Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9 | 97341376 | 97342313 | chr9:97341376-97342313:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | SUGT1P4-STRA6LP-CCDC180 | — | — | — | — | — | — | — | — | — | — | 0.79 |
— |
chr9 | 97580993 | 97587031 | chr9:97580993-97587031:-:L1PA2:REF | L1PA2 | REF | full-length | TMOD1 | 0.97 |
0.95 |
0.97 |
0.99 |
0.54 |
0.93 |
0.92 |
0.96 |
0.96 |
0.93 |
0.97 |
0.97 |
chr9 | 98508277 | 98514399 | chr9:98508277-98514399:+:L1PA3:REF | L1PA3 | REF | full-length | GABBR2 | — | — | 0.81 |
— | — | — | 0.37 |
— | — | 0.61 |
0.72 |
0.76 |
chr9 | 99498741 | 99500000 | chr9:99498741-99500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.14 |
0.97 |
0.93 |
0.67 |
0.09 |
0.88 |
0.88 |
0.83 |
0.6 |
0.93 |
0.69 |
0.97 |
chr9 | 100527228 | 100533251 | chr9:100527228-100533251:+:L1PA2:REF | L1PA2 | REF | full-length | MSANTD3-TMEFF1 | 0.08 |
0.85 |
0.94 |
0.83 |
0.41 |
0.89 |
0.77 |
0.97 |
— | 0.94 |
0.92 |
0.92 |
chr9 | 100617095 | 100620060 | chr9:100617095-100620060:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.68 |
— |
chr9 | 100636584 | 100638426 | chr9:100636584-100638426:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
0.43 |
0.68 |
0.04 |
0.73 |
0.36 |
0.33 |
0.42 |
0.87 |
0.42 |
0.42 |
0.46 |
chr9 | 100690713 | 100696743 | chr9:100690713-100696743:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.28 |
0.88 |
0.61 |
0.75 |
0.67 |
0.54 |
0.62 |
0.86 |
0.72 |
0.76 |
0.84 |
chr9 | 100745539 | 100749580 | chr9:100745539-100749580:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.18 |
0.24 |
0.14 |
0.85 |
0.46 |
0.02 |
0.54 |
0.84 |
0.14 |
0.5 |
0.22 |
chr9 | 101102144 | 101108174 | chr9:101102144-101108174:-:L1PA2:REF | L1PA2 | REF | full-length | PLPPR1 | 0.01 |
0.87 |
0.86 |
0.7 |
0.14 |
— | 0.96 |
0.83 |
0.92 |
0.75 |
0.88 |
0.91 |
chr9 | 101290800 | 101296956 | chr9:101290800-101296956:+:L1PA3:REF | L1PA3 | REF | full-length | PLPPR1 | 0.22 |
0.71 |
0.91 |
0.46 |
0.87 |
0.74 |
0.96 |
0.75 |
0.91 |
0.83 |
0.74 |
0.85 |
chr9 | 102064229 | 102067315 | chr9:102064229-102067315:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.03 |
0.18 |
0.4 |
0.17 |
— | 0.45 |
0.3 |
0.46 |
— | 0.11 |
0.42 |
0.62 |
chr9 | 102147744 | 102153764 | chr9:102147744-102153764:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.57 |
0.47 |
0.59 |
0.59 |
0.64 |
0.45 |
0.66 |
0.79 |
0.21 |
0.66 |
0.93 |
chr9 | 102217909 | 102223924 | chr9:102217909-102223924:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.28 |
0.77 |
0.41 |
0.11 |
0.51 |
0.71 |
0.63 |
0.83 |
0.01 |
0.67 |
0.93 |
chr9 | 102337202 | 102343354 | chr9:102337202-102343354:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.28 |
0.55 |
0.24 |
0.86 |
0.59 |
0.75 |
0.7 |
0.89 |
0.3 |
0.56 |
0.76 |
chr9 | 103237485 | 103241471 | chr9:103237485-103241471:+:L1HS:REF | L1HS | REF | 3prime-truncated | LINC01492 | 0.02 |
0.8 |
0.82 |
0.81 |
0.09 |
0.78 |
0.36 |
0.84 |
0.88 |
0.45 |
0.75 |
0.88 |
chr9 | 103606282 | 103612435 | chr9:103606282-103612435:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.19 |
0.34 |
0.48 |
0.75 |
0.58 |
0.23 |
0.68 |
0.77 |
0.23 |
0.49 |
0.84 |
chr9 | 104703167 | 104708881 | chr9:104703167-104708881:+:L1P3:REF | L1P3 | REF | 3prime-truncated | OR13D1 | — | — | — | — | — | — | — | — | — | — | 0.24 |
— |
chr9 | 105489506 | 105495647 | chr9:105489506-105495647:-:L1PA3:REF | L1PA3 | REF | full-length | FSD1L | 0.76 |
0.55 |
0.84 |
0.99 |
0.94 |
0.9 |
0.97 |
0.98 |
0.98 |
0.85 |
0.98 |
0.98 |
chr9 | 105515391 | 105519740 | chr9:105515391-105519740:+:L1P2:REF | L1P2 | REF | 3prime-truncated | FSD1L | 0.84 |
0.95 |
0.94 |
0.95 |
0.89 |
1.0 |
0.95 |
0.98 |
0.96 |
0.93 |
0.98 |
0.99 |
chr9 | 105563175 | 105569299 | chr9:105563175-105569299:+:L1PA5:REF | L1PA5 | REF | full-length | FKTN | 0.97 |
0.98 |
0.98 |
0.98 |
0.93 |
0.99 |
0.98 |
0.99 |
0.98 |
0.94 |
0.98 |
0.99 |
chr9 | 105576167 | 105582192 | chr9:105576167-105582192:-:L1PA2:REF | L1PA2 | REF | full-length | FKTN | 0.89 |
0.97 |
0.97 |
0.91 |
0.13 |
0.95 |
0.97 |
0.96 |
0.9 |
0.96 |
0.98 |
0.98 |
chr9 | 105785075 | 105791210 | chr9:105785075-105791210:-:L1PA5:REF | L1PA5 | REF | full-length | TMEM38B | 0.88 |
0.85 |
0.92 |
0.85 |
0.87 |
0.71 |
0.81 |
0.69 |
0.94 |
0.89 |
0.82 |
0.91 |
chr9 | 106181588 | 106187641 | chr9:106181588-106187641:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.96 |
0.79 |
0.72 |
0.77 |
0.82 |
0.78 |
0.8 |
0.97 |
0.67 |
0.75 |
0.97 |
chr9 | 106809184 | 106815350 | chr9:106809184-106815350:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.68 |
0.52 |
0.02 |
0.94 |
0.58 |
0.01 |
0.53 |
0.94 |
0.1 |
0.74 |
0.77 |
chr9 | 108026592 | 108032734 | chr9:108026592-108032734:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.35 |
0.97 |
0.93 |
0.93 |
0.85 |
0.95 |
0.67 |
0.94 |
0.94 |
0.93 |
0.96 |
0.96 |
chr9 | 108501091 | 108507115 | chr9:108501091-108507115:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.87 |
0.86 |
0.79 |
0.83 |
0.9 |
0.82 |
0.95 |
0.97 |
0.8 |
0.97 |
0.96 |
chr9 | 108802688 | 108802690 | chr9:108802688-108802690:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.97 |
— | — | — | 0.9 |
— | 0.91 |
— | — | — | — |
chr9 | 109835393 | 109841527 | chr9:109835393-109841527:+:L1PA5:REF | L1PA5 | REF | full-length | PALM2 | 0.02 |
0.83 |
0.96 |
0.44 |
0.89 |
0.98 |
0.74 |
0.98 |
0.96 |
0.84 |
0.93 |
0.9 |
chr9 | 110000010 | 110006173 | chr9:110000010-110006173:-:L1PA4:REF | L1PA4 | REF | full-length | PALM2-AKAP2 | 0.01 |
0.4 |
0.87 |
0.11 |
0.61 |
0.95 |
0.52 |
0.96 |
0.94 |
0.77 |
0.94 |
0.87 |
chr9 | 110229429 | 110235911 | chr9:110229429-110235911:-:L1PA4:REF | L1PA4 | REF | full-length | TXN | 0.2 |
0.96 |
0.9 |
0.87 |
0.9 |
0.96 |
0.91 |
0.98 |
0.94 |
0.96 |
0.98 |
0.98 |
chr9 | 110417102 | 110423126 | chr9:110417102-110423126:+:L1HS:REF | L1HS | REF | full-length | SVEP1 | 0.2 |
0.91 |
0.97 |
0.85 |
0.09 |
0.98 |
0.93 |
0.88 |
0.94 |
0.95 |
0.97 |
0.98 |
chr9 | 110791097 | 110797129 | chr9:110791097-110797129:+:L1HS:REF | L1HS | REF | full-length | MUSK | 0.03 |
0.95 |
0.98 |
0.82 |
0.36 |
0.98 |
0.81 |
0.98 |
0.96 |
0.96 |
0.99 |
0.98 |
chr9 | 112798107 | 112804159 | chr9:112798107-112804159:-:L1HS:REF | L1HS | REF | full-length | SNX30 | 0.89 |
0.55 |
0.98 |
0.97 |
0.14 |
0.96 |
0.97 |
0.98 |
0.91 |
0.52 |
0.97 |
0.98 |
chr9 | 113437560 | 113443590 | chr9:113437560-113443590:-:L1PA7:REF | L1PA7 | REF | full-length | RGS3 | 0.68 |
0.83 |
0.95 |
0.86 |
0.39 |
0.95 |
0.9 |
0.96 |
— | 0.95 |
0.96 |
0.96 |
chr9 | 115958906 | 115962960 | chr9:115958906-115962960:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.41 |
0.93 |
0.95 |
0.92 |
0.9 |
0.89 |
0.95 |
0.97 |
0.24 |
0.97 |
0.87 |
chr9 | 117066017 | 117072036 | chr9:117066017-117072036:-:L1PA2:REF | L1PA2 | REF | full-length | ASTN2 | 0.04 |
0.91 |
0.92 |
0.79 |
0.13 |
0.76 |
0.77 |
0.79 |
0.68 |
0.62 |
0.73 |
0.71 |
chr9 | 118504546 | 118510677 | chr9:118504546-118510677:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.08 |
0.46 |
0.8 |
0.85 |
0.41 |
0.04 |
0.47 |
0.82 |
0.2 |
0.44 |
0.27 |
chr9 | 119169116 | 119175132 | chr9:119169116-119175132:+:L1PA2:REF | L1PA2 | REF | full-length | BRINP1 | 0.03 |
0.57 |
0.84 |
0.69 |
0.22 |
0.54 |
0.52 |
0.52 |
0.56 |
0.6 |
0.42 |
0.82 |
chr9 | 119621304 | 119627350 | chr9:119621304-119627350:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.75 |
0.83 |
0.69 |
0.21 |
0.8 |
0.73 |
0.78 |
0.9 |
0.67 |
0.76 |
0.9 |
chr9 | 120055235 | 120061264 | chr9:120055235-120061264:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.83 |
0.91 |
0.71 |
0.28 |
0.82 |
0.87 |
0.79 |
0.88 |
0.78 |
0.84 |
0.85 |
chr9 | 122408633 | 122414773 | chr9:122408633-122414773:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.04 |
0.21 |
0.75 |
0.6 |
0.92 |
0.87 |
— | 0.88 |
0.83 |
0.37 |
0.92 |
0.89 |
chr9 | 122590144 | 122596170 | chr9:122590144-122596170:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | 0.82 |
— | — | — | — | 0.95 |
chr9 | 123903370 | 123909365 | chr9:123903370-123909365:+:L1PA2:REF | L1PA2 | REF | full-length | DENND1A | 0.95 |
0.98 |
0.98 |
0.98 |
0.84 |
0.98 |
0.98 |
0.95 |
0.96 |
0.98 |
0.96 |
0.97 |
chr9 | 125010048 | 125016177 | chr9:125010048-125016177:+:L1PA3:REF | L1PA3 | REF | full-length | SCAI | 0.97 |
0.98 |
0.94 |
0.95 |
0.95 |
0.98 |
0.95 |
0.99 |
0.87 |
0.92 |
0.98 |
0.99 |
chr9 | 131342266 | 131345525 | chr9:131342266-131345525:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.7 |
0.95 |
0.95 |
0.96 |
0.96 |
0.94 |
0.77 |
0.96 |
0.98 |
0.92 |
0.97 |
0.97 |
chr10 | 746011 | 746471 | chr10:746011-746471:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.08 |
0.83 |
0.94 |
0.82 |
0.94 |
0.91 |
0.77 |
0.92 |
0.95 |
0.86 |
0.8 |
0.97 |
chr10 | 1302016 | 1308092 | chr10:1302016-1308092:+:L1PA2:REF | L1PA2 | REF | full-length | ADARB2 | 0.02 |
0.87 |
0.92 |
0.96 |
0.78 |
0.77 |
0.67 |
0.79 |
0.93 |
0.67 |
0.75 |
0.78 |
chr10 | 5109685 | 5110414 | chr10:5109685-5110414:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | AKR1C3 | 0.69 |
0.02 |
0.87 |
— | 0.89 |
0.57 |
1.0 |
— | — | 0.47 |
0.8 |
0.95 |
chr10 | 5174970 | 5181139 | chr10:5174970-5181139:-:L1PA3:REF | L1PA3 | REF | full-length | AKR1C8P | 0.56 |
0.94 |
0.81 |
0.94 |
0.86 |
0.57 |
0.96 |
0.68 |
0.94 |
0.45 |
0.7 |
0.87 |