Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 83182174 | 83188201 | chr1:83182174-83188201:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.97 |
0.96 |
0.68 |
0.07 |
0.94 |
0.32 |
0.91 |
0.65 |
0.09 |
0.85 |
0.98 |
chr1 | 83263607 | 83269631 | chr1:83263607-83269631:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.95 |
0.89 |
0.78 |
0.1 |
0.9 |
0.75 |
0.89 |
0.73 |
0.91 |
0.88 |
0.98 |
chr1 | 83350413 | 83356465 | chr1:83350413-83356465:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.97 |
0.92 |
0.67 |
0.59 |
0.87 |
0.8 |
0.75 |
0.96 |
0.94 |
0.75 |
0.82 |
chr1 | 84052389 | 84058406 | chr1:84052389-84058406:-:L1HS:REF | L1HS | REF | full-length | — | 0.7 |
— | 0.97 |
— | — | 0.94 |
— | — | — | 0.94 |
— | — |
chr1 | 84228930 | 84234940 | chr1:84228930-84234940:-:L1PA3:REF | L1PA3 | REF | full-length | PRKACB | 0.6 |
0.27 |
0.97 |
0.9 |
0.92 |
0.99 |
0.95 |
0.93 |
0.98 |
0.96 |
0.98 |
0.99 |
chr1 | 85508351 | 85514542 | chr1:85508351-85514542:+:L1PA6:REF | L1PA6 | REF | full-length | DDAH1 | 0.0 |
0.93 |
0.98 |
0.47 |
0.9 |
0.95 |
0.61 |
0.96 |
0.95 |
0.86 |
0.95 |
0.95 |
chr1 | 85641866 | 85648021 | chr1:85641866-85648021:+:L1PA3:REF | L1PA3 | REF | full-length | ZNHIT6 | 0.96 |
0.01 |
0.97 |
0.98 |
0.74 |
0.99 |
0.36 |
0.96 |
0.95 |
0.97 |
0.99 |
0.99 |
chr1 | 85748519 | 85754548 | chr1:85748519-85754548:+:L1HS:REF | L1HS | REF | full-length | COL24A1 | 0.02 |
0.9 |
0.85 |
0.8 |
0.06 |
0.89 |
0.93 |
0.92 |
0.95 |
0.86 |
0.97 |
0.95 |
chr1 | 85824940 | 85830944 | chr1:85824940-85830944:-:L1PA3:REF | L1PA3 | REF | full-length | COL24A1 | 0.01 |
0.0 |
0.96 |
0.66 |
0.87 |
0.92 |
0.53 |
0.87 |
0.98 |
0.81 |
0.72 |
0.98 |
chr1 | 85920984 | 85921431 | chr1:85920984-85921431:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | COL24A1 | 0.0 |
0.64 |
0.16 |
0.03 |
0.8 |
0.52 |
0.03 |
0.77 |
0.87 |
0.15 |
0.86 |
0.93 |
chr1 | 85927067 | 85933100 | chr1:85927067-85933100:+:L1HS:REF | L1HS | REF | full-length | COL24A1 | 0.09 |
0.84 |
0.89 |
0.8 |
0.11 |
0.9 |
0.83 |
0.89 |
0.91 |
0.86 |
0.95 |
0.91 |
chr1 | 86625551 | 86630498 | chr1:86625551-86630498:-:L1P1:REF | L1P1 | REF | 3prime-truncated | CLCA4-AS1 | 0.13 |
0.26 |
0.58 |
0.58 |
0.08 |
0.47 |
0.59 |
— | — | 0.46 |
0.41 |
0.38 |
chr1 | 86630495 | 86634080 | chr1:86630495-86634080:-:L1P1:REF | L1P1 | REF | 3prime-truncated | CLCA4-AS1 | 0.02 |
0.92 |
0.81 |
0.59 |
0.89 |
0.69 |
0.28 |
0.82 |
0.91 |
0.51 |
0.81 |
0.95 |
chr1 | 86679080 | 86685111 | chr1:86679080-86685111:-:L1HS:REF | L1HS | REF | full-length | CLCA4-AS1 | 0.47 |
0.77 |
0.94 |
0.81 |
0.09 |
0.89 |
0.94 |
0.92 |
0.9 |
0.9 |
0.9 |
0.98 |
chr1 | 88341842 | 88347867 | chr1:88341842-88347867:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.93 |
0.95 |
0.58 |
0.09 |
0.87 |
0.84 |
0.95 |
0.97 |
0.94 |
0.93 |
0.97 |
chr1 | 89033760 | 89034690 | chr1:89033760-89034690:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.03 |
0.95 |
0.68 |
0.64 |
0.82 |
0.79 |
0.43 |
0.82 |
0.88 |
0.61 |
0.87 |
0.93 |
chr1 | 89412579 | 89418615 | chr1:89412579-89418615:-:L1PA2:REF | L1PA2 | REF | full-length | GBP1P1 | 0.13 |
0.94 |
0.94 |
0.66 |
0.05 |
0.81 |
0.88 |
0.83 |
0.93 |
0.26 |
0.85 |
0.98 |
chr1 | 89747026 | 89753053 | chr1:89747026-89753053:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.76 |
0.89 |
0.98 |
0.85 |
0.1 |
0.87 |
0.89 |
0.89 |
0.8 |
0.95 |
0.94 |
0.88 |
chr1 | 90057280 | 90063312 | chr1:90057280-90063312:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.83 |
0.93 |
0.77 |
0.17 |
0.76 |
0.01 |
0.8 |
0.92 |
0.45 |
0.83 |
0.87 |
chr1 | 90166845 | 90172987 | chr1:90166845-90172987:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.7 |
0.93 |
0.2 |
0.87 |
0.68 |
0.25 |
0.84 |
0.95 |
0.83 |
0.75 |
0.76 |
chr1 | 90218768 | 90219842 | chr1:90218768-90219842:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.88 |
0.95 |
0.57 |
0.08 |
0.68 |
0.82 |
0.72 |
0.2 |
0.49 |
0.71 |
0.85 |
chr1 | 90997570 | 91000000 | chr1:90997570-91000000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | ZNF644 | 0.87 |
0.76 |
0.82 |
0.98 |
0.83 |
0.98 |
0.98 |
0.97 |
0.99 |
0.85 |
0.98 |
0.99 |
chr1 | 91130959 | 91132973 | chr1:91130959-91132973:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.02 |
0.86 |
0.95 |
0.79 |
0.9 |
0.53 |
0.58 |
0.54 |
0.84 |
0.91 |
0.54 |
0.86 |
chr1 | 91286649 | 91288366 | chr1:91286649-91288366:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | HFM1 | 0.83 |
0.63 |
0.96 |
0.85 |
0.49 |
0.87 |
0.85 |
0.92 |
0.94 |
0.83 |
0.94 |
0.98 |
chr1 | 91366637 | 91372747 | chr1:91366637-91372747:+:L1PA4:REF | L1PA4 | REF | full-length | HFM1 | 0.59 |
0.15 |
0.92 |
0.08 |
0.9 |
0.59 |
0.7 |
0.82 |
0.92 |
0.9 |
0.68 |
0.97 |
chr1 | 92430764 | 92436888 | chr1:92430764-92436888:-:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | 0.65 |
— | — | 0.46 |
— | — | 0.9 |
0.76 |
— |
chr1 | 92891523 | 92897666 | chr1:92891523-92897666:+:L1PA4:REF | L1PA4 | REF | full-length | DIPK1A | — | — | — | — | — | — | — | — | — | — | 0.89 |
— |
chr1 | 93509600 | 93511684 | chr1:93509600-93511684:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | FNBP1L | 0.93 |
0.86 |
0.97 |
0.97 |
0.93 |
0.98 |
0.98 |
0.99 |
0.98 |
0.98 |
0.97 |
0.98 |
chr1 | 93790652 | 93796681 | chr1:93790652-93796681:-:L1PA2:REF | L1PA2 | REF | full-length | BCAR3 | 0.36 |
0.97 |
0.98 |
0.98 |
0.76 |
0.98 |
0.98 |
0.97 |
0.94 |
0.95 |
0.98 |
0.99 |
chr1 | 94364259 | 94370410 | chr1:94364259-94370410:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
— | 0.81 |
0.6 |
0.86 |
0.65 |
0.93 |
— | — | 0.72 |
0.77 |
0.97 |
chr1 | 95210689 | 95216990 | chr1:95210689-95216990:-:L1PA6:REF | L1PA6 | REF | full-length | TMEM56-RWDD3 | 0.89 |
0.97 |
— | 0.93 |
0.94 |
0.8 |
0.97 |
0.96 |
0.97 |
— | 0.96 |
0.98 |
chr1 | 95292237 | 95298258 | chr1:95292237-95298258:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.18 |
0.99 |
0.96 |
0.87 |
0.25 |
0.92 |
0.93 |
0.93 |
0.96 |
0.9 |
0.93 |
1.0 |
chr1 | 95336285 | 95336287 | chr1:95336285-95336287:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.87 |
0.9 |
— | — | — | — | — | — | 0.72 |
— | 0.96 |
chr1 | 96051579 | 96057733 | chr1:96051579-96057733:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.52 |
— |
chr1 | 96243976 | 96247116 | chr1:96243976-96247116:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | LINC01787 | 0.01 |
0.94 |
0.86 |
0.59 |
0.94 |
0.91 |
0.62 |
— | 0.9 |
0.43 |
0.96 |
0.98 |
chr1 | 96433439 | 96439591 | chr1:96433439-96439591:-:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | — | — | 0.0 |
— | — | 0.0 |
— | — | — |
chr1 | 96604386 | 96610400 | chr1:96604386-96610400:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.87 |
0.89 |
0.84 |
0.77 |
0.91 |
0.87 |
0.92 |
0.93 |
0.91 |
0.89 |
0.92 |
chr1 | 96616037 | 96617994 | chr1:96616037-96617994:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
0.95 |
0.67 |
0.52 |
0.81 |
0.6 |
0.64 |
0.84 |
1.0 |
0.59 |
0.88 |
0.86 |
chr1 | 96651258 | 96657410 | chr1:96651258-96657410:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
— | — | 0.22 |
— | — | — | — | — | — | 0.91 |
— |
chr1 | 96853195 | 96859362 | chr1:96853195-96859362:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.98 |
0.96 |
— | 0.89 |
0.95 |
0.88 |
0.96 |
0.96 |
0.88 |
0.97 |
0.94 |
chr1 | 98588661 | 98592036 | chr1:98588661-98592036:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.02 |
0.87 |
0.89 |
0.72 |
0.84 |
0.86 |
0.86 |
0.85 |
0.93 |
0.8 |
0.83 |
0.98 |
chr1 | 98756374 | 98756376 | chr1:98756374-98756376:-:L1HS:NONREF | L1HS | KNR | — | SNX7 | — | — | — | — | — | — | 0.92 |
— | — | — | — | — |
chr1 | 98875638 | 98881734 | chr1:98875638-98881734:-:L1PA6:REF | L1PA6 | REF | full-length | PLPPR5 | 0.02 |
0.44 |
0.48 |
0.1 |
0.91 |
0.74 |
0.25 |
0.75 |
0.88 |
0.45 |
0.8 |
0.82 |
chr1 | 99159199 | 99162698 | chr1:99159199-99162698:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.18 |
— |
chr1 | 99399824 | 99405973 | chr1:99399824-99405973:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.13 |
0.72 |
0.71 |
0.52 |
0.93 |
0.89 |
0.71 |
0.93 |
0.98 |
0.67 |
0.93 |
0.97 |
chr1 | 99799027 | 99801045 | chr1:99799027-99801045:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.48 |
0.82 |
0.12 |
0.69 |
0.31 |
0.49 |
0.17 |
0.89 |
0.0 |
0.22 |
0.14 |
0.24 |
chr1 | 100199602 | 100206088 | chr1:100199602-100206088:+:L1PA7:REF | L1PA7 | REF | full-length | DBT | 0.95 |
0.99 |
0.97 |
0.98 |
0.88 |
0.97 |
0.98 |
0.98 |
0.97 |
0.96 |
0.82 |
0.97 |
chr1 | 100632238 | 100638390 | chr1:100632238-100638390:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01349 | 0.02 |
0.88 |
0.84 |
0.38 |
0.84 |
0.83 |
0.8 |
0.96 |
0.96 |
0.81 |
0.96 |
0.96 |
chr1 | 100819961 | 100826211 | chr1:100819961-100826211:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.31 |
0.33 |
0.64 |
0.22 |
0.34 |
0.34 |
0.19 |
0.83 |
— | 0.48 |
0.71 |
0.75 |
chr1 | 100843474 | 100846099 | chr1:100843474-100846099:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.53 |
— |