 |
0.42 |
0.32 |
0.47 |
0.93 |
0.51 |
0.49 |
0.61 |
chr4 | 63244989 | 63250959 | chr4:63244989-63250959:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | 0.74 |
— | 0.34 |
0.63 |
0.71 |
— | 0.75 |
0.82 |
0.68 |
0.75 |
chr4 | 64859153 | 64865171 | chr4:64859153-64865171:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.87 |
0.83 |
0.76 |
0.2 |
0.81 |
0.82 |
0.82 |
0.96 |
0.94 |
0.81 |
0.93 |
chr4 | 65052166 | 65058198 | chr4:65052166-65058198:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.83 |
0.84 |
0.64 |
0.83 |
0.73 |
0.62 |
0.79 |
0.89 |
0.86 |
0.7 |
0.88 |
chr4 | 65288237 | 65294261 | chr4:65288237-65294261:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.74 |
0.84 |
0.73 |
0.09 |
0.69 |
0.59 |
0.76 |
0.84 |
0.84 |
0.69 |
0.86 |
chr4 | 65993299 | 65999302 | chr4:65993299-65999302:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.46 |
0.66 |
0.33 |
0.03 |
0.82 |
0.36 |
0.76 |
0.76 |
0.01 |
0.8 |
0.94 |
chr4 | 66782770 | 66783455 | chr4:66782770-66783455:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.65 |
0.94 |
0.38 |
0.91 |
0.68 |
0.52 |
0.7 |
0.96 |
0.93 |
0.73 |
0.88 |
chr4 | 66981462 | 66984461 | chr4:66981462-66984461:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.03 |
— | — | — | 0.49 |
— |
chr4 | 67062389 | 67068523 | chr4:67062389-67068523:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.59 |
— | — | 0.66 |
— | 0.27 |
— | — | — | 0.67 |
0.79 |
chr4 | 67177042 | 67183058 | chr4:67177042-67183058:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.47 |
0.88 |
0.69 |
0.13 |
0.78 |
— | 0.82 |
0.95 |
0.88 |
0.79 |
0.9 |
chr4 | 67294850 | 67301125 | chr4:67294850-67301125:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.25 |
— |
chr4 | 67967414 | 67973442 | chr4:67967414-67973442:-:L1PA2:REF | L1PA2 | REF | full-length | TMPRSS11A | 0.24 |
0.96 |
0.86 |
0.67 |
0.61 |
0.76 |
0.87 |
0.75 |
0.8 |
0.82 |
0.57 |
0.97 |
chr4 | 68194058 | 68200204 | chr4:68194058-68200204:+:L1PA2:REF | L1PA2 | REF | full-length | FTLP10 | 0.1 |
0.98 |
— | — | — | — | — | — | 0.93 |
— | 0.71 |
— |
chr4 | 68420253 | 68426333 | chr4:68420253-68426333:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.42 |
0.55 |
0.88 |
0.74 |
0.83 |
0.77 |
0.48 |
0.79 |
0.96 |
0.81 |
0.88 |
0.98 |
chr4 | 68509804 | 68515820 | chr4:68509804-68515820:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | 0.75 |
0.27 |
— | 0.33 |
0.84 |
— | — | 0.74 |
0.47 |
0.62 |
chr4 | 68618785 | 68621995 | chr4:68618785-68621995:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
0.83 |
0.28 |
0.03 |
0.07 |
0.16 |
0.73 |
— | 0.82 |
0.36 |
0.11 |
0.79 |
chr4 | 68621991 | 68622809 | chr4:68621991-68622809:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
— | 0.83 |
— | — | 0.51 |
0.96 |
— | — | 0.8 |
0.49 |
0.98 |
chr4 | 68641689 | 68646386 | chr4:68641689-68646386:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | UGT2B15 | 0.03 |
0.98 |
0.74 |
0.16 |
0.87 |
0.52 |
0.97 |
0.63 |
0.89 |
0.76 |
0.51 |
0.99 |
chr4 | 68677498 | 68683661 | chr4:68677498-68683661:-:L1PA4:REF | L1PA4 | REF | full-length | UGT2B15 | 0.02 |
— | 0.31 |
0.04 |
0.76 |
0.2 |
0.38 |
0.29 |
0.89 |
0.37 |
0.21 |
0.9 |
chr4 | 68707017 | 68707021 | chr4:68707017-68707021:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.6 |
0.73 |
— | 0.91 |
0.8 |
— | — | 0.76 |
— |
chr4 | 68720494 | 68721028 | chr4:68720494-68721028:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.96 |
0.39 |
0.08 |
0.88 |
0.32 |
0.98 |
0.4 |
0.89 |
0.59 |
0.38 |
0.95 |
chr4 | 69660885 | 69661727 | chr4:69660885-69661727:-:L1P2:REF | L1P2 | REF | 3prime-truncated | UGT2A1 | 0.05 |
— | 0.03 |
0.09 |
— | 0.05 |
0.02 |
0.3 |
— | 0.04 |
0.07 |
0.83 |
chr4 | 69664009 | 69667565 | chr4:69664009-69667565:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.82 |
0.86 |
— | 0.09 |
0.76 |
0.71 |
0.77 |
0.91 |
0.36 |
0.65 |
0.96 |
chr4 | 70015396 | 70019676 | chr4:70015396-70019676:-:L1HS:REF | L1HS | REF | 3prime-truncated | HTN3 | 0.01 |
0.64 |
0.86 |
0.51 |
0.33 |
0.67 |
0.91 |
0.65 |
0.94 |
0.68 |
0.73 |
0.98 |
chr4 | 70207215 | 70213358 | chr4:70207215-70213358:-:L1PA6:REF | L1PA6 | REF | full-length | ODAM | — | — | — | — | — | — | 0.98 |
— | — | — | 0.43 |
— |
chr4 | 70417906 | 70424057 | chr4:70417906-70424057:-:L1PA4:REF | L1PA4 | REF | full-length | MUC7 | — | — | 0.36 |
0.12 |
0.77 |
0.28 |
0.32 |
0.33 |
— | 0.09 |
0.41 |
0.9 |
chr4 | 71053846 | 71059857 | chr4:71053846-71059857:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.52 |
0.97 |
0.81 |
0.06 |
0.92 |
0.89 |
0.97 |
0.81 |
0.72 |
0.9 |
0.43 |
chr4 | 71308427 | 71314945 | chr4:71308427-71314945:+:L1PA8:REF | L1PA8 | REF | full-length | SLC4A4 | 0.0 |
— | 1.0 |
— | — | — | 0.32 |
— | — | 0.89 |
0.67 |
0.17 |
chr4 | 71418823 | 71419847 | chr4:71418823-71419847:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | SLC4A4 | — | — | — | — | — | — | — | — | — | — | 0.48 |
— |
chr4 | 71791666 | 71797803 | chr4:71791666-71797803:-:L1PA6:REF | L1PA6 | REF | full-length | GC | 0.15 |
0.36 |
0.44 |
0.1 |
— | 0.31 |
0.18 |
0.42 |
— | 0.83 |
0.35 |
0.44 |
chr4 | 72119478 | 72125359 | chr4:72119478-72125359:+:L1P3:REF | L1P3 | REF | 3prime-truncated | NPFFR2 | — | — | — | — | — | — | — | — | — | — | 0.36 |
— |
chr4 | 72142299 | 72142568 | chr4:72142299-72142568:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | NPFFR2 | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr4 | 72163776 | 72169919 | chr4:72163776-72169919:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.1 |
0.64 |
— | 0.76 |
0.46 |
0.31 |
— | 0.88 |
0.74 |
0.41 |
0.26 |
chr4 | 72514834 | 72520993 | chr4:72514834-72520993:-:L1PA3:REF | L1PA3 | REF | full-length | ADAMTS3 | 0.73 |
0.82 |
0.84 |
0.56 |
0.75 |
0.92 |
0.69 |
0.77 |
0.98 |
0.91 |
0.83 |
0.85 |