Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 48409323 | 48410566 | chr12:48409323-48410566:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr12 | 48474255 | 48478717 | chr12:48474255-48478717:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | ANP32D | 0.01 |
0.27 |
0.51 |
0.32 |
0.73 |
0.26 |
0.17 |
0.22 |
0.5 |
0.5 |
0.26 |
0.79 |
chr12 | 48552504 | 48554329 | chr12:48552504-48554329:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.04 |
0.0 |
0.8 |
0.02 |
0.82 |
0.34 |
0.0 |
0.25 |
0.88 |
0.09 |
0.48 |
0.21 |
chr12 | 51562631 | 51568657 | chr12:51562631-51568657:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.27 |
0.97 |
0.75 |
0.06 |
0.92 |
0.91 |
0.91 |
0.87 |
0.5 |
0.9 |
0.14 |
chr12 | 51568648 | 51571798 | chr12:51568648-51571798:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.28 |
0.97 |
— | 0.71 |
0.95 |
0.98 |
0.83 |
0.95 |
0.97 |
0.95 |
0.93 |
0.99 |
chr12 | 54788573 | 54794627 | chr12:54788573-54794627:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.9 |
0.84 |
0.6 |
0.33 |
0.75 |
0.8 |
0.83 |
0.88 |
0.78 |
0.68 |
0.86 |
chr12 | 54882885 | 54889034 | chr12:54882885-54889034:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.45 |
0.81 |
0.46 |
0.57 |
0.66 |
0.51 |
0.67 |
0.88 |
0.37 |
0.62 |
0.62 |
chr12 | 55081365 | 55087407 | chr12:55081365-55087407:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.71 |
0.82 |
0.51 |
0.48 |
0.67 |
0.57 |
0.71 |
0.95 |
0.51 |
0.69 |
0.72 |
chr12 | 55096256 | 55102283 | chr12:55096256-55102283:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.84 |
0.83 |
0.66 |
0.14 |
0.77 |
0.9 |
0.81 |
0.89 |
0.66 |
0.77 |
0.9 |
chr12 | 55161585 | 55167616 | chr12:55161585-55167616:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.65 |
0.84 |
0.69 |
0.83 |
0.71 |
0.84 |
0.73 |
— | 0.7 |
0.73 |
0.82 |
chr12 | 55210434 | 55212283 | chr12:55210434-55212283:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | OR10A7 | — | 0.49 |
0.43 |
0.41 |
0.91 |
0.67 |
0.8 |
0.62 |
0.96 |
— | 0.67 |
0.78 |
chr12 | 55344249 | 55350274 | chr12:55344249-55350274:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.51 |
0.78 |
0.62 |
0.77 |
0.81 |
0.81 |
0.91 |
— | 0.66 |
0.83 |
0.84 |
chr12 | 55354942 | 55361385 | chr12:55354942-55361385:+:L1PA7:REF | L1PA7 | REF | full-length | OR6C75 | — | — | — | — | — | — | — | — | — | — | 0.22 |
— |
chr12 | 55484008 | 55490018 | chr12:55484008-55490018:+:L1PA2:REF | L1PA2 | REF | full-length | OR6C68 | 0.03 |
0.64 |
0.68 |
0.4 |
0.31 |
0.58 |
0.87 |
0.65 |
0.78 |
0.49 |
0.68 |
0.79 |
chr12 | 55504697 | 55510839 | chr12:55504697-55510839:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.28 |
0.64 |
0.05 |
0.91 |
0.63 |
0.79 |
0.7 |
0.93 |
0.22 |
0.62 |
0.42 |
chr12 | 55560427 | 55566502 | chr12:55560427-55566502:+:L1PA3:REF | L1PA3 | REF | full-length | OR2AP1 | 0.01 |
0.66 |
0.61 |
0.58 |
0.9 |
0.71 |
0.71 |
0.79 |
0.87 |
0.4 |
0.7 |
0.85 |
chr12 | 55589937 | 55595956 | chr12:55589937-55595956:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.09 |
0.74 |
0.87 |
0.43 |
0.63 |
0.69 |
0.49 |
0.77 |
0.93 |
0.68 |
0.7 |
0.66 |
chr12 | 55598092 | 55604209 | chr12:55598092-55604209:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.54 |
0.26 |
0.04 |
0.87 |
0.47 |
0.26 |
0.43 |
0.86 |
0.02 |
0.49 |
0.49 |
chr12 | 56965991 | 56967070 | chr12:56965991-56967070:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | RDH16 | — | — | 0.88 |
— | 0.88 |
0.84 |
0.72 |
0.79 |
— | 0.76 |
0.93 |
0.91 |
chr12 | 57646479 | 57652498 | chr12:57646479-57652498:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.38 |
0.62 |
0.88 |
0.79 |
0.66 |
0.52 |
0.74 |
0.74 |
0.34 |
0.63 |
0.83 |
chr12 | 58051823 | 58053653 | chr12:58051823-58053653:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
0.96 |
0.55 |
0.32 |
0.82 |
0.59 |
0.59 |
0.73 |
0.87 |
0.25 |
0.74 |
0.89 |
chr12 | 58053653 | 58059697 | chr12:58053653-58059697:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.96 |
0.63 |
0.46 |
0.66 |
0.65 |
0.56 |
0.81 |
0.79 |
0.39 |
0.85 |
0.87 |
chr12 | 58109257 | 58115306 | chr12:58109257-58115306:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.86 |
0.74 |
0.66 |
0.87 |
0.8 |
0.58 |
0.76 |
0.93 |
0.37 |
0.77 |
0.96 |
chr12 | 58226938 | 58233087 | chr12:58226938-58233087:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.94 |
0.68 |
0.39 |
0.88 |
0.69 |
0.29 |
0.72 |
0.93 |
0.08 |
0.75 |
0.95 |
chr12 | 58471406 | 58477554 | chr12:58471406-58477554:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.62 |
0.97 |
0.93 |
0.95 |
0.98 |
0.8 |
0.97 |
0.99 |
0.6 |
0.98 |
0.98 |
chr12 | 58708188 | 58710506 | chr12:58708188-58710506:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LINC02388 | 0.01 |
0.88 |
0.53 |
0.13 |
0.85 |
0.88 |
0.39 |
0.87 |
0.91 |
0.24 |
0.84 |
0.96 |
chr12 | 59225285 | 59228476 | chr12:59225285-59228476:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.1 |
0.7 |
0.6 |
0.4 |
0.71 |
0.68 |
0.52 |
0.86 |
1.0 |
0.38 |
0.83 |
0.99 |
chr12 | 59751112 | 59757266 | chr12:59751112-59757266:+:L1PA3:REF | L1PA3 | REF | full-length | SLC16A7 | 0.05 |
0.97 |
0.89 |
0.9 |
0.91 |
0.97 |
0.84 |
0.96 |
0.92 |
0.67 |
0.95 |
0.94 |
chr12 | 60234374 | 60240761 | chr12:60234374-60240761:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.14 |
— | 0.46 |
— | — | — | 0.16 |
— | — | 0.03 |
0.91 |
0.95 |
chr12 | 61076393 | 61076652 | chr12:61076393-61076652:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.04 |
0.64 |
0.7 |
0.67 |
— | 0.61 |
0.44 |
0.58 |
0.34 |
0.7 |
0.69 |
0.72 |
chr12 | 61293783 | 61299916 | chr12:61293783-61299916:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.82 |
0.68 |
0.42 |
0.93 |
0.75 |
0.34 |
0.71 |
0.98 |
0.3 |
0.84 |
0.98 |
chr12 | 61414978 | 61421115 | chr12:61414978-61421115:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.96 |
0.66 |
0.48 |
0.9 |
0.67 |
0.7 |
0.74 |
0.91 |
0.35 |
0.78 |
0.94 |
chr12 | 61922306 | 61926790 | chr12:61922306-61926790:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | TAFA2 | 0.0 |
0.54 |
0.39 |
0.15 |
0.46 |
0.4 |
0.19 |
0.53 |
— | 0.16 |
0.49 |
— |
chr12 | 61941440 | 61947489 | chr12:61941440-61947489:+:L1PA2:REF | L1PA2 | REF | full-length | TAFA2 | 0.01 |
0.9 |
0.77 |
0.61 |
0.11 |
0.72 |
0.68 |
0.83 |
0.96 |
0.56 |
0.7 |
0.98 |
chr12 | 62819802 | 62825895 | chr12:62819802-62825895:+:L1PA6:REF | L1PA6 | REF | full-length | PPM1H | — | — | — | — | 0.67 |
— | — | — | — | — | 0.81 |
— |
chr12 | 63165490 | 63168401 | chr12:63165490-63168401:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.23 |
— | 0.23 |
0.3 |
0.36 |
0.17 |
0.6 |
— | 0.19 |
0.4 |
— |
chr12 | 63336890 | 63343011 | chr12:63336890-63343011:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.74 |
0.89 |
0.12 |
0.81 |
0.49 |
0.16 |
0.5 |
0.9 |
0.81 |
0.49 |
0.98 |
chr12 | 63434166 | 63436476 | chr12:63434166-63436476:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.02 |
0.87 |
0.87 |
0.32 |
0.9 |
0.55 |
0.2 |
0.61 |
0.9 |
0.85 |
0.57 |
0.96 |
chr12 | 63628081 | 63634219 | chr12:63628081-63634219:+:L1PA4:REF | L1PA4 | REF | full-length | DPY19L2 | 0.01 |
0.89 |
0.95 |
0.67 |
0.83 |
0.94 |
0.18 |
0.93 |
— | 0.85 |
0.93 |
0.96 |
chr12 | 64195587 | 64201638 | chr12:64195587-64201638:+:L1PA2:REF | L1PA2 | REF | full-length | C12orf66 | 0.92 |
0.98 |
0.97 |
0.98 |
0.09 |
0.97 |
0.99 |
0.98 |
0.91 |
0.94 |
0.99 |
0.98 |
chr12 | 64287349 | 64293377 | chr12:64287349-64293377:-:L1PA2:REF | L1PA2 | REF | full-length | C12orf56 | 0.0 |
0.7 |
— | — | 0.03 |
— | 0.9 |
— | — | 0.72 |
— | — |
chr12 | 65555418 | 65555740 | chr12:65555418-65555740:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | LOC100507065 | — | — | — | — | 0.98 |
— | 0.96 |
0.95 |
— | 0.99 |
0.98 |
0.97 |
chr12 | 66521519 | 66527684 | chr12:66521519-66527684:+:L1PA4:REF | L1PA4 | REF | full-length | GRIP1 | 0.04 |
0.88 |
0.85 |
0.44 |
0.79 |
0.75 |
0.39 |
0.71 |
0.9 |
0.84 |
0.75 |
0.68 |
chr12 | 66578267 | 66584409 | chr12:66578267-66584409:+:L1PA3:REF | L1PA3 | REF | full-length | GRIP1 | 0.07 |
0.53 |
0.95 |
0.39 |
0.85 |
0.86 |
0.78 |
0.79 |
0.97 |
0.93 |
0.85 |
0.79 |
chr12 | 67843805 | 67849821 | chr12:67843805-67849821:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.64 |
0.9 |
0.63 |
0.93 |
0.92 |
0.78 |
0.89 |
0.98 |
0.76 |
0.92 |
0.93 |
chr12 | 67900208 | 67906224 | chr12:67900208-67906224:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.15 |
0.81 |
0.88 |
0.6 |
0.53 |
0.91 |
0.6 |
0.89 |
0.88 |
0.87 |
0.91 |
0.84 |
chr12 | 69773410 | 69779441 | chr12:69773410-69779441:-:L1HS:REF | L1HS | REF | full-length | RAB3IP | 0.45 |
0.63 |
0.93 |
0.9 |
0.02 |
0.85 |
0.98 |
0.91 |
0.85 |
0.92 |
0.9 |
0.98 |
chr12 | 70013065 | 70019067 | chr12:70013065-70019067:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
— | 0.96 |
0.63 |
0.14 |
0.8 |
0.17 |
0.75 |
0.7 |
— | 0.52 |
0.91 |
chr12 | 70660206 | 70660208 | chr12:70660206-70660208:+:L1HS:NONREF | L1HS | KNR | — | PTPRR | — | — | — | — | — | — | — | — | — | — | 0.89 |
— |
chr12 | 70765020 | 70771163 | chr12:70765020-70771163:+:L1PA3:REF | L1PA3 | REF | full-length | PTPRR | 0.73 |
0.83 |
0.84 |
0.97 |
0.9 |
0.72 |
0.43 |
0.79 |
0.94 |
0.84 |
0.68 |
0.97 |