Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9 | 1193067 | 1196260 | chr9:1193067-1196260:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.97 |
0.95 |
0.11 |
0.9 |
0.86 |
0.82 |
0.77 |
0.91 |
0.68 |
0.72 |
0.59 |
chr9 | 1223881 | 1229900 | chr9:1223881-1229900:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | — | — | 0.11 |
— | — | — | — | — | 0.55 |
— |
chr9 | 1393108 | 1399515 | chr9:1393108-1399515:+:L1PA8:REF | L1PA8 | REF | full-length | — | 0.0 |
0.79 |
0.75 |
0.06 |
0.5 |
0.3 |
0.0 |
0.22 |
— | 0.22 |
0.48 |
0.07 |
chr9 | 1423228 | 1424869 | chr9:1423228-1424869:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.89 |
0.89 |
0.11 |
0.76 |
0.71 |
0.49 |
0.62 |
0.79 |
0.18 |
0.59 |
— |
chr9 | 1447164 | 1447166 | chr9:1447164-1447166:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.08 |
— | — | — | — | — | — |
chr9 | 1558434 | 1564568 | chr9:1558434-1564568:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.84 |
— |
chr9 | 1569017 | 1575045 | chr9:1569017-1575045:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.97 |
0.93 |
0.76 |
0.7 |
0.83 |
0.74 |
0.83 |
0.88 |
0.78 |
0.83 |
0.84 |
chr9 | 1583448 | 1589502 | chr9:1583448-1589502:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.56 |
0.68 |
0.08 |
0.85 |
0.56 |
0.5 |
0.54 |
0.8 |
0.37 |
0.53 |
0.48 |
chr9 | 1749540 | 1755665 | chr9:1749540-1755665:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.55 |
0.65 |
0.14 |
0.74 |
0.6 |
0.25 |
0.53 |
0.73 |
0.16 |
0.53 |
0.43 |
chr9 | 2898327 | 2900229 | chr9:2898327-2900229:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.84 |
0.75 |
0.32 |
0.85 |
0.73 |
0.77 |
0.67 |
0.94 |
0.48 |
0.7 |
0.88 |
chr9 | 4248929 | 4254064 | chr9:4248929-4254064:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | GLIS3 | 0.0 |
0.87 |
0.95 |
0.99 |
0.92 |
0.98 |
— | 0.99 |
0.96 |
0.91 |
0.97 |
0.96 |
chr9 | 4605799 | 4611811 | chr9:4605799-4611811:+:L1PA3:REF | L1PA3 | REF | full-length | SPATA6L | 0.8 |
0.9 |
0.98 |
0.9 |
0.13 |
0.97 |
0.97 |
0.97 |
0.95 |
0.12 |
0.98 |
0.98 |
chr9 | 4915073 | 4921190 | chr9:4915073-4921190:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.96 |
0.97 |
0.88 |
0.85 |
0.89 |
0.87 |
0.96 |
0.77 |
0.95 |
0.89 |
0.94 |
0.97 |
chr9 | 5152748 | 5153485 | chr9:5152748-5153485:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.58 |
— |
chr9 | 5471814 | 5477960 | chr9:5471814-5477960:-:L1PA5:REF | L1PA5 | REF | full-length | CD274 | 0.77 |
0.85 |
0.92 |
0.67 |
0.9 |
0.93 |
0.28 |
1.0 |
— | 0.92 |
0.73 |
0.97 |
chr9 | 5491417 | 5491419 | chr9:5491417-5491419:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.99 |
0.94 |
— | 0.98 |
— | — | 0.97 |
0.94 |
— | 0.98 |
chr9 | 5681125 | 5684273 | chr9:5681125-5684273:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | RIC1 | — | — | — | — | — | — | — | — | — | 0.99 |
— | 0.98 |
chr9 | 5779201 | 5782046 | chr9:5779201-5782046:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | ERMP1 | — | — | — | — | — | — | — | — | — | — | 0.99 |
— |
chr9 | 6058415 | 6063780 | chr9:6058415-6063780:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | 0.87 |
0.82 |
0.94 |
0.93 |
0.65 |
0.1 |
0.7 |
0.99 |
0.6 |
0.85 |
0.99 |
chr9 | 6135847 | 6141850 | chr9:6135847-6141850:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.34 |
0.94 |
0.95 |
0.93 |
0.27 |
0.85 |
0.88 |
0.86 |
0.94 |
0.93 |
0.92 |
0.97 |
chr9 | 6376264 | 6382430 | chr9:6376264-6382430:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.84 |
0.82 |
0.93 |
0.85 |
0.89 |
0.79 |
0.88 |
0.92 |
0.73 |
0.95 |
0.98 |
chr9 | 7216261 | 7217171 | chr9:7216261-7217171:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.02 |
0.41 |
0.35 |
0.07 |
0.59 |
0.62 |
0.04 |
0.66 |
0.66 |
0.35 |
0.54 |
0.49 |
chr9 | 7277685 | 7283833 | chr9:7277685-7283833:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.03 |
— | 0.39 |
0.02 |
0.89 |
0.5 |
0.09 |
0.61 |
0.88 |
0.39 |
0.72 |
0.32 |
chr9 | 7712932 | 7719043 | chr9:7712932-7719043:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.04 |
0.53 |
0.6 |
— | 0.78 |
0.65 |
0.45 |
0.7 |
0.96 |
0.42 |
0.68 |
0.81 |
chr9 | 7741405 | 7741407 | chr9:7741405-7741407:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.28 |
— | — | — | — | — | — | — | — | — | — |
chr9 | 8079466 | 8085615 | chr9:8079466-8085615:-:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.19 |
— |
chr9 | 9931213 | 9937220 | chr9:9931213-9937220:+:L1PA3:REF | L1PA3 | REF | full-length | PTPRD | 0.02 |
0.66 |
0.79 |
0.62 |
0.34 |
0.77 |
0.02 |
0.8 |
0.95 |
0.43 |
0.79 |
0.85 |
chr9 | 10778293 | 10784424 | chr9:10778293-10784424:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.14 |
0.06 |
0.02 |
0.87 |
0.26 |
0.0 |
0.29 |
0.81 |
0.02 |
0.21 |
0.14 |
chr9 | 12333994 | 12340033 | chr9:12333994-12340033:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.09 |
0.78 |
0.5 |
0.13 |
0.73 |
0.73 |
0.73 |
0.82 |
0.07 |
0.64 |
0.74 |
chr9 | 13037883 | 13043909 | chr9:13037883-13043909:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.92 |
0.95 |
0.81 |
0.06 |
0.87 |
0.85 |
0.89 |
0.81 |
0.94 |
0.88 |
0.93 |
chr9 | 13791549 | 13794590 | chr9:13791549-13794590:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | 0.0 |
— | — | 0.14 |
0.74 |
— | — | 0.17 |
0.04 |
chr9 | 14663995 | 14670015 | chr9:14663995-14670015:+:L1PA2:REF | L1PA2 | REF | full-length | ZDHHC21 | 0.77 |
0.94 |
0.97 |
0.83 |
0.11 |
0.97 |
0.97 |
0.97 |
0.93 |
0.96 |
0.98 |
0.98 |
chr9 | 14870656 | 14876831 | chr9:14870656-14876831:-:L1PA3:REF | L1PA3 | REF | full-length | FREM1 | 0.04 |
0.96 |
0.91 |
0.38 |
0.93 |
0.76 |
0.91 |
0.79 |
0.96 |
0.94 |
0.67 |
0.86 |
chr9 | 14949423 | 14955872 | chr9:14949423-14955872:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.16 |
0.92 |
0.84 |
0.02 |
0.87 |
0.55 |
0.22 |
0.6 |
0.89 |
0.87 |
0.44 |
0.1 |
chr9 | 15628037 | 15634187 | chr9:15628037-15634187:+:L1PA3:REF | L1PA3 | REF | full-length | CCDC171 | 0.02 |
0.94 |
0.98 |
— | 0.91 |
0.93 |
0.95 |
0.83 |
0.95 |
0.92 |
0.95 |
0.95 |
chr9 | 15644266 | 15650411 | chr9:15644266-15650411:+:L1PA5:REF | L1PA5 | REF | full-length | CCDC171 | 0.01 |
0.94 |
0.83 |
0.97 |
0.9 |
0.87 |
0.72 |
— | 0.96 |
0.85 |
0.93 |
0.99 |
chr9 | 16223083 | 16229454 | chr9:16223083-16229454:+:L1PA7:REF | L1PA7 | REF | full-length | C9orf92 | — | — | — | — | — | — | — | — | — | — | 0.46 |
— |
chr9 | 17210063 | 17216201 | chr9:17210063-17216201:-:L1PA5:REF | L1PA5 | REF | full-length | CNTLN | 0.01 |
0.03 |
0.84 |
0.89 |
0.91 |
0.93 |
0.63 |
0.92 |
0.95 |
0.87 |
0.95 |
0.59 |
chr9 | 17263044 | 17269181 | chr9:17263044-17269181:-:L1PA4:REF | L1PA4 | REF | full-length | CNTLN | 0.01 |
0.06 |
0.81 |
0.98 |
0.69 |
0.98 |
0.36 |
0.98 |
0.78 |
0.11 |
0.94 |
0.83 |
chr9 | 17539561 | 17545580 | chr9:17539561-17545580:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.68 |
0.92 |
0.92 |
0.91 |
0.83 |
0.8 |
0.84 |
0.94 |
0.89 |
0.89 |
0.82 |
chr9 | 18178012 | 18180251 | chr9:18178012-18180251:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
— | 0.89 |
0.63 |
0.93 |
0.75 |
0.65 |
0.85 |
0.95 |
0.87 |
0.8 |
0.78 |
chr9 | 18304911 | 18311360 | chr9:18304911-18311360:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.28 |
— |
chr9 | 18560890 | 18560892 | chr9:18560890-18560892:-:L1HS:NONREF | L1HS | KNR | — | ADAMTSL1 | — | — | — | — | — | 0.97 |
— | — | — | — | — | — |
chr9 | 18584294 | 18584296 | chr9:18584294-18584296:+:L1HS:NONREF | L1HS | KNR | — | ADAMTSL1 | — | — | 0.93 |
— | — | — | — | — | — | 0.95 |
— | — |
chr9 | 18644386 | 18650544 | chr9:18644386-18650544:-:L1PA3:REF | L1PA3 | REF | full-length | ADAMTSL1 | 0.01 |
0.22 |
0.88 |
0.5 |
0.87 |
0.96 |
0.62 |
0.9 |
0.91 |
0.81 |
0.94 |
0.73 |
chr9 | 18711233 | 18717230 | chr9:18711233-18717230:+:L1PA3:REF | L1PA3 | REF | full-length | ADAMTSL1 | 0.05 |
0.02 |
0.96 |
0.93 |
0.87 |
0.98 |
0.81 |
0.93 |
0.98 |
0.96 |
0.96 |
0.91 |
chr9 | 18839036 | 18845184 | chr9:18839036-18845184:-:L1PA3:REF | L1PA3 | REF | full-length | ADAMTSL1 | 0.0 |
0.93 |
0.94 |
0.49 |
0.84 |
0.87 |
0.55 |
0.96 |
0.95 |
0.87 |
0.78 |
0.68 |
chr9 | 18962366 | 18968212 | chr9:18962366-18968212:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | SAXO1 | — | 0.96 |
0.94 |
0.14 |
0.81 |
0.71 |
0.07 |
0.73 |
0.85 |
0.97 |
0.74 |
0.76 |
chr9 | 19536200 | 19542230 | chr9:19536200-19542230:-:L1PA2:REF | L1PA2 | REF | full-length | SLC24A2 | 0.11 |
0.62 |
0.9 |
0.76 |
0.1 |
0.82 |
0.38 |
0.84 |
0.96 |
0.86 |
0.83 |
0.87 |
chr9 | 19545936 | 19547088 | chr9:19545936-19547088:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | SLC24A2 | — | — | — | — | — | — | — | — | — | — | 0.55 |
— |