Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10 | 35473782 | 35479771 | chr10:35473782-35479771:+:L1PA3:REF | L1PA3 | REF | full-length | CCNY | 0.97 |
0.98 |
0.98 |
0.98 |
0.93 |
0.97 |
0.98 |
0.94 |
0.98 |
0.96 |
0.99 |
0.98 |
chr10 | 35858668 | 35864695 | chr10:35858668-35864695:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.38 |
0.79 |
0.91 |
0.22 |
0.83 |
0.34 |
0.82 |
0.56 |
0.26 |
0.85 |
0.82 |
chr10 | 36912319 | 36914176 | chr10:36912319-36914176:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.68 |
0.29 |
0.0 |
0.91 |
0.46 |
0.08 |
0.46 |
0.74 |
0.24 |
0.45 |
0.21 |
chr10 | 37038753 | 37044909 | chr10:37038753-37044909:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.63 |
0.12 |
0.32 |
0.87 |
0.58 |
0.45 |
0.48 |
0.83 |
0.09 |
0.63 |
0.7 |
chr10 | 37044908 | 37050652 | chr10:37044908-37050652:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
0.9 |
0.31 |
0.14 |
0.82 |
0.5 |
0.06 |
0.5 |
0.75 |
0.17 |
0.54 |
0.45 |
chr10 | 37137240 | 37139196 | chr10:37137240-37139196:+:L1P1:REF | L1P1 | REF | 3prime-truncated | ANKRD30A | 0.03 |
0.71 |
0.53 |
0.32 |
0.85 |
0.58 |
0.31 |
0.63 |
0.79 |
0.35 |
0.66 |
0.64 |
chr10 | 37537981 | 37544103 | chr10:37537981-37544103:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.57 |
0.69 |
0.09 |
0.72 |
0.53 |
0.1 |
0.64 |
0.54 |
0.21 |
0.5 |
0.39 |
chr10 | 37765638 | 37771787 | chr10:37765638-37771787:+:L1PA4:REF | L1PA4 | REF | full-length | ZNF248 | 0.0 |
0.99 |
0.56 |
0.05 |
0.82 |
0.48 |
0.96 |
0.56 |
0.73 |
0.31 |
0.44 |
0.93 |
chr10 | 37896970 | 37902988 | chr10:37896970-37902988:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.87 |
0.75 |
0.74 |
0.92 |
0.8 |
0.78 |
0.83 |
0.93 |
0.53 |
0.81 |
0.89 |
chr10 | 37995443 | 38000000 | chr10:37995443-38000000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.56 |
0.95 |
0.92 |
0.7 |
0.8 |
0.85 |
0.84 |
0.85 |
0.93 |
0.93 |
0.9 |
0.96 |
chr10 | 38190899 | 38190901 | chr10:38190899-38190901:+:L1HS:NONREF | L1HS | UNKNR | — | LOC100129055 | — | — | — | — | — | — | — | — | — | 0.03 |
— | — |
chr10 | 42140003 | 42146144 | chr10:42140003-42146144:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.44 |
0.38 |
0.39 |
0.68 |
0.5 |
0.25 |
0.61 |
0.73 |
0.06 |
0.45 |
0.48 |
chr10 | 42526228 | 42532221 | chr10:42526228-42532221:-:L1PA3:REF | L1PA3 | REF | full-length | ZNF37BP | 0.96 |
0.95 |
0.99 |
— | 0.97 |
0.99 |
0.89 |
— | 0.96 |
0.93 |
0.97 |
0.98 |
chr10 | 42665128 | 42671301 | chr10:42665128-42671301:+:L1PA4:REF | L1PA4 | REF | full-length | LINC01518 | 0.68 |
0.48 |
0.51 |
0.08 |
0.84 |
0.54 |
0.01 |
0.62 |
0.86 |
0.33 |
0.65 |
0.87 |
chr10 | 43716710 | 43722842 | chr10:43716710-43722842:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.93 |
0.81 |
0.29 |
0.84 |
0.82 |
0.66 |
0.81 |
0.86 |
0.57 |
0.82 |
0.65 |
chr10 | 43989778 | 43993191 | chr10:43989778-43993191:-:L1P1:REF | L1P1 | REF | 3prime-truncated | LINC00841 | 0.02 |
0.87 |
0.85 |
0.37 |
0.86 |
0.85 |
0.75 |
0.86 |
0.9 |
0.75 |
0.81 |
0.67 |
chr10 | 44106731 | 44112897 | chr10:44106731-44112897:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
— | 0.84 |
0.23 |
0.58 |
0.89 |
0.57 |
— | 0.89 |
0.46 |
0.8 |
0.46 |
chr10 | 44137213 | 44138862 | chr10:44137213-44138862:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.83 |
0.75 |
0.03 |
0.84 |
0.75 |
0.39 |
0.71 |
0.88 |
0.46 |
0.47 |
0.12 |
chr10 | 44268315 | 44274469 | chr10:44268315-44274469:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.96 |
0.92 |
0.43 |
0.86 |
0.91 |
0.9 |
0.9 |
0.95 |
0.71 |
0.84 |
0.71 |
chr10 | 45009173 | 45015196 | chr10:45009173-45015196:-:L1PA3:REF | L1PA3 | REF | full-length | ZNF22 | 0.25 |
0.86 |
0.87 |
0.53 |
0.92 |
0.85 |
0.71 |
0.9 |
0.96 |
0.89 |
0.9 |
0.83 |
chr10 | 45250612 | 45251044 | chr10:45250612-45251044:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.49 |
— | 0.91 |
0.23 |
0.91 |
0.74 |
— | 0.8 |
— | 0.8 |
0.64 |
0.81 |
chr10 | 45362159 | 45368173 | chr10:45362159-45368173:+:L1PA6:REF | L1PA6 | REF | full-length | ALOX5 | 0.23 |
0.01 |
0.64 |
0.65 |
0.38 |
0.65 |
0.52 |
0.54 |
0.57 |
0.16 |
0.71 |
0.84 |
chr10 | 50262408 | 50264886 | chr10:50262408-50264886:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.36 |
0.75 |
0.75 |
0.16 |
0.8 |
0.68 |
0.01 |
0.76 |
0.8 |
0.47 |
0.73 |
0.81 |
chr10 | 50782474 | 50788587 | chr10:50782474-50788587:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.64 |
0.83 |
0.18 |
0.68 |
0.74 |
0.36 |
0.75 |
0.9 |
0.79 |
0.83 |
0.96 |
chr10 | 51163398 | 51165747 | chr10:51163398-51165747:+:L1P1:REF | L1P1 | REF | 3prime-truncated | PRKG1 | 0.03 |
0.93 |
0.97 |
0.72 |
0.9 |
0.96 |
0.9 |
0.94 |
0.87 |
0.96 |
0.97 |
0.95 |
chr10 | 51941454 | 51947615 | chr10:51941454-51947615:-:L1PA3:REF | L1PA3 | REF | full-length | PRKG1 | 0.01 |
0.69 |
0.93 |
0.48 |
0.92 |
0.96 |
0.74 |
0.91 |
0.91 |
0.94 |
0.98 |
0.9 |
chr10 | 52233328 | 52239334 | chr10:52233328-52239334:+:L1PA2:REF | L1PA2 | REF | full-length | PRKG1 | 0.01 |
0.0 |
— | 0.35 |
0.15 |
0.29 |
0.59 |
0.22 |
0.2 |
— | 0.06 |
0.01 |
chr10 | 52360195 | 52366339 | chr10:52360195-52366339:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.86 |
0.85 |
0.86 |
0.81 |
0.88 |
0.7 |
0.88 |
0.87 |
0.66 |
0.91 |
0.77 |
chr10 | 52730355 | 52736527 | chr10:52730355-52736527:-:L1PA3:REF | L1PA3 | REF | full-length | LOC105378305 | 0.02 |
0.09 |
0.93 |
0.77 |
0.9 |
0.91 |
0.98 |
0.92 |
0.97 |
0.91 |
0.87 |
0.93 |
chr10 | 52846400 | 52846769 | chr10:52846400-52846769:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.18 |
— |
chr10 | 53494006 | 53500000 | chr10:53494006-53500000:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.8 |
0.88 |
0.69 |
0.91 |
0.68 |
0.53 |
0.73 |
0.96 |
0.91 |
0.68 |
0.96 |
chr10 | 55601875 | 55607910 | chr10:55601875-55607910:+:L1PA3:REF | L1PA3 | REF | full-length | PCDH15 | 0.01 |
0.02 |
0.01 |
0.75 |
0.07 |
0.03 |
0.11 |
0.03 |
0.03 |
0.01 |
0.07 |
0.98 |
chr10 | 55683076 | 55689092 | chr10:55683076-55689092:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.77 |
0.82 |
0.81 |
0.91 |
0.68 |
0.73 |
0.69 |
0.84 |
0.93 |
0.81 |
0.91 |
chr10 | 55899641 | 55905708 | chr10:55899641-55905708:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.77 |
0.84 |
0.72 |
0.09 |
0.64 |
0.69 |
0.78 |
0.21 |
0.06 |
0.78 |
0.96 |
chr10 | 56442079 | 56448236 | chr10:56442079-56448236:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.82 |
0.24 |
0.23 |
0.7 |
0.45 |
0.35 |
0.49 |
0.76 |
0.19 |
0.48 |
0.91 |
chr10 | 56683821 | 56689958 | chr10:56683821-56689958:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.59 |
0.27 |
0.13 |
0.75 |
0.39 |
0.37 |
0.34 |
0.79 |
0.15 |
0.41 |
0.7 |
chr10 | 58675839 | 58681636 | chr10:58675839-58681636:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | BICC1 | 0.0 |
0.4 |
0.96 |
0.33 |
0.94 |
0.97 |
0.91 |
0.97 |
0.96 |
0.25 |
0.96 |
0.9 |
chr10 | 59019528 | 59019530 | chr10:59019528-59019530:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.93 |
— |
chr10 | 59037844 | 59043990 | chr10:59037844-59043990:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.24 |
0.74 |
0.22 |
0.89 |
0.67 |
0.97 |
0.75 |
0.93 |
0.23 |
0.73 |
0.96 |
chr10 | 59207135 | 59207609 | chr10:59207135-59207609:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | PHYHIPL | — | — | 0.46 |
— | 0.81 |
— | 1.0 |
— | — | 0.07 |
0.33 |
0.75 |
chr10 | 59470127 | 59475776 | chr10:59470127-59475776:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.01 |
0.5 |
0.71 |
0.07 |
0.67 |
0.56 |
0.25 |
0.77 |
— | 0.16 |
0.64 |
— |
chr10 | 60692960 | 60698897 | chr10:60692960-60698897:+:L1PA3:REF | L1PA3 | REF | full-length | ANK3 | 0.02 |
0.36 |
0.97 |
0.9 |
0.88 |
0.66 |
0.37 |
0.78 |
0.94 |
— | 0.79 |
0.96 |
chr10 | 61002940 | 61009034 | chr10:61002940-61009034:-:L1PA6:REF | L1PA6 | REF | full-length | RHOBTB1 | 0.29 |
0.94 |
0.92 |
0.78 |
0.88 |
0.83 |
0.97 |
0.86 |
0.91 |
0.83 |
0.92 |
0.92 |
chr10 | 62602750 | 62608755 | chr10:62602750-62608755:-:L1PA2:REF | L1PA2 | REF | full-length | ZNF365 | 0.02 |
0.86 |
0.17 |
0.85 |
0.1 |
0.88 |
0.5 |
0.92 |
0.55 |
0.01 |
0.96 |
0.95 |
chr10 | 62672214 | 62678359 | chr10:62672214-62678359:-:L1PA3:REF | L1PA3 | REF | full-length | ZNF365 | 0.07 |
0.72 |
0.76 |
0.63 |
0.59 |
0.75 |
0.7 |
0.72 |
0.78 |
0.58 |
0.74 |
0.8 |
chr10 | 62782003 | 62785652 | chr10:62782003-62785652:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.38 |
— | — | — | 0.81 |
0.89 |
chr10 | 63944638 | 63950772 | chr10:63944638-63950772:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.91 |
0.88 |
0.68 |
0.91 |
0.75 |
0.5 |
0.71 |
0.96 |
0.66 |
0.75 |
0.98 |
chr10 | 64015342 | 64021547 | chr10:64015342-64021547:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.7 |
0.71 |
0.64 |
0.86 |
0.75 |
0.76 |
0.75 |
0.93 |
0.53 |
0.7 |
0.98 |
chr10 | 64924285 | 64930261 | chr10:64924285-64930261:+:L1PA3:REF | L1PA3 | REF | full-length | LINC02671 | 0.03 |
0.74 |
0.14 |
0.44 |
0.43 |
0.4 |
0.49 |
0.55 |
0.46 |
0.13 |
0.7 |
0.98 |
chr10 | 66436526 | 66439146 | chr10:66436526-66439146:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | CTNNA3 | 0.03 |
— | 0.15 |
0.03 |
0.9 |
0.4 |
0.21 |
0.42 |
— | 0.26 |
0.36 |
0.98 |