Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6 | 57451781 | 57457923 | chr6:57451781-57457923:-:L1PA4:REF | L1PA4 | REF | full-length | PRIM2 | 0.86 |
0.9 |
0.84 |
0.98 |
0.81 |
0.92 |
0.97 |
0.91 |
0.85 |
0.81 |
0.87 |
0.93 |
chr6 | 57700427 | 57706542 | chr6:57700427-57706542:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.77 |
0.72 |
0.03 |
0.9 |
0.54 |
0.15 |
0.6 |
0.71 |
0.64 |
0.68 |
0.94 |
chr6 | 58226623 | 58232747 | chr6:58226623-58232747:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.29 |
0.45 |
0.17 |
0.74 |
0.45 |
0.21 |
— | — | 0.5 |
0.63 |
0.85 |
chr6 | 58393798 | 58399940 | chr6:58393798-58399940:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.78 |
0.55 |
0.51 |
0.85 |
0.67 |
0.21 |
0.74 |
0.74 |
0.13 |
0.73 |
0.95 |
chr6 | 60344718 | 60350882 | chr6:60344718-60350882:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.52 |
0.78 |
0.23 |
0.92 |
0.55 |
— | 0.64 |
0.93 |
0.51 |
0.59 |
0.85 |
chr6 | 60599849 | 60605969 | chr6:60599849-60605969:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.18 |
0.08 |
0.06 |
0.85 |
0.3 |
0.03 |
0.23 |
0.8 |
0.03 |
0.36 |
0.86 |
chr6 | 60616507 | 60622518 | chr6:60616507-60622518:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.39 |
0.48 |
0.57 |
0.77 |
0.61 |
0.49 |
0.68 |
0.78 |
0.41 |
0.58 |
0.86 |
chr6 | 60629792 | 60635918 | chr6:60629792-60635918:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.12 |
0.07 |
0.07 |
0.69 |
0.27 |
0.17 |
0.35 |
0.77 |
0.05 |
0.27 |
0.75 |
chr6 | 60980953 | 60987074 | chr6:60980953-60987074:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.2 |
0.17 |
0.27 |
0.82 |
0.41 |
0.13 |
— | — | 0.08 |
0.39 |
0.93 |
chr6 | 61047402 | 61053558 | chr6:61047402-61053558:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.2 |
0.05 |
0.16 |
0.71 |
0.44 |
0.03 |
0.51 |
0.85 |
0.02 |
0.4 |
0.92 |
chr6 | 61128036 | 61134432 | chr6:61128036-61134432:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | 0.0 |
— | — | — | — | — |
chr6 | 61160548 | 61163754 | chr6:61160548-61163754:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.03 |
0.15 |
0.17 |
0.19 |
0.68 |
0.41 |
0.04 |
0.52 |
0.83 |
0.02 |
0.37 |
0.87 |
chr6 | 61531491 | 61537897 | chr6:61531491-61537897:+:L1PA7:REF | L1PA7 | REF | full-length | KHDRBS2 | — | — | 0.02 |
0.0 |
— | — | — | 0.15 |
— | — | 0.06 |
— |
chr6 | 62087592 | 62089684 | chr6:62087592-62089684:-:L1P3:REF | L1P3 | REF | 3prime-truncated | KHDRBS2 | 0.0 |
0.09 |
0.31 |
0.06 |
0.84 |
0.16 |
0.01 |
0.22 |
0.8 |
0.03 |
0.11 |
0.95 |
chr6 | 62491726 | 62498187 | chr6:62491726-62498187:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | 0.34 |
— | — | 0.3 |
0.68 |
0.98 |
chr6 | 62555076 | 62555453 | chr6:62555076-62555453:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.51 |
0.67 |
0.28 |
0.87 |
0.66 |
0.27 |
0.68 |
0.96 |
0.27 |
0.72 |
0.97 |
chr6 | 62658301 | 62658303 | chr6:62658301-62658303:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | 0.97 |
— | — | 0.97 |
chr6 | 62817772 | 62818916 | chr6:62817772-62818916:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.03 |
0.28 |
0.14 |
0.03 |
0.84 |
0.47 |
0.23 |
0.5 |
0.95 |
0.09 |
0.48 |
0.99 |
chr6 | 63052978 | 63054313 | chr6:63052978-63054313:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.0 |
0.14 |
— | 0.26 |
0.48 |
0.47 |
0.01 |
0.49 |
0.81 |
0.22 |
0.46 |
0.89 |
chr6 | 63362245 | 63363929 | chr6:63362245-63363929:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
— | 0.8 |
— | — | — | — | — | — | — | 0.75 |
— |
chr6 | 63848381 | 63851875 | chr6:63848381-63851875:+:L1PA8:REF | L1PA8 | REF | 3prime-truncated | EYS | — | — | 0.67 |
— | — | — | — | — | — | — | 0.93 |
— |
chr6 | 64389760 | 64395796 | chr6:64389760-64395796:+:L1PA2:REF | L1PA2 | REF | full-length | EYS | 0.02 |
0.2 |
0.88 |
0.69 |
0.17 |
0.67 |
0.65 |
0.76 |
0.89 |
0.94 |
0.88 |
0.99 |
chr6 | 64896140 | 64899388 | chr6:64896140-64899388:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | EYS | 0.0 |
0.77 |
0.54 |
0.49 |
0.57 |
0.22 |
0.01 |
0.66 |
0.77 |
0.86 |
0.38 |
0.98 |
chr6 | 66166505 | 66170098 | chr6:66166505-66170098:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
— | — | — | — | — | 0.64 |
— | — | — | 0.73 |
— |
chr6 | 66540927 | 66547077 | chr6:66540927-66547077:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
— | 0.37 |
0.12 |
— | 0.32 |
0.14 |
0.25 |
— | 0.37 |
0.21 |
— |
chr6 | 66630834 | 66636983 | chr6:66630834-66636983:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.75 |
0.44 |
0.18 |
0.53 |
0.55 |
0.57 |
0.69 |
0.57 |
0.56 |
0.73 |
0.58 |
chr6 | 67095414 | 67101549 | chr6:67095414-67101549:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.16 |
0.56 |
0.09 |
0.09 |
0.26 |
0.14 |
0.03 |
0.22 |
0.61 |
0.12 |
0.44 |
0.63 |
chr6 | 67295505 | 67301096 | chr6:67295505-67301096:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.22 |
— | — | — | 0.22 |
— |
chr6 | 68283873 | 68290045 | chr6:68283873-68290045:+:L1PA3:REF | L1PA3 | REF | full-length | LINC02549 | 0.29 |
0.77 |
0.45 |
0.22 |
0.85 |
0.54 |
0.18 |
0.57 |
0.79 |
0.47 |
0.45 |
0.97 |
chr6 | 69439539 | 69445568 | chr6:69439539-69445568:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.53 |
0.68 |
0.6 |
0.83 |
0.71 |
0.31 |
0.73 |
0.85 |
0.65 |
0.66 |
0.96 |
chr6 | 69495362 | 69500000 | chr6:69495362-69500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.45 |
0.66 |
0.3 |
0.58 |
0.6 |
0.36 |
0.62 |
0.93 |
0.69 |
0.69 |
0.97 |
chr6 | 69515143 | 69521169 | chr6:69515143-69521169:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.76 |
0.65 |
0.57 |
0.24 |
0.68 |
0.45 |
0.72 |
0.84 |
0.34 |
0.75 |
0.93 |
chr6 | 70010347 | 70016552 | chr6:70010347-70016552:+:L1HS:REF | L1HS | REF | full-length | COL19A1 | 0.02 |
0.63 |
0.94 |
0.63 |
0.09 |
0.87 |
0.8 |
0.83 |
0.95 |
0.92 |
0.8 |
0.98 |
chr6 | 70317563 | 70323719 | chr6:70317563-70323719:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.62 |
0.36 |
0.96 |
0.49 |
0.9 |
0.78 |
0.71 |
0.75 |
0.96 |
0.92 |
0.81 |
0.83 |
chr6 | 70914791 | 70920557 | chr6:70914791-70920557:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | B3GAT2 | 0.01 |
0.06 |
0.84 |
0.05 |
0.81 |
0.42 |
0.02 |
0.49 |
0.82 |
0.72 |
0.22 |
0.94 |
chr6 | 70944092 | 70950217 | chr6:70944092-70950217:+:L1PA3:REF | L1PA3 | REF | full-length | B3GAT2 | 0.02 |
0.74 |
0.92 |
0.7 |
0.93 |
0.76 |
0.72 |
0.83 |
0.93 |
0.94 |
0.83 |
0.98 |
chr6 | 71270514 | 71276665 | chr6:71270514-71276665:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.83 |
0.96 |
0.88 |
0.91 |
0.94 |
— | 0.96 |
0.98 |
0.92 |
0.96 |
0.97 |
chr6 | 71355361 | 71361788 | chr6:71355361-71361788:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.02 |
— | — | — | 0.41 |
— | 0.3 |
— | — | — | 0.67 |
0.79 |
chr6 | 72006343 | 72012487 | chr6:72006343-72012487:+:L1PA4:REF | L1PA4 | REF | full-length | RIMS1 | — | — | — | — | 0.99 |
— | 0.01 |
— | — | — | 0.79 |
— |
chr6 | 72122505 | 72126122 | chr6:72122505-72126122:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | RIMS1 | 0.0 |
0.12 |
0.52 |
0.07 |
0.73 |
0.39 |
0.03 |
0.71 |
0.86 |
0.24 |
0.6 |
0.73 |
chr6 | 72469432 | 72475586 | chr6:72469432-72475586:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.9 |
0.32 |
0.85 |
0.51 |
0.89 |
0.95 |
0.39 |
0.95 |
0.96 |
0.81 |
0.92 |
0.84 |
chr6 | 72570139 | 72576167 | chr6:72570139-72576167:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.95 |
0.59 |
0.96 |
0.76 |
0.09 |
0.97 |
0.75 |
0.96 |
0.93 |
0.9 |
0.97 |
0.94 |
chr6 | 72988654 | 72994686 | chr6:72988654-72994686:-:L1HS:REF | L1HS | REF | full-length | KCNQ5 | 0.44 |
0.91 |
0.97 |
0.84 |
0.1 |
0.98 |
0.88 |
0.96 |
0.96 |
0.97 |
0.97 |
0.92 |
chr6 | 73835382 | 73841425 | chr6:73835382-73841425:-:L1PA2:REF | L1PA2 | REF | full-length | CD109 | 0.01 |
0.45 |
0.93 |
0.89 |
0.32 |
0.93 |
0.76 |
0.92 |
0.79 |
0.22 |
0.89 |
0.88 |
chr6 | 73917512 | 73923690 | chr6:73917512-73923690:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.51 |
0.47 |
0.17 |
0.8 |
0.47 |
0.32 |
— | 0.93 |
0.15 |
0.8 |
0.97 |
chr6 | 74013311 | 74013637 | chr6:74013311-74013637:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.07 |
0.95 |
0.79 |
0.69 |
0.91 |
0.93 |
0.47 |
0.89 |
0.96 |
0.5 |
0.97 |
0.98 |
chr6 | 74026849 | 74030817 | chr6:74026849-74030817:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.48 |
0.46 |
0.42 |
0.81 |
0.7 |
0.08 |
0.84 |
0.88 |
0.22 |
0.84 |
0.97 |
chr6 | 74337744 | 74343920 | chr6:74337744-74343920:-:L1PA5:REF | L1PA5 | REF | full-length | LOC101928516 | 0.0 |
0.56 |
0.41 |
0.55 |
0.91 |
0.88 |
0.09 |
0.92 |
0.94 |
0.06 |
0.94 |
0.74 |
chr6 | 74660015 | 74666151 | chr6:74660015-74666151:+:L1PA4:REF | L1PA4 | REF | full-length | LOC101928516 | 0.01 |
0.36 |
0.53 |
0.81 |
0.87 |
0.88 |
0.18 |
0.92 |
0.89 |
0.05 |
0.91 |
0.95 |
chr6 | 74903761 | 74909912 | chr6:74903761-74909912:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.89 |
0.8 |
0.97 |
0.89 |
0.96 |
0.8 |
0.97 |
0.98 |
0.56 |
0.96 |
0.99 |