Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11 | 59015244 | 59021381 | chr11:59015244-59021381:+:L1PA3:REF | L1PA3 | REF | full-length | LOC283194 | 0.01 |
0.61 |
0.78 |
0.05 |
0.85 |
0.53 |
0.41 |
0.55 |
0.9 |
0.04 |
0.55 |
0.73 |
chr11 | 59315471 | 59321591 | chr11:59315471-59321591:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.05 |
0.54 |
0.07 |
0.84 |
— | 0.6 |
0.76 |
1.0 |
0.09 |
0.72 |
— |
chr11 | 59372032 | 59375454 | chr11:59372032-59375454:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | OR5AN1 | 0.0 |
0.14 |
0.05 |
0.03 |
0.81 |
0.21 |
0.08 |
0.24 |
0.72 |
0.0 |
0.26 |
0.5 |
chr11 | 60435417 | 60441441 | chr11:60435417-60441441:+:L1PA2:REF | L1PA2 | REF | full-length | MS4A5 | 0.01 |
0.9 |
0.81 |
0.69 |
0.82 |
0.81 |
0.68 |
0.82 |
0.96 |
0.58 |
0.83 |
0.97 |
chr11 | 60532161 | 60538190 | chr11:60532161-60538190:+:L1PA2:REF | L1PA2 | REF | full-length | MS4A13 | — | 0.86 |
0.77 |
0.57 |
0.77 |
0.71 |
0.78 |
0.71 |
— | 0.59 |
0.75 |
0.92 |
chr11 | 60550393 | 60556514 | chr11:60550393-60556514:+:L1PA6:REF | L1PA6 | REF | full-length | MS4A13 | 0.01 |
0.27 |
0.49 |
0.19 |
0.86 |
0.46 |
— | 0.52 |
0.87 |
0.06 |
0.47 |
0.95 |
chr11 | 63072955 | 63079111 | chr11:63072955-63079111:-:L1PA3:REF | L1PA3 | REF | full-length | SLC22A24 | 0.01 |
0.69 |
0.68 |
0.18 |
0.67 |
0.57 |
0.71 |
0.67 |
0.8 |
0.28 |
0.49 |
0.56 |
chr11 | 63201843 | 63207573 | chr11:63201843-63207573:+:L1P3:REF | L1P3 | REF | 3prime-truncated | SLC22A25 | — | — | 0.67 |
— | — | — | — | — | — | — | 0.07 |
— |
chr11 | 63313000 | 63319125 | chr11:63313000-63319125:+:L1PA4:REF | L1PA4 | REF | full-length | SLC22A10 | 0.08 |
— | 0.68 |
— | 0.61 |
0.6 |
0.74 |
— | — | — | 0.54 |
0.79 |
chr11 | 63344422 | 63350438 | chr11:63344422-63350438:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.58 |
0.69 |
0.18 |
0.87 |
0.6 |
0.51 |
0.62 |
0.9 |
0.08 |
0.67 |
0.39 |
chr11 | 63418731 | 63424919 | chr11:63418731-63424919:+:L1PA4:REF | L1PA4 | REF | full-length | SLC22A9 | 0.0 |
0.75 |
0.86 |
0.42 |
0.74 |
0.62 |
0.59 |
0.56 |
0.56 |
0.45 |
0.69 |
0.57 |
chr11 | 63427791 | 63430440 | chr11:63427791-63430440:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.58 |
0.36 |
0.02 |
0.86 |
0.19 |
0.01 |
0.09 |
0.76 |
0.0 |
0.12 |
0.12 |
chr11 | 63430446 | 63435303 | chr11:63430446-63435303:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | 0.09 |
— | — | — | — | — | — | 0.15 |
0.59 |
0.02 |
chr11 | 63435303 | 63441326 | chr11:63435303-63441326:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.77 |
0.9 |
0.36 |
0.71 |
0.72 |
0.86 |
0.82 |
0.91 |
0.64 |
0.8 |
0.87 |
chr11 | 71511047 | 71517198 | chr11:71511047-71517198:+:L1PA4:REF | L1PA4 | REF | full-length | NADSYN1 | 0.18 |
0.96 |
0.94 |
0.7 |
0.87 |
0.88 |
0.89 |
0.79 |
0.97 |
0.56 |
0.89 |
0.95 |
chr11 | 71723727 | 71729843 | chr11:71723727-71729843:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.75 |
— |
chr11 | 74877463 | 74883532 | chr11:74877463-74883532:-:L1PA2:REF | L1PA2 | REF | full-length | XRRA1 | 0.95 |
0.96 |
0.97 |
0.98 |
0.92 |
0.99 |
0.98 |
0.98 |
0.99 |
0.96 |
0.98 |
0.94 |
chr11 | 74887437 | 74893565 | chr11:74887437-74893565:+:L1PA4:REF | L1PA4 | REF | full-length | XRRA1 | 0.92 |
0.96 |
0.96 |
0.98 |
0.92 |
0.98 |
0.98 |
0.92 |
0.98 |
0.89 |
0.98 |
0.98 |
chr11 | 75748616 | 75754649 | chr11:75748616-75754649:+:L1PA2:REF | L1PA2 | REF | full-length | LOC283214 | 0.65 |
0.05 |
0.98 |
0.75 |
0.33 |
0.94 |
0.94 |
0.96 |
0.9 |
0.84 |
0.96 |
0.97 |
chr11 | 76480616 | 76481026 | chr11:76480616-76481026:+:L1P3:REF | L1P3 | REF | 3prime-truncated | EMSY | — | — | — | — | — | — | — | — | — | — | 0.5 |
— |
chr11 | 76963833 | 76969955 | chr11:76963833-76969955:+:L1PA4:REF | L1PA4 | REF | full-length | ACER3 | 0.95 |
0.86 |
0.86 |
0.97 |
0.81 |
0.94 |
0.87 |
0.87 |
0.92 |
0.86 |
0.88 |
0.88 |
chr11 | 77218393 | 77224331 | chr11:77218393-77224331:-:L1PA6:REF | L1PA6 | REF | full-length | GDPD4 | 0.0 |
— | — | 0.44 |
— | — | — | — | 0.92 |
— | 0.41 |
0.99 |
chr11 | 78677772 | 78683802 | chr11:78677772-78683802:-:L1HS:REF | L1HS | REF | full-length | TENM4 | 0.03 |
0.97 |
0.96 |
0.8 |
0.16 |
0.91 |
0.85 |
0.95 |
0.65 |
0.95 |
0.94 |
0.9 |
chr11 | 79552653 | 79558680 | chr11:79552653-79558680:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.95 |
0.88 |
0.15 |
0.76 |
0.7 |
0.33 |
0.84 |
0.89 |
0.79 |
0.69 |
0.52 |
chr11 | 79586089 | 79591129 | chr11:79586089-79591129:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.91 |
0.7 |
0.07 |
0.89 |
0.59 |
0.04 |
0.55 |
0.79 |
0.33 |
0.59 |
0.33 |
chr11 | 81534298 | 81540421 | chr11:81534298-81540421:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.45 |
0.42 |
0.15 |
0.89 |
0.51 |
0.47 |
0.58 |
0.9 |
0.23 |
0.65 |
0.59 |
chr11 | 82155865 | 82161891 | chr11:82155865-82161891:+:L1HS:REF | L1HS | REF | full-length | MIR4300HG | 0.02 |
0.84 |
0.88 |
0.7 |
0.09 |
0.84 |
0.84 |
0.85 |
0.95 |
— | 0.85 |
0.88 |
chr11 | 82878580 | 82880656 | chr11:82878580-82880656:-:L1P2:REF | L1P2 | REF | 3prime-truncated | PRCP | 0.75 |
0.94 |
0.96 |
0.97 |
0.88 |
0.93 |
0.96 |
0.98 |
0.98 |
0.95 |
0.96 |
0.96 |
chr11 | 83266134 | 83272255 | chr11:83266134-83272255:+:L1PA6:REF | L1PA6 | REF | full-length | CCDC90B | 0.89 |
0.99 |
1.0 |
1.0 |
1.0 |
0.98 |
0.98 |
— | — | 1.0 |
0.98 |
0.97 |
chr11 | 83587648 | 83593656 | chr11:83587648-83593656:+:L1PA2:REF | L1PA2 | REF | full-length | DLG2 | 0.01 |
0.64 |
0.9 |
— | 0.27 |
0.9 |
0.87 |
0.82 |
0.77 |
— | 0.96 |
0.8 |
chr11 | 83883955 | 83890123 | chr11:83883955-83890123:+:L1PA3:REF | L1PA3 | REF | full-length | DLG2 | 0.01 |
0.69 |
0.82 |
0.37 |
0.88 |
0.52 |
0.73 |
0.71 |
0.96 |
0.39 |
0.57 |
0.7 |
chr11 | 83941305 | 83941307 | chr11:83941305-83941307:-:L1HS:NONREF | L1HS | KNR | — | DLG2 | — | — | — | — | 0.89 |
0.83 |
— | — | — | — | 0.86 |
— |
chr11 | 85324758 | 85330821 | chr11:85324758-85330821:+:L1HS:REF | L1HS | REF | full-length | DLG2 | 0.02 |
0.98 |
0.92 |
0.72 |
0.23 |
0.83 |
0.72 |
0.82 |
0.96 |
0.56 |
0.85 |
0.93 |
chr11 | 85395285 | 85398909 | chr11:85395285-85398909:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | DLG2 | — | — | — | — | — | — | — | — | — | — | 0.04 |
— |
chr11 | 85414862 | 85421408 | chr11:85414862-85421408:-:L1PA7:REF | L1PA7 | REF | full-length | DLG2 | 0.01 |
0.98 |
0.63 |
0.26 |
0.94 |
0.67 |
0.16 |
0.77 |
0.96 |
0.39 |
0.69 |
0.89 |
chr11 | 85425651 | 85429354 | chr11:85425651-85429354:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | DLG2 | 0.01 |
0.9 |
0.84 |
0.22 |
0.92 |
0.6 |
0.54 |
0.7 |
0.9 |
0.23 |
0.62 |
0.86 |
chr11 | 85495930 | 85500000 | chr11:85495930-85500000:+:L1P2:REF | L1P2 | REF | 3prime-truncated | DLG2 | — | — | — | — | — | — | — | — | — | — | 0.24 |
— |
chr11 | 85542991 | 85549441 | chr11:85542991-85549441:-:L1PA7:REF | L1PA7 | REF | full-length | DLG2 | 0.01 |
0.96 |
0.79 |
0.35 |
0.9 |
0.65 |
0.45 |
0.77 |
0.97 |
0.33 |
0.73 |
0.89 |
chr11 | 86525882 | 86531985 | chr11:86525882-86531985:+:L1PA4:REF | L1PA4 | REF | full-length | ME3 | — | 1.0 |
0.99 |
— | 0.92 |
— | 0.84 |
— | — | 0.9 |
0.98 |
0.97 |
chr11 | 86540838 | 86546956 | chr11:86540838-86546956:+:L1PA7:REF | L1PA7 | REF | full-length | ME3 | 0.0 |
0.91 |
0.88 |
0.94 |
0.94 |
1.0 |
0.01 |
0.97 |
0.97 |
0.86 |
0.8 |
0.93 |
chr11 | 86597959 | 86604108 | chr11:86597959-86604108:+:L1PA3:REF | L1PA3 | REF | full-length | ME3 | 0.09 |
0.72 |
0.94 |
0.96 |
0.88 |
0.87 |
0.53 |
0.83 |
0.97 |
0.77 |
0.87 |
0.86 |
chr11 | 86644766 | 86647289 | chr11:86644766-86647289:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | ME3 | 0.0 |
1.0 |
0.95 |
— | 0.82 |
1.0 |
0.18 |
0.95 |
— | 0.78 |
0.97 |
0.93 |
chr11 | 86650612 | 86656759 | chr11:86650612-86656759:+:L1PA4:REF | L1PA4 | REF | full-length | ME3 | 0.01 |
0.71 |
0.96 |
0.98 |
0.78 |
0.85 |
0.36 |
0.73 |
0.93 |
0.74 |
0.87 |
0.85 |
chr11 | 86824478 | 86830636 | chr11:86824478-86830636:-:L1PA3:REF | L1PA3 | REF | full-length | PRSS23 | 0.03 |
0.97 |
0.98 |
0.98 |
0.79 |
0.97 |
0.47 |
0.96 |
0.93 |
0.88 |
0.98 |
0.96 |
chr11 | 87047304 | 87053192 | chr11:87047304-87053192:+:L1PA2:REF | L1PA2 | REF | full-length | TMEM135 | 0.95 |
0.97 |
0.99 |
0.97 |
0.32 |
0.98 |
0.98 |
0.97 |
0.95 |
0.97 |
0.98 |
0.98 |
chr11 | 87340031 | 87346061 | chr11:87340031-87346061:-:L1HS:REF | L1HS | REF | full-length | — | 0.66 |
0.97 |
0.98 |
0.87 |
0.4 |
0.94 |
0.94 |
0.94 |
0.95 |
0.95 |
0.96 |
0.98 |
chr11 | 87618151 | 87624199 | chr11:87618151-87624199:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.59 |
— | — | — | — | — | — | — | — | — | 0.64 |
chr11 | 87652558 | 87658716 | chr11:87652558-87658716:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
— | 0.7 |
— | — | 0.87 |
0.42 |
— | — | 0.34 |
0.76 |
0.96 |
chr11 | 87758408 | 87764544 | chr11:87758408-87764544:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.14 |
0.77 |
0.37 |
0.89 |
0.82 |
0.16 |
0.6 |
0.95 |
0.15 |
0.58 |
0.95 |
chr11 | 87797763 | 87801645 | chr11:87797763-87801645:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.03 |
— | 0.4 |
0.07 |
— | 0.63 |
0.29 |
— | — | 0.04 |
0.51 |
0.9 |