Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9 | 70232212 | 70234017 | chr9:70232212-70234017:+:L1P3:REF | L1P3 | REF | 3prime-truncated | SMC5-AS1 | 0.09 |
0.98 |
0.91 |
0.31 |
0.93 |
0.97 |
0.98 |
0.97 |
0.94 |
0.83 |
0.74 |
0.96 |
chr9 | 70240311 | 70246471 | chr9:70240311-70246471:+:L1PA6:REF | L1PA6 | REF | full-length | SMC5-AS1 | 0.12 |
0.95 |
0.93 |
0.14 |
0.85 |
0.82 |
0.95 |
0.86 |
0.98 |
0.88 |
0.94 |
0.96 |
chr9 | 72000000 | 72000629 | chr9:72000000-72000629:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
0.96 |
0.94 |
0.89 |
0.94 |
0.94 |
0.79 |
0.87 |
0.93 |
0.89 |
0.93 |
0.95 |
chr9 | 72072195 | 72076757 | chr9:72072195-72076757:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.48 |
0.39 |
0.83 |
0.6 |
0.21 |
0.14 |
0.35 |
0.48 |
0.42 |
0.31 |
0.66 |
chr9 | 73782741 | 73789187 | chr9:73782741-73789187:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr9 | 74424274 | 74430304 | chr9:74424274-74430304:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.76 |
0.85 |
0.66 |
0.08 |
— | 0.81 |
0.75 |
0.94 |
0.9 |
0.81 |
0.76 |
chr9 | 75340569 | 75346725 | chr9:75340569-75346725:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | 0.81 |
0.63 |
0.34 |
— | — | 0.37 |
0.55 |
0.81 |
chr9 | 75474002 | 75474004 | chr9:75474002-75474004:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.82 |
— | — | — | — | — | — |
chr9 | 75701100 | 75707247 | chr9:75701100-75707247:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.44 |
0.8 |
0.2 |
0.89 |
0.12 |
0.43 |
0.6 |
0.84 |
0.39 |
0.66 |
0.76 |
chr9 | 75762467 | 75763171 | chr9:75762467-75763171:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.43 |
0.68 |
0.24 |
0.84 |
0.67 |
0.36 |
0.71 |
0.9 |
0.36 |
0.64 |
0.87 |
chr9 | 76670038 | 76676075 | chr9:76670038-76676075:+:L1PA2:REF | L1PA2 | REF | full-length | PRUNE2 | — | — | — | 0.67 |
— | — | — | — | — | — | — | — |
chr9 | 77408305 | 77411381 | chr9:77408305-77411381:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | VPS13A | 0.97 |
0.89 |
0.94 |
0.98 |
0.92 |
0.97 |
0.91 |
0.98 |
0.96 |
0.97 |
0.9 |
0.98 |
chr9 | 77687672 | 77688390 | chr9:77687672-77688390:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.3 |
0.06 |
0.85 |
0.7 |
0.84 |
0.9 |
0.66 |
0.86 |
0.95 |
0.84 |
0.91 |
0.91 |
chr9 | 79097851 | 79103879 | chr9:79097851-79103879:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.44 |
0.91 |
0.88 |
0.21 |
0.96 |
0.62 |
0.95 |
0.95 |
0.84 |
0.96 |
0.96 |
chr9 | 79438972 | 79444977 | chr9:79438972-79444977:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.91 |
0.91 |
0.75 |
0.37 |
0.8 |
0.33 |
0.59 |
0.39 |
0.7 |
0.41 |
0.81 |
chr9 | 79500000 | 79500580 | chr9:79500000-79500580:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | 0.81 |
— | — | — | — | — | 0.87 |
— | 0.93 |
0.88 |
0.79 |
chr9 | 80300144 | 80301724 | chr9:80300144-80301724:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | 0.72 |
0.05 |
0.76 |
0.36 |
— | 0.46 |
— | 0.57 |
0.27 |
0.07 |
chr9 | 80344878 | 80345776 | chr9:80344878-80345776:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.72 |
0.55 |
0.24 |
0.75 |
0.47 |
0.42 |
0.68 |
0.72 |
0.59 |
0.44 |
0.59 |
chr9 | 80654116 | 80660135 | chr9:80654116-80660135:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.91 |
— | — | 0.72 |
— | 0.47 |
— | — | — | 0.86 |
0.75 |
chr9 | 80741662 | 80747689 | chr9:80741662-80747689:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.42 |
0.85 |
0.62 |
0.28 |
0.81 |
0.72 |
0.95 |
0.93 |
0.21 |
0.95 |
0.88 |
chr9 | 81217155 | 81223297 | chr9:81217155-81223297:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.73 |
0.92 |
0.46 |
0.92 |
0.79 |
0.66 |
0.93 |
0.98 |
0.88 |
0.91 |
0.62 |
chr9 | 81432296 | 81438437 | chr9:81432296-81438437:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | 0.91 |
— | — | — | — | 0.96 |
— |
chr9 | 82751810 | 82757866 | chr9:82751810-82757866:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.55 |
0.94 |
0.65 |
0.55 |
0.75 |
0.56 |
0.81 |
0.89 |
0.94 |
0.68 |
0.86 |
chr9 | 82769371 | 82775374 | chr9:82769371-82775374:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.53 |
0.93 |
0.29 |
0.76 |
0.7 |
0.75 |
0.81 |
0.95 |
0.14 |
0.74 |
0.73 |
chr9 | 83049539 | 83055571 | chr9:83049539-83055571:-:L1HS:REF | L1HS | REF | full-length | RASEF | 0.04 |
0.97 |
0.99 |
0.91 |
0.25 |
0.93 |
0.89 |
0.94 |
0.92 |
0.99 |
0.9 |
0.91 |
chr9 | 83222905 | 83228949 | chr9:83222905-83228949:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.96 |
0.97 |
0.78 |
0.26 |
0.86 |
0.92 |
0.78 |
0.77 |
0.93 |
0.75 |
— |
chr9 | 85071665 | 85077678 | chr9:85071665-85077678:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.85 |
0.96 |
0.7 |
0.2 |
0.71 |
0.77 |
0.55 |
0.57 |
0.92 |
0.47 |
0.86 |
chr9 | 85717679 | 85723818 | chr9:85717679-85723818:-:L1PA6:REF | L1PA6 | REF | full-length | AGTPBP1 | 0.78 |
0.97 |
0.96 |
0.97 |
0.59 |
0.97 |
0.98 |
0.95 |
0.88 |
0.98 |
0.93 |
0.99 |
chr9 | 86088457 | 86091219 | chr9:86088457-86091219:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | GOLM1 | 0.0 |
0.97 |
0.95 |
0.82 |
0.94 |
0.97 |
0.62 |
0.97 |
0.95 |
0.96 |
0.96 |
0.98 |
chr9 | 86157088 | 86163107 | chr9:86157088-86163107:+:L1PA2:REF | L1PA2 | REF | full-length | LOC101927623 | 0.22 |
0.62 |
0.97 |
0.77 |
0.88 |
0.9 |
0.92 |
0.89 |
0.92 |
0.93 |
0.91 |
0.94 |
chr9 | 86377466 | 86383626 | chr9:86377466-86383626:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.76 |
0.7 |
0.14 |
0.81 |
0.68 |
0.32 |
0.65 |
0.88 |
0.69 |
0.62 |
0.91 |
chr9 | 86606053 | 86612054 | chr9:86606053-86612054:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.2 |
0.94 |
0.98 |
0.97 |
0.64 |
0.96 |
0.87 |
0.95 |
0.7 |
0.82 |
0.96 |
0.92 |
chr9 | 87041882 | 87047900 | chr9:87041882-87047900:+:L1PA3:REF | L1PA3 | REF | full-length | LOC440173 | 0.01 |
0.86 |
0.01 |
0.96 |
0.03 |
0.96 |
0.91 |
0.95 |
— | 0.0 |
0.84 |
— |
chr9 | 87276756 | 87276758 | chr9:87276756-87276758:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.92 |
— | — | — | — | — | — | 0.88 |
— | 0.84 |
chr9 | 87902138 | 87908249 | chr9:87902138-87908249:+:L1PA4:REF | L1PA4 | REF | full-length | LOC497256 | 0.07 |
0.94 |
0.86 |
0.68 |
0.87 |
0.83 |
0.57 |
0.87 |
0.92 |
0.79 |
0.87 |
0.85 |
chr9 | 88597321 | 88603641 | chr9:88597321-88603641:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | 0.98 |
0.69 |
— | 0.74 |
0.74 |
0.48 |
0.81 |
— | 0.59 |
0.96 |
0.98 |
chr9 | 90149604 | 90155634 | chr9:90149604-90155634:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.95 |
0.92 |
0.58 |
0.17 |
0.71 |
0.74 |
0.79 |
0.93 |
0.86 |
0.8 |
0.84 |
chr9 | 91225551 | 91231568 | chr9:91225551-91231568:-:L1PA3:REF | L1PA3 | REF | full-length | AUH | — | 0.95 |
1.0 |
0.99 |
— | 0.95 |
0.99 |
0.99 |
— | 0.96 |
0.98 |
0.99 |
chr9 | 91477875 | 91480116 | chr9:91477875-91480116:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.02 |
0.84 |
0.92 |
0.23 |
0.91 |
0.76 |
0.12 |
0.85 |
0.95 |
0.77 |
0.84 |
0.92 |
chr9 | 91654471 | 91654473 | chr9:91654471-91654473:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.78 |
— |
chr9 | 92082239 | 92088398 | chr9:92082239-92088398:-:L1PA3:REF | L1PA3 | REF | full-length | SPTLC1 | 0.97 |
0.99 |
0.99 |
0.98 |
0.96 |
0.98 |
0.99 |
0.99 |
0.96 |
0.97 |
0.98 |
0.99 |
chr9 | 92214408 | 92220428 | chr9:92214408-92220428:+:L1PA3:REF | L1PA3 | REF | full-length | IARS | 0.97 |
0.97 |
0.98 |
0.99 |
0.77 |
0.94 |
0.98 |
0.97 |
0.82 |
0.97 |
0.93 |
0.97 |
chr9 | 92900099 | 92906066 | chr9:92900099-92906066:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | — | 0.55 |
0.79 |
0.61 |
0.59 |
— | 0.49 |
0.66 |
— | 0.59 |
0.69 |
0.95 |
chr9 | 94020341 | 94026495 | chr9:94020341-94026495:-:L1PA3:REF | L1PA3 | REF | full-length | PTPDC1 | 0.57 |
0.94 |
0.89 |
0.82 |
0.8 |
0.74 |
0.9 |
0.74 |
0.82 |
0.84 |
0.9 |
0.9 |
chr9 | 94048052 | 94051360 | chr9:94048052-94051360:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | PTPDC1 | 0.47 |
0.98 |
0.9 |
0.94 |
0.87 |
0.96 |
0.98 |
0.93 |
0.93 |
0.92 |
0.95 |
0.98 |
chr9 | 94089082 | 94095103 | chr9:94089082-94095103:-:L1PA2:REF | L1PA2 | REF | full-length | PTPDC1 | 0.85 |
0.29 |
0.97 |
0.94 |
0.38 |
0.97 |
0.98 |
0.98 |
0.91 |
0.06 |
0.96 |
0.98 |
chr9 | 94113535 | 94119565 | chr9:94113535-94119565:-:L1HS:REF | L1HS | REF | full-length | PTPDC1 | 0.94 |
0.97 |
0.97 |
0.91 |
0.21 |
0.98 |
0.98 |
0.96 |
0.95 |
0.96 |
0.97 |
0.99 |
chr9 | 95697585 | 95703604 | chr9:95697585-95703604:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.93 |
0.94 |
0.72 |
0.47 |
0.84 |
0.88 |
0.9 |
0.89 |
0.89 |
0.92 |
0.88 |
chr9 | 96797005 | 96803185 | chr9:96797005-96803185:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.86 |
0.98 |
0.97 |
0.97 |
0.94 |
0.92 |
0.99 |
0.93 |
0.98 |
0.95 |
0.98 |
0.98 |
chr9 | 97205143 | 97211302 | chr9:97205143-97211302:+:L1PA3:REF | L1PA3 | REF | full-length | ANKRD18CP | — | 0.76 |
0.87 |
0.78 |
0.88 |
0.65 |
0.65 |
0.72 |
0.93 |
0.88 |
0.67 |
0.89 |