Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 11108364 | 11114661 | chr12:11108364-11114661:+:L1PA7:REF | L1PA7 | REF | full-length | PRH1-PRR4 | — | — | — | — | 0.8 |
— | — | — | — | — | — | — |
chr12 | 11290236 | 11296361 | chr12:11290236-11296361:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | 0.49 |
0.32 |
0.83 |
0.56 |
0.21 |
0.53 |
0.67 |
0.11 |
0.51 |
0.38 |
chr12 | 11297656 | 11303685 | chr12:11297656-11303685:+:L1PA2:REF | L1PA2 | REF | full-length | PRB4 | 0.15 |
0.65 |
0.67 |
0.84 |
0.03 |
0.57 |
0.42 |
0.54 |
0.39 |
0.62 |
0.61 |
0.51 |
chr12 | 11334413 | 11340550 | chr12:11334413-11340550:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.88 |
0.52 |
0.02 |
0.83 |
0.36 |
0.28 |
0.24 |
0.87 |
0.31 |
0.41 |
0.35 |
chr12 | 11377197 | 11383318 | chr12:11377197-11383318:+:L1PA4:REF | L1PA4 | REF | full-length | PRB1 | — | 0.59 |
0.56 |
0.06 |
0.92 |
0.53 |
0.35 |
0.64 |
0.89 |
0.04 |
0.63 |
0.07 |
chr12 | 11416212 | 11420885 | chr12:11416212-11420885:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | LOC440084 | 0.0 |
0.89 |
0.77 |
0.08 |
0.94 |
0.75 |
0.25 |
0.7 |
0.96 |
0.63 |
0.79 |
0.77 |
chr12 | 13391606 | 13397632 | chr12:13391606-13397632:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.95 |
0.73 |
0.87 |
0.37 |
— | 0.84 |
0.71 |
0.94 |
0.59 |
0.79 |
— |
chr12 | 14861686 | 14867484 | chr12:14861686-14867484:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
0.61 |
0.52 |
0.32 |
0.71 |
0.53 |
0.15 |
0.52 |
0.95 |
0.25 |
0.82 |
0.94 |
chr12 | 16377145 | 16383292 | chr12:16377145-16383292:-:L1PA4:REF | L1PA4 | REF | full-length | MGST1 | 0.04 |
0.37 |
0.72 |
0.41 |
0.48 |
0.79 |
0.9 |
0.94 |
0.92 |
0.63 |
0.96 |
0.97 |
chr12 | 16998314 | 17000000 | chr12:16998314-17000000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | SKP1P2 | 0.01 |
0.45 |
0.62 |
0.51 |
0.84 |
0.71 |
0.8 |
0.72 |
0.91 |
0.47 |
0.77 |
0.92 |
chr12 | 17699378 | 17705544 | chr12:17699378-17705544:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.51 |
0.66 |
0.5 |
0.88 |
0.62 |
0.71 |
0.68 |
0.94 |
0.42 |
0.62 |
0.98 |
chr12 | 17768360 | 17774389 | chr12:17768360-17774389:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.79 |
0.77 |
0.66 |
0.88 |
0.76 |
0.69 |
0.87 |
0.96 |
0.66 |
0.83 |
0.97 |
chr12 | 17855568 | 17861565 | chr12:17855568-17861565:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.81 |
0.67 |
0.74 |
0.7 |
0.75 |
0.58 |
0.79 |
0.94 |
0.5 |
0.81 |
0.98 |
chr12 | 18023799 | 18029914 | chr12:18023799-18029914:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.11 |
— | 0.76 |
0.69 |
0.73 |
0.73 |
0.56 |
0.67 |
— | 0.61 |
0.7 |
0.72 |
chr12 | 18760652 | 18767006 | chr12:18760652-18767006:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.86 |
— |
chr12 | 18785211 | 18791371 | chr12:18785211-18791371:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.77 |
0.86 |
0.83 |
0.73 |
0.9 |
0.81 |
0.72 |
0.88 |
0.93 |
0.8 |
0.94 |
0.98 |
chr12 | 19728689 | 19734844 | chr12:19728689-19734844:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.75 |
0.89 |
0.96 |
0.84 |
0.9 |
0.72 |
0.91 |
0.96 |
0.76 |
0.95 |
0.99 |
chr12 | 20667835 | 20673859 | chr12:20667835-20673859:+:L1PA3:REF | L1PA3 | REF | full-length | PDE3A | 0.02 |
0.7 |
0.58 |
0.94 |
0.74 |
0.71 |
0.59 |
0.77 |
0.89 |
0.58 |
0.8 |
0.81 |
chr12 | 21209060 | 21215087 | chr12:21209060-21215087:-:L1PA2:REF | L1PA2 | REF | full-length | SLCO1B1 | 0.12 |
0.83 |
0.73 |
0.8 |
0.03 |
0.77 |
0.71 |
0.82 |
0.79 |
0.8 |
0.83 |
0.98 |
chr12 | 21395009 | 21401039 | chr12:21395009-21401039:+:L1PA2:REF | L1PA2 | REF | full-length | SLCO1A2 | — | 0.83 |
0.88 |
— | 0.02 |
— | — | — | — | 0.85 |
0.79 |
0.97 |
chr12 | 21622800 | 21627711 | chr12:21622800-21627711:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LDHB | 0.77 |
0.54 |
0.96 |
0.85 |
0.93 |
0.87 |
0.11 |
0.9 |
0.95 |
0.93 |
0.73 |
0.98 |
chr12 | 22146187 | 22147432 | chr12:22146187-22147432:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.03 |
0.94 |
0.72 |
0.07 |
0.87 |
0.52 |
0.63 |
0.7 |
0.98 |
0.73 |
0.68 |
0.94 |
chr12 | 22400101 | 22406177 | chr12:22400101-22406177:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.88 |
0.23 |
0.1 |
0.83 |
0.38 |
0.12 |
0.58 |
0.94 |
0.05 |
0.47 |
0.93 |
chr12 | 23070636 | 23076652 | chr12:23070636-23076652:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.48 |
0.89 |
0.54 |
0.75 |
0.78 |
0.81 |
0.78 |
— | 0.84 |
0.88 |
0.85 |
chr12 | 23821799 | 23825530 | chr12:23821799-23825530:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | SOX5 | 0.85 |
0.93 |
0.91 |
0.2 |
0.89 |
0.58 |
0.98 |
0.94 |
0.96 |
0.92 |
0.78 |
0.46 |
chr12 | 24623500 | 24625755 | chr12:24623500-24625755:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.48 |
— |
chr12 | 25486954 | 25489653 | chr12:25486954-25489653:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | LMNTD1 | 0.02 |
0.9 |
0.97 |
0.85 |
0.02 |
0.97 |
0.8 |
0.89 |
0.56 |
0.97 |
0.99 |
0.98 |
chr12 | 25536714 | 25542734 | chr12:25536714-25542734:+:L1PA3:REF | L1PA3 | REF | full-length | LMNTD1 | 0.0 |
0.97 |
0.93 |
0.96 |
0.68 |
0.88 |
0.69 |
0.97 |
0.9 |
0.91 |
0.93 |
0.87 |
chr12 | 26669557 | 26675709 | chr12:26669557-26675709:+:L1PA3:REF | L1PA3 | REF | full-length | ITPR2 | 0.76 |
0.97 |
0.96 |
0.98 |
0.87 |
0.96 |
0.98 |
0.97 |
0.97 |
0.95 |
0.97 |
0.98 |
chr12 | 27114232 | 27120439 | chr12:27114232-27120439:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
— | 0.94 |
0.9 |
0.83 |
0.84 |
0.65 |
0.85 |
0.96 |
0.95 |
0.94 |
0.97 |
chr12 | 27404617 | 27410753 | chr12:27404617-27410753:+:L1PA4:REF | L1PA4 | REF | full-length | ARNTL2 | 0.16 |
0.98 |
0.98 |
0.99 |
0.92 |
0.98 |
0.98 |
0.99 |
0.99 |
0.97 |
0.98 |
0.98 |
chr12 | 28073477 | 28073480 | chr12:28073477-28073480:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.81 |
0.82 |
0.72 |
0.12 |
— | 0.63 |
0.81 |
0.81 |
0.77 |
0.82 |
0.83 |
chr12 | 28760230 | 28761118 | chr12:28760230-28761118:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.11 |
0.53 |
0.93 |
0.89 |
0.63 |
0.89 |
0.68 |
0.94 |
0.97 |
0.86 |
0.94 |
0.97 |
chr12 | 29322812 | 29323063 | chr12:29322812-29323063:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | FAR2 | 0.97 |
0.94 |
0.94 |
0.98 |
0.91 |
0.94 |
0.98 |
0.99 |
0.9 |
0.91 |
0.97 |
0.97 |
chr12 | 29406310 | 29412472 | chr12:29406310-29412472:-:L1PA3:REF | L1PA3 | REF | full-length | OVCH1-AS1 | 0.19 |
0.79 |
0.84 |
0.87 |
0.82 |
0.79 |
0.75 |
0.79 |
0.8 |
0.75 |
0.86 |
0.85 |
chr12 | 29809726 | 29815750 | chr12:29809726-29815750:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.6 |
0.9 |
0.3 |
0.9 |
0.86 |
0.83 |
0.86 |
0.91 |
0.92 |
0.95 |
0.88 |
chr12 | 29909925 | 29916045 | chr12:29909925-29916045:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.66 |
0.52 |
0.6 |
0.93 |
0.48 |
0.03 |
0.64 |
0.93 |
0.3 |
0.87 |
0.91 |
chr12 | 30365938 | 30367493 | chr12:30365938-30367493:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | — | 0.5 |
— | 0.82 |
— | 0.0 |
— | — | — | 0.26 |
0.75 |
chr12 | 30588353 | 30594511 | chr12:30588353-30594511:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.13 |
0.07 |
0.96 |
0.79 |
0.98 |
0.83 |
0.7 |
0.85 |
— | 0.72 |
0.97 |
0.97 |
chr12 | 30603853 | 30608559 | chr12:30603853-30608559:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.16 |
0.82 |
0.88 |
0.61 |
0.67 |
0.69 |
0.82 |
0.88 |
0.77 |
0.83 |
0.97 |
0.86 |
chr12 | 31163074 | 31169094 | chr12:31163074-31169094:+:L1PA3:REF | L1PA3 | REF | full-length | OVOS2 | 0.34 |
0.85 |
0.97 |
0.79 |
0.06 |
0.84 |
0.84 |
0.85 |
0.85 |
0.11 |
0.92 |
0.97 |
chr12 | 31550066 | 31556205 | chr12:31550066-31556205:-:L1PA4:REF | L1PA4 | REF | full-length | DENND5B | 0.2 |
0.87 |
0.9 |
0.89 |
0.94 |
0.87 |
0.87 |
0.93 |
0.93 |
0.94 |
0.92 |
0.92 |
chr12 | 31717943 | 31719305 | chr12:31717943-31719305:-:L1P2:REF | L1P2 | REF | 3prime-truncated | AMN1 | 0.2 |
— | — | — | 0.52 |
— | — | — | — | 0.95 |
0.97 |
— |
chr12 | 33102281 | 33108456 | chr12:33102281-33108456:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.74 |
0.49 |
0.25 |
0.89 |
0.42 |
0.52 |
0.6 |
0.91 |
0.06 |
0.45 |
0.52 |
chr12 | 33141767 | 33147912 | chr12:33141767-33147912:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.97 |
0.69 |
0.06 |
0.86 |
0.78 |
0.05 |
0.79 |
0.97 |
0.32 |
0.8 |
0.87 |
chr12 | 33172858 | 33172860 | chr12:33172858-33172860:-:L1HS:NONREF | L1HS | KNR | — | — | 0.14 |
— | — | — | — | — | — | — | — | — | — | — |
chr12 | 33772866 | 33779014 | chr12:33772866-33779014:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.54 |
0.84 |
0.46 |
0.15 |
0.86 |
0.54 |
0.58 |
0.59 |
0.91 |
0.2 |
0.6 |
0.59 |
chr12 | 33864388 | 33864390 | chr12:33864388-33864390:-:L1HS:NONREF | L1HS | KNR | — | — | 0.68 |
0.98 |
0.88 |
— | — | 0.86 |
0.89 |
— | — | 0.61 |
0.79 |
0.88 |
chr12 | 33930454 | 33936566 | chr12:33930454-33936566:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.44 |
0.97 |
0.35 |
0.22 |
0.87 |
0.56 |
0.45 |
0.53 |
0.9 |
0.07 |
0.53 |
0.55 |
chr12 | 34066822 | 34072846 | chr12:34066822-34072846:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.93 |
0.49 |
0.37 |
0.84 |
0.53 |
0.61 |
0.44 |
0.78 |
0.32 |
0.68 |
0.72 |