Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10 | 5222679 | 5228851 | chr10:5222679-5228851:+:L1PA3:REF | L1PA3 | REF | full-length | AKR1C4 | — | 0.81 |
0.93 |
— | 0.89 |
0.83 |
0.94 |
0.73 |
0.93 |
0.63 |
0.79 |
0.92 |
chr10 | 5234497 | 5240880 | chr10:5234497-5240880:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | 0.86 |
— | — | — | 0.74 |
0.77 |
chr10 | 5245354 | 5251383 | chr10:5245354-5251383:+:L1HS:REF | L1HS | REF | full-length | — | 0.62 |
0.98 |
0.89 |
0.87 |
0.43 |
0.8 |
0.98 |
0.83 |
0.94 |
0.72 |
0.88 |
0.96 |
chr10 | 6369617 | 6375667 | chr10:6369617-6375667:-:L1HS:REF | L1HS | REF | full-length | — | 0.1 |
0.96 |
— | 0.81 |
— | — | — | — | 0.93 |
— | — | — |
chr10 | 6804143 | 6810301 | chr10:6804143-6810301:-:L1PA3:REF | L1PA3 | REF | full-length | LINC00707 | 0.0 |
0.57 |
0.95 |
0.95 |
0.92 |
0.82 |
0.6 |
0.93 |
0.93 |
0.86 |
0.8 |
0.53 |
chr10 | 9519878 | 9526029 | chr10:9519878-9526029:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.71 |
0.8 |
0.54 |
0.93 |
0.66 |
0.54 |
0.74 |
0.95 |
0.79 |
0.91 |
0.98 |
chr10 | 10069374 | 10075458 | chr10:10069374-10075458:-:L1PA4:REF | L1PA4 | REF | full-length | LINC02670 | 0.01 |
0.42 |
0.9 |
0.44 |
0.96 |
0.75 |
0.69 |
0.85 |
0.97 |
0.84 |
0.96 |
0.97 |
chr10 | 10650857 | 10656884 | chr10:10650857-10656884:+:L1PA2:REF | L1PA2 | REF | full-length | CELF2 | 0.02 |
0.71 |
0.94 |
0.81 |
0.61 |
0.9 |
0.83 |
0.94 |
0.94 |
0.91 |
0.96 |
0.98 |
chr10 | 11731436 | 11737465 | chr10:11731436-11737465:-:L1PA2:REF | L1PA2 | REF | full-length | ECHDC3 | 0.46 |
0.85 |
0.83 |
0.37 |
0.18 |
0.71 |
0.49 |
0.75 |
0.39 |
0.8 |
0.88 |
0.84 |
chr10 | 15915731 | 15921753 | chr10:15915731-15921753:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.17 |
0.91 |
0.94 |
0.87 |
0.1 |
0.88 |
0.86 |
0.9 |
0.97 |
0.91 |
0.92 |
0.89 |
chr10 | 17717877 | 17722977 | chr10:17717877-17722977:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | STAM | 0.96 |
0.91 |
0.98 |
0.98 |
0.95 |
0.93 |
0.98 |
0.98 |
0.97 |
0.98 |
0.99 |
0.94 |
chr10 | 18030651 | 18036675 | chr10:18030651-18036675:-:L1PA2:REF | L1PA2 | REF | full-length | SLC39A12 | 0.01 |
0.84 |
0.77 |
0.86 |
0.49 |
0.8 |
0.61 |
0.79 |
0.88 |
0.75 |
0.73 |
0.81 |
chr10 | 18627418 | 18633448 | chr10:18627418-18633448:+:L1PA3:REF | L1PA3 | REF | full-length | NSUN6 | 0.32 |
0.03 |
0.1 |
0.01 |
0.29 |
0.06 |
0.4 |
0.14 |
0.09 |
0.02 |
0.19 |
0.98 |
chr10 | 19088601 | 19094618 | chr10:19088601-19094618:-:L1HS:REF | L1HS | REF | full-length | MALRD1 | 0.01 |
0.97 |
0.88 |
0.75 |
0.4 |
0.81 |
0.77 |
0.93 |
0.94 |
0.92 |
0.87 |
0.83 |
chr10 | 19581231 | 19587252 | chr10:19581231-19587252:-:L1PA3:REF | L1PA3 | REF | full-length | MALRD1 | 0.02 |
0.02 |
0.87 |
0.25 |
0.91 |
0.83 |
0.76 |
0.93 |
0.95 |
0.9 |
0.91 |
0.84 |
chr10 | 20291416 | 20297572 | chr10:20291416-20297572:-:L1PA4:REF | L1PA4 | REF | full-length | PLXDC2 | 0.0 |
0.58 |
0.47 |
0.39 |
0.84 |
0.62 |
0.3 |
0.74 |
0.93 |
0.45 |
0.67 |
0.27 |
chr10 | 20459681 | 20465829 | chr10:20459681-20465829:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.87 |
0.76 |
0.37 |
0.91 |
0.73 |
0.33 |
0.85 |
0.95 |
0.8 |
0.78 |
0.68 |
chr10 | 20525714 | 20531846 | chr10:20525714-20531846:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.07 |
0.59 |
0.24 |
0.93 |
0.63 |
0.45 |
0.77 |
0.95 |
0.52 |
0.71 |
0.77 |
chr10 | 20555404 | 20561597 | chr10:20555404-20561597:+:L1PA4:REF | L1PA4 | REF | full-length | MIR4675 | 0.0 |
0.88 |
0.78 |
— | 0.82 |
0.73 |
0.46 |
0.62 |
— | 0.72 |
0.66 |
0.76 |
chr10 | 20751667 | 20757692 | chr10:20751667-20757692:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.93 |
0.87 |
0.66 |
0.11 |
0.86 |
0.78 |
0.86 |
0.93 |
0.88 |
0.86 |
0.92 |
chr10 | 20937453 | 20943602 | chr10:20937453-20943602:+:L1PA4:REF | L1PA4 | REF | full-length | NEBL | — | — | — | — | — | — | — | — | — | — | 0.47 |
— |
chr10 | 22060724 | 22066859 | chr10:22060724-22066859:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.79 |
0.92 |
0.42 |
0.82 |
0.86 |
0.51 |
0.33 |
0.4 |
0.93 |
0.56 |
0.62 |
0.77 |
chr10 | 22074347 | 22080756 | chr10:22074347-22080756:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.23 |
0.96 |
0.9 |
0.32 |
0.82 |
0.27 |
0.15 |
0.3 |
0.88 |
0.88 |
0.26 |
0.96 |
chr10 | 22089277 | 22095453 | chr10:22089277-22095453:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | 0.56 |
— | — | — | 0.8 |
— |
chr10 | 22123889 | 22129939 | chr10:22123889-22129939:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | 0.94 |
— | 0.2 |
0.85 |
— | 0.87 |
— | 0.84 |
0.86 |
— |
chr10 | 22403137 | 22409152 | chr10:22403137-22409152:-:L1PA3:REF | L1PA3 | REF | full-length | SPAG6 | 0.95 |
0.94 |
0.98 |
0.94 |
0.79 |
0.88 |
0.7 |
0.9 |
0.98 |
0.96 |
0.92 |
0.99 |
chr10 | 22880664 | 22882940 | chr10:22880664-22882940:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.21 |
0.73 |
0.84 |
0.06 |
0.78 |
0.34 |
0.05 |
0.27 |
0.87 |
0.78 |
0.55 |
0.73 |
chr10 | 23508105 | 23512073 | chr10:23508105-23512073:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.5 |
0.96 |
0.94 |
0.97 |
0.85 |
0.83 |
0.87 |
0.79 |
0.94 |
0.79 |
0.84 |
0.95 |
chr10 | 23589779 | 23595933 | chr10:23589779-23595933:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.71 |
0.79 |
0.5 |
0.9 |
0.69 |
0.5 |
0.79 |
0.93 |
0.54 |
0.73 |
0.73 |
chr10 | 23666416 | 23672562 | chr10:23666416-23672562:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.9 |
0.83 |
0.78 |
0.8 |
0.8 |
0.67 |
0.78 |
0.93 |
0.77 |
0.7 |
0.74 |
chr10 | 23851013 | 23857162 | chr10:23851013-23857162:-:L1PA3:REF | L1PA3 | REF | full-length | KIAA1217 | 0.0 |
0.75 |
0.66 |
0.29 |
0.74 |
0.64 |
0.37 |
0.56 |
0.8 |
0.57 |
0.5 |
0.47 |
chr10 | 24094324 | 24095382 | chr10:24094324-24095382:-:L1P1:REF | L1P1 | REF | 3prime-truncated | KIAA1217 | 0.03 |
0.94 |
0.96 |
0.43 |
0.86 |
0.72 |
0.88 |
0.7 |
0.96 |
0.88 |
0.64 |
0.75 |
chr10 | 25247314 | 25253340 | chr10:25247314-25253340:-:L1PA2:REF | L1PA2 | REF | full-length | GPR158 | 0.03 |
0.95 |
0.95 |
0.79 |
0.12 |
0.85 |
0.86 |
0.84 |
0.95 |
0.91 |
0.87 |
0.96 |
chr10 | 25418756 | 25418758 | chr10:25418756-25418758:-:L1HS:NONREF | L1HS | KNR | — | GPR158 | 0.01 |
0.94 |
0.8 |
0.79 |
0.12 |
0.66 |
0.26 |
0.73 |
0.68 |
0.53 |
0.7 |
0.9 |
chr10 | 25515369 | 25521391 | chr10:25515369-25521391:-:L1PA2:REF | L1PA2 | REF | full-length | GPR158 | 0.86 |
0.85 |
0.94 |
0.7 |
0.38 |
0.73 |
0.73 |
0.78 |
0.97 |
0.92 |
0.65 |
0.79 |
chr10 | 27299253 | 27305370 | chr10:27299253-27305370:+:L1PA4:REF | L1PA4 | REF | full-length | ARMC4P1 | 0.03 |
0.83 |
0.94 |
0.8 |
0.83 |
0.67 |
0.59 |
0.66 |
0.79 |
0.91 |
0.73 |
0.84 |
chr10 | 27418271 | 27424390 | chr10:27418271-27424390:+:L1PA4:REF | L1PA4 | REF | full-length | PTCHD3 | 0.02 |
0.96 |
0.93 |
0.68 |
0.87 |
0.77 |
0.8 |
0.79 |
0.95 |
0.86 |
0.66 |
0.96 |
chr10 | 27899015 | 27903737 | chr10:27899015-27903737:+:L1P3:REF | L1P3 | REF | 3prime-truncated | ARMC4 | — | — | — | — | — | — | — | — | — | — | 0.17 |
— |
chr10 | 29334661 | 29335640 | chr10:29334661-29335640:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.91 |
0.71 |
— | — | 0.64 |
— | 0.56 |
— | 0.74 |
0.72 |
0.69 |
chr10 | 30947409 | 30948037 | chr10:30947409-30948037:-:L1P1:REF | L1P1 | REF | 3prime-truncated | ZNF438 | 0.01 |
0.96 |
0.96 |
0.94 |
0.8 |
0.96 |
0.87 |
0.94 |
0.96 |
0.97 |
0.98 |
0.99 |
chr10 | 31443412 | 31449437 | chr10:31443412-31449437:-:L1PA2:REF | L1PA2 | REF | full-length | ZEB1 | 0.69 |
0.97 |
0.98 |
0.98 |
0.19 |
0.99 |
0.98 |
0.99 |
0.97 |
0.98 |
0.98 |
0.99 |
chr10 | 31469210 | 31475223 | chr10:31469210-31475223:+:L1PA3:REF | L1PA3 | REF | full-length | ZEB1 | 0.93 |
0.87 |
0.98 |
0.99 |
0.95 |
0.98 |
0.98 |
0.99 |
0.99 |
0.97 |
0.99 |
0.98 |
chr10 | 32501066 | 32502512 | chr10:32501066-32502512:-:L1P2:REF | L1P2 | REF | 3prime-truncated | CCDC7 | 0.11 |
0.96 |
0.48 |
0.96 |
0.92 |
0.92 |
0.36 |
0.77 |
0.87 |
0.74 |
0.82 |
0.97 |
chr10 | 32558677 | 32564814 | chr10:32558677-32564814:+:L1PA3:REF | L1PA3 | REF | full-length | CCDC7 | 0.56 |
0.27 |
0.94 |
0.89 |
0.69 |
0.96 |
0.9 |
0.92 |
0.98 |
0.91 |
0.97 |
0.98 |
chr10 | 32699054 | 32705157 | chr10:32699054-32705157:-:L1PA4:REF | L1PA4 | REF | full-length | CCDC7 | 0.01 |
0.84 |
0.73 |
0.7 |
0.85 |
0.84 |
0.66 |
0.81 |
0.87 |
0.68 |
0.85 |
0.84 |
chr10 | 32714106 | 32720586 | chr10:32714106-32720586:+:L1PA7:REF | L1PA7 | REF | full-length | CCDC7 | 0.01 |
0.92 |
0.64 |
0.7 |
0.89 |
0.78 |
0.26 |
0.79 |
0.79 |
0.44 |
0.69 |
0.94 |
chr10 | 32754652 | 32760755 | chr10:32754652-32760755:+:L1PA4:REF | L1PA4 | REF | full-length | CCDC7 | 0.01 |
— | 0.34 |
0.22 |
— | 0.72 |
0.03 |
0.56 |
0.88 |
0.06 |
0.58 |
— |
chr10 | 32912176 | 32918355 | chr10:32912176-32918355:+:L1PA5:REF | L1PA5 | REF | full-length | ITGB1 | — | — | — | — | — | — | — | — | — | — | 0.4 |
— |
chr10 | 33510845 | 33516876 | chr10:33510845-33516876:-:L1HS:REF | L1HS | REF | full-length | — | 0.07 |
0.98 |
0.97 |
0.81 |
0.35 |
0.95 |
0.91 |
0.96 |
0.87 |
0.96 |
0.95 |
0.96 |
chr10 | 33690908 | 33696739 | chr10:33690908-33696739:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
1.0 |
0.92 |
0.18 |
0.91 |
0.77 |
0.77 |
0.94 |
1.0 |
0.83 |
0.8 |
0.93 |