Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 102103367 | 102103369 | chr1:102103367-102103369:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.69 |
0.05 |
0.72 |
0.86 |
— | — | — | — | 0.92 |
chr1 | 102311534 | 102312930 | chr1:102311534-102312930:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.44 |
0.38 |
0.27 |
0.62 |
0.39 |
0.44 |
0.49 |
0.77 |
0.18 |
0.36 |
— |
chr1 | 102442083 | 102448229 | chr1:102442083-102448229:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.66 |
0.56 |
0.56 |
0.83 |
0.63 |
0.55 |
0.69 |
0.94 |
0.26 |
0.55 |
0.96 |
chr1 | 102826495 | 102832654 | chr1:102826495-102832654:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.99 |
0.64 |
0.69 |
0.89 |
0.91 |
0.04 |
0.8 |
0.96 |
0.56 |
0.83 |
0.98 |
chr1 | 102928102 | 102934113 | chr1:102928102-102934113:-:L1PA2:REF | L1PA2 | REF | full-length | COL11A1 | — | — | 0.78 |
0.65 |
0.02 |
0.85 |
0.64 |
0.93 |
— | 0.49 |
0.9 |
0.99 |
chr1 | 104056774 | 104058738 | chr1:104056774-104058738:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
— | 0.32 |
— | 0.12 |
0.19 |
0.21 |
— | — | 0.23 |
0.37 |
— |
chr1 | 104218010 | 104223212 | chr1:104218010-104223212:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.07 |
0.14 |
0.07 |
0.77 |
0.36 |
0.06 |
0.41 |
0.87 |
0.42 |
0.28 |
0.98 |
chr1 | 104658853 | 104664872 | chr1:104658853-104664872:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.34 |
0.91 |
0.81 |
0.06 |
0.83 |
0.88 |
0.85 |
0.95 |
0.06 |
0.84 |
0.99 |
chr1 | 104770247 | 104776278 | chr1:104770247-104776278:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.86 |
0.83 |
0.87 |
0.16 |
0.87 |
0.89 |
0.87 |
0.93 |
0.95 |
0.85 |
0.98 |
chr1 | 104843833 | 104849864 | chr1:104843833-104849864:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.81 |
0.87 |
0.76 |
0.05 |
0.8 |
0.88 |
0.86 |
0.98 |
0.95 |
0.85 |
0.92 |
chr1 | 104935148 | 104941180 | chr1:104935148-104941180:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.17 |
0.47 |
0.58 |
0.56 |
0.49 |
0.37 |
0.54 |
0.72 |
0.65 |
0.42 |
0.78 |
chr1 | 105265421 | 105265833 | chr1:105265421-105265833:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.4 |
0.7 |
0.4 |
0.84 |
0.5 |
0.01 |
0.58 |
0.95 |
0.87 |
0.46 |
0.96 |
chr1 | 105315153 | 105315155 | chr1:105315153-105315155:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.92 |
— | — | — | 0.88 |
— | — | — | — |
chr1 | 106329424 | 106335537 | chr1:106329424-106335537:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | 0.07 |
— | — | — | — | — | — | — | — |
chr1 | 107844024 | 107848032 | chr1:107844024-107848032:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | VAV3 | — | — | — | — | — | — | — | — | — | — | 0.97 |
— |
chr1 | 108358320 | 108364417 | chr1:108358320-108364417:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.95 |
0.98 |
0.82 |
0.93 |
0.84 |
0.63 |
0.22 |
0.56 |
0.91 |
0.48 |
0.75 |
0.87 |
chr1 | 111335211 | 111341371 | chr1:111335211-111341371:+:L1PA3:REF | L1PA3 | REF | full-length | PIFO | 0.01 |
0.68 |
0.56 |
0.07 |
0.86 |
0.51 |
0.3 |
0.55 |
0.78 |
0.33 |
0.55 |
0.76 |
chr1 | 112154799 | 112160810 | chr1:112154799-112160810:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.85 |
— | 0.66 |
0.08 |
0.75 |
0.62 |
0.73 |
0.85 |
— | — | 0.77 |
chr1 | 112199142 | 112205303 | chr1:112199142-112205303:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.69 |
0.45 |
0.06 |
0.88 |
0.39 |
0.03 |
0.45 |
0.84 |
0.03 |
0.45 |
0.29 |
chr1 | 112211668 | 112217805 | chr1:112211668-112217805:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.38 |
— |
chr1 | 112221418 | 112227438 | chr1:112221418-112227438:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.88 |
0.91 |
0.73 |
0.5 |
0.78 |
0.89 |
0.72 |
0.89 |
0.69 |
0.8 |
0.77 |
chr1 | 113497220 | 113500000 | chr1:113497220-113500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | MAGI3 | 0.65 |
0.99 |
0.98 |
0.97 |
0.2 |
0.98 |
0.99 |
0.97 |
0.77 |
0.98 |
0.99 |
0.98 |
chr1 | 113633560 | 113639380 | chr1:113633560-113639380:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | MAGI3 | 0.64 |
0.62 |
0.94 |
0.98 |
0.89 |
0.89 |
0.93 |
0.96 |
0.98 |
0.92 |
0.98 |
0.98 |
chr1 | 114239262 | 114241429 | chr1:114239262-114241429:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.02 |
0.89 |
0.81 |
0.06 |
0.91 |
0.54 |
0.12 |
0.64 |
0.9 |
0.78 |
0.56 |
0.86 |
chr1 | 114303991 | 114310120 | chr1:114303991-114310120:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.75 |
0.68 |
0.47 |
0.69 |
0.76 |
0.59 |
0.79 |
0.74 |
0.63 |
0.67 |
0.76 |
chr1 | 115147821 | 115153959 | chr1:115147821-115153959:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.5 |
0.9 |
0.79 |
0.39 |
0.79 |
— | 0.55 |
— | 0.04 |
0.45 |
0.63 |
chr1 | 116051913 | 116058065 | chr1:116051913-116058065:+:L1PA3:REF | L1PA3 | REF | full-length | SLC22A15 | 0.06 |
0.97 |
0.98 |
0.96 |
0.94 |
0.97 |
0.85 |
0.81 |
0.96 |
0.93 |
0.92 |
0.97 |
chr1 | 116974738 | 116980865 | chr1:116974738-116980865:+:L1PA5:REF | L1PA5 | REF | full-length | PTGFRN | 0.98 |
0.97 |
0.96 |
0.92 |
0.94 |
0.83 |
0.92 |
0.73 |
0.99 |
0.97 |
0.62 |
0.98 |
chr1 | 117720673 | 117726833 | chr1:117720673-117726833:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.37 |
0.95 |
— | — | 0.85 |
— | 0.51 |
— | — | 0.49 |
0.81 |
— |
chr1 | 118280887 | 118286905 | chr1:118280887-118286905:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.97 |
0.95 |
0.52 |
0.52 |
0.77 |
0.77 |
0.85 |
0.95 |
0.95 |
0.71 |
0.63 |
chr1 | 118568232 | 118574250 | chr1:118568232-118574250:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.24 |
0.77 |
0.1 |
0.28 |
0.52 |
0.08 |
0.58 |
0.8 |
0.55 |
0.33 |
0.27 |
chr1 | 118780673 | 118781737 | chr1:118780673-118781737:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | 0.0 |
— | 0.0 |
— | 0.5 |
— | — | — | — | — | 0.0 |
chr1 | 118831438 | 118837583 | chr1:118831438-118837583:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.66 |
0.83 |
0.12 |
0.79 |
0.77 |
0.56 |
0.64 |
0.89 |
0.57 |
0.51 |
0.76 |
chr1 | 118852351 | 118858380 | chr1:118852351-118858380:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.49 |
0.95 |
0.81 |
0.12 |
0.88 |
0.94 |
0.71 |
0.72 |
0.89 |
0.79 |
0.92 |
chr1 | 119020631 | 119026648 | chr1:119020631-119026648:+:L1PA3:REF | L1PA3 | REF | full-length | WARS2 | 0.55 |
0.97 |
0.98 |
0.95 |
0.9 |
0.95 |
0.98 |
0.89 |
0.94 |
0.95 |
0.97 |
0.92 |
chr1 | 119152510 | 119157417 | chr1:119152510-119157417:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | WARS2-AS1 | 0.96 |
0.98 |
0.97 |
0.98 |
0.94 |
0.97 |
0.98 |
0.95 |
0.97 |
0.96 |
0.98 |
0.97 |
chr1 | 119497647 | 119500000 | chr1:119497647-119500000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | HSD3B1 | 0.0 |
0.86 |
0.81 |
0.08 |
0.8 |
0.5 |
0.18 |
0.47 |
0.85 |
0.56 |
0.38 |
0.71 |
chr1 | 120478166 | 120480272 | chr1:120478166-120480272:+:L1P2:REF | L1P2 | REF | 3prime-truncated | LOC100996724 | 0.95 |
0.97 |
0.96 |
0.38 |
0.84 |
0.98 |
0.93 |
0.96 |
0.96 |
0.87 |
0.95 |
0.85 |
chr1 | 120480723 | 120486850 | chr1:120480723-120486850:+:L1PA6:REF | L1PA6 | REF | full-length | LOC100996724 | — | 0.38 |
0.38 |
— | 0.31 |
— | 0.3 |
0.34 |
— | 0.33 |
0.42 |
— |
chr1 | 121532230 | 121538261 | chr1:121532230-121538261:-:L1HS:REF | L1HS | REF | full-length | EMBP1 | 0.04 |
0.96 |
0.96 |
0.86 |
0.06 |
0.87 |
0.98 |
0.86 |
0.91 |
0.96 |
0.87 |
0.95 |
chr1 | 121574289 | 121580421 | chr1:121574289-121580421:+:L1PA3:REF | L1PA3 | REF | full-length | EMBP1 | 0.02 |
0.93 |
0.95 |
0.55 |
0.88 |
0.81 |
0.98 |
0.73 |
0.94 |
0.94 |
0.8 |
0.86 |
chr1 | 121598206 | 121604319 | chr1:121598206-121604319:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.89 |
0.77 |
0.15 |
0.88 |
0.32 |
0.94 |
0.29 |
0.79 |
0.5 |
0.35 |
0.59 |
chr1 | 125122961 | 125129081 | chr1:125122961-125129081:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.34 |
0.36 |
0.27 |
0.4 |
0.39 |
0.33 |
0.35 |
0.43 |
0.31 |
0.38 |
0.35 |
chr1 | 143558090 | 143564124 | chr1:143558090-143564124:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
— | 0.96 |
0.73 |
0.09 |
0.46 |
0.64 |
0.54 |
— | 0.87 |
0.73 |
0.86 |
chr1 | 145553326 | 145559446 | chr1:145553326-145559446:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.05 |
0.94 |
0.94 |
0.68 |
0.9 |
0.88 |
0.59 |
0.83 |
0.95 |
0.77 |
0.87 |
0.97 |
chr1 | 145559888 | 145561994 | chr1:145559888-145561994:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.24 |
0.85 |
0.74 |
0.09 |
0.83 |
0.68 |
0.18 |
0.62 |
0.76 |
0.45 |
0.67 |
0.67 |
chr1 | 146053739 | 146054360 | chr1:146053739-146054360:-:L1P2:REF | L1P2 | REF | 3prime-truncated | LINC01719 | 0.68 |
— | 0.73 |
0.6 |
0.84 |
0.69 |
0.78 |
0.75 |
— | 0.82 |
0.69 |
0.75 |
chr1 | 146717192 | 146723218 | chr1:146717192-146723218:-:L1HS:REF | L1HS | REF | full-length | HYDIN2 | 0.09 |
0.97 |
0.95 |
0.78 |
0.14 |
0.93 |
0.88 |
0.89 |
0.94 |
0.94 |
0.89 |
0.95 |
chr1 | 147006520 | 147012672 | chr1:147006520-147012672:+:L1PA5:REF | L1PA5 | REF | full-length | LOC728989 | 0.0 |
0.9 |
0.57 |
0.11 |
0.67 |
0.44 |
0.03 |
0.43 |
— | 0.45 |
0.35 |
0.64 |
chr1 | 147063913 | 147070066 | chr1:147063913-147070066:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.79 |
0.66 |
0.35 |
0.82 |
0.5 |
0.48 |
0.49 |
0.78 |
0.57 |
0.46 |
0.72 |