Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11 | 35702778 | 35708923 | chr11:35702778-35708923:+:L1PA3:REF | L1PA3 | REF | full-length | TRIM44 | 0.97 |
0.98 |
0.98 |
0.98 |
0.97 |
0.98 |
0.98 |
0.99 |
0.99 |
0.96 |
0.99 |
0.98 |
chr11 | 35754504 | 35760643 | chr11:35754504-35760643:-:L1PA4:REF | L1PA4 | REF | full-length | TRIM44 | 0.95 |
0.97 |
0.97 |
0.97 |
0.83 |
0.97 |
0.98 |
0.97 |
0.93 |
0.95 |
0.95 |
0.98 |
chr11 | 36551606 | 36557636 | chr11:36551606-36557636:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.93 |
0.94 |
0.81 |
0.09 |
0.88 |
0.93 |
0.88 |
0.89 |
0.76 |
0.87 |
0.98 |
chr11 | 37204151 | 37211571 | chr11:37204151-37211571:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.1 |
— |
chr11 | 37240712 | 37246716 | chr11:37240712-37246716:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.97 |
0.77 |
0.68 |
0.66 |
0.81 |
0.62 |
0.85 |
— | 0.49 |
0.73 |
0.99 |
chr11 | 38191740 | 38197885 | chr11:38191740-38197885:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.25 |
0.86 |
0.73 |
0.73 |
0.52 |
0.78 |
0.74 |
0.77 |
0.84 |
0.59 |
0.67 |
0.84 |
chr11 | 38811177 | 38813505 | chr11:38811177-38813505:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.41 |
0.63 |
0.63 |
0.85 |
0.83 |
0.4 |
0.84 |
0.95 |
0.17 |
0.68 |
0.98 |
chr11 | 38821101 | 38822410 | chr11:38821101-38822410:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.97 |
0.48 |
0.27 |
0.87 |
0.73 |
0.12 |
0.82 |
0.95 |
0.07 |
0.51 |
0.99 |
chr11 | 39231775 | 39235554 | chr11:39231775-39235554:+:L1PA8:REF | L1PA8 | REF | 3prime-truncated | — | 0.0 |
1.0 |
0.13 |
0.11 |
0.84 |
0.51 |
0.44 |
0.46 |
0.92 |
0.0 |
0.37 |
0.95 |
chr11 | 39755039 | 39761185 | chr11:39755039-39761185:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | 0.47 |
0.3 |
0.67 |
— | 0.36 |
0.48 |
— | 0.21 |
0.41 |
— |
chr11 | 39846656 | 39852654 | chr11:39846656-39852654:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.93 |
0.86 |
0.72 |
0.77 |
0.8 |
0.89 |
0.81 |
0.97 |
0.69 |
0.85 |
— |
chr11 | 39881060 | 39887029 | chr11:39881060-39887029:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.44 |
0.3 |
0.13 |
0.87 |
0.44 |
0.17 |
0.44 |
0.92 |
0.1 |
0.47 |
0.95 |
chr11 | 39984014 | 39990193 | chr11:39984014-39990193:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
— | 0.46 |
0.12 |
0.89 |
0.3 |
0.16 |
0.38 |
— | 0.03 |
0.46 |
0.78 |
chr11 | 40451801 | 40452101 | chr11:40451801-40452101:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | LRRC4C | 0.01 |
0.32 |
0.41 |
0.18 |
0.86 |
0.46 |
0.25 |
0.42 |
0.86 |
0.02 |
0.48 |
0.85 |
chr11 | 40585472 | 40591501 | chr11:40585472-40591501:-:L1PA2:REF | L1PA2 | REF | full-length | LRRC4C | — | — | 0.46 |
0.3 |
0.46 |
0.56 |
0.5 |
0.56 |
0.9 |
0.17 |
0.65 |
0.92 |
chr11 | 40910564 | 40916694 | chr11:40910564-40916694:+:L1PA4:REF | L1PA4 | REF | full-length | LRRC4C | 0.0 |
0.13 |
0.27 |
0.07 |
0.86 |
0.46 |
0.47 |
0.47 |
0.82 |
0.01 |
0.44 |
0.97 |
chr11 | 41645094 | 41651525 | chr11:41645094-41651525:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | 0.75 |
0.0 |
— | 0.65 |
0.12 |
0.07 |
0.18 |
— | 0.0 |
0.03 |
0.86 |
chr11 | 41728649 | 41729424 | chr11:41728649-41729424:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LINC01499 | 0.0 |
— | 0.62 |
0.47 |
— | 0.57 |
0.61 |
0.54 |
— | 0.41 |
0.54 |
— |
chr11 | 42376823 | 42382954 | chr11:42376823-42382954:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.53 |
0.14 |
0.14 |
0.83 |
0.47 |
0.05 |
0.36 |
0.9 |
0.04 |
0.31 |
0.91 |
chr11 | 42940332 | 42946342 | chr11:42940332-42946342:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.88 |
0.56 |
0.38 |
0.77 |
0.69 |
0.59 |
0.73 |
0.84 |
0.39 |
0.69 |
0.75 |
chr11 | 43095011 | 43101151 | chr11:43095011-43101151:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.24 |
— | 0.8 |
— | 0.19 |
0.38 |
— | 0.05 |
0.42 |
0.1 |
chr11 | 43201230 | 43207380 | chr11:43201230-43207380:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.37 |
0.22 |
0.06 |
0.84 |
0.42 |
0.03 |
0.33 |
0.81 |
0.01 |
0.37 |
0.46 |
chr11 | 43346101 | 43352118 | chr11:43346101-43352118:-:L1PA2:REF | L1PA2 | REF | full-length | API5 | 0.92 |
0.73 |
0.97 |
0.95 |
— | 0.88 |
0.98 |
0.83 |
0.68 |
0.96 |
0.98 |
0.98 |
chr11 | 45011815 | 45017945 | chr11:45011815-45017945:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
— | — | 0.04 |
— | — | 0.1 |
— | — | — | 0.66 |
0.72 |
chr11 | 45122414 | 45128497 | chr11:45122414-45128497:-:L1PA4:REF | L1PA4 | REF | full-length | PRDM11 | 0.0 |
0.09 |
0.9 |
0.0 |
0.9 |
0.73 |
0.46 |
0.65 |
0.92 |
0.44 |
0.74 |
0.15 |
chr11 | 48185761 | 48191894 | chr11:48185761-48191894:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.63 |
— |
chr11 | 48292435 | 48297811 | chr11:48292435-48297811:+:L1P1:REF | L1P1 | REF | 3prime-truncated | OR4S1 | 0.0 |
0.05 |
0.28 |
0.07 |
0.87 |
0.3 |
0.03 |
0.41 |
0.75 |
0.02 |
0.3 |
0.14 |
chr11 | 48345978 | 48352133 | chr11:48345978-48352133:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | 0.33 |
— | — | 0.61 |
— | — | — | 0.33 |
— | — |
chr11 | 48527917 | 48534075 | chr11:48527917-48534075:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.25 |
0.47 |
0.07 |
0.69 |
0.51 |
0.05 |
0.42 |
0.7 |
0.08 |
0.48 |
0.25 |
chr11 | 48611749 | 48617901 | chr11:48611749-48617901:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.16 |
0.22 |
0.03 |
0.69 |
0.31 |
0.02 |
0.21 |
0.39 |
0.01 |
0.15 |
0.08 |
chr11 | 48647822 | 48649993 | chr11:48647822-48649993:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.02 |
0.18 |
0.04 |
0.04 |
0.66 |
0.12 |
0.03 |
0.18 |
0.44 |
0.01 |
0.19 |
0.21 |
chr11 | 48744637 | 48750715 | chr11:48744637-48750715:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.49 |
0.63 |
0.03 |
0.61 |
0.36 |
0.01 |
0.25 |
0.27 |
0.37 |
0.09 |
0.26 |
chr11 | 48847694 | 48853724 | chr11:48847694-48853724:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.77 |
0.8 |
0.58 |
0.36 |
0.75 |
0.54 |
0.74 |
0.83 |
0.47 |
0.74 |
0.85 |
chr11 | 49725283 | 49731317 | chr11:49725283-49731317:+:L1PA2:REF | L1PA2 | REF | full-length | LOC440040 | 0.01 |
0.72 |
0.74 |
0.56 |
0.52 |
0.7 |
0.68 |
0.65 |
0.7 |
0.71 |
0.64 |
0.7 |
chr11 | 49775119 | 49781151 | chr11:49775119-49781151:-:L1PA2:REF | L1PA2 | REF | full-length | LOC440040 | 0.0 |
0.01 |
0.81 |
0.58 |
0.09 |
0.81 |
0.76 |
0.86 |
0.92 |
0.58 |
0.83 |
0.88 |
chr11 | 54708574 | 54714707 | chr11:54708574-54714707:-:L1PA4:REF | L1PA4 | REF | full-length | OR4A5 | 0.01 |
0.24 |
0.05 |
0.1 |
0.81 |
0.3 |
0.07 |
0.35 |
0.69 |
0.02 |
0.28 |
0.19 |
chr11 | 54849946 | 54851079 | chr11:54849946-54851079:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.35 |
0.36 |
0.22 |
0.8 |
0.43 |
0.12 |
0.58 |
0.72 |
0.19 |
0.58 |
0.61 |
chr11 | 54946966 | 54952988 | chr11:54946966-54952988:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.54 |
0.41 |
0.18 |
0.7 |
0.51 |
0.06 |
— | — | 0.12 |
0.65 |
0.5 |
chr11 | 55084368 | 55090518 | chr11:55084368-55090518:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.34 |
0.11 |
0.78 |
0.4 |
0.17 |
0.53 |
— | — | 0.54 |
0.45 |
chr11 | 55167539 | 55173664 | chr11:55167539-55173664:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.18 |
0.03 |
0.02 |
0.67 |
0.04 |
0.0 |
0.03 |
0.47 |
0.02 |
0.07 |
0.05 |
chr11 | 55459916 | 55465937 | chr11:55459916-55465937:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | — | 0.57 |
0.54 |
0.65 |
0.61 |
0.72 |
0.87 |
0.38 |
0.66 |
0.69 |
chr11 | 55515230 | 55521224 | chr11:55515230-55521224:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | 0.79 |
0.3 |
0.19 |
— | — | 0.24 |
0.54 |
0.46 |
chr11 | 55577164 | 55583342 | chr11:55577164-55583342:+:L1PA3:REF | L1PA3 | REF | full-length | OR4C16 | — | — | 0.19 |
0.09 |
0.94 |
0.43 |
0.3 |
0.55 |
0.76 |
0.05 |
0.52 |
0.26 |
chr11 | 55685638 | 55691665 | chr11:55685638-55691665:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.38 |
0.39 |
— | — | 0.69 |
0.49 |
0.72 |
— | 0.18 |
0.7 |
0.68 |
chr11 | 56103282 | 56103287 | chr11:56103282-56103287:+:L1HS:NONREF | L1HS | KNR | — | OR8H2 | — | — | 0.63 |
— | — | — | — | — | — | 0.39 |
— | — |
chr11 | 56586668 | 56592678 | chr11:56586668-56592678:-:L1PA3:REF | L1PA3 | REF | full-length | OR5M10 | 0.14 |
— | 0.63 |
0.64 |
0.79 |
0.74 |
0.56 |
0.75 |
— | 0.43 |
0.74 |
0.76 |
chr11 | 56943459 | 56946170 | chr11:56943459-56946170:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.08 |
0.56 |
0.38 |
0.79 |
0.48 |
0.55 |
0.6 |
0.81 |
0.2 |
0.61 |
0.35 |
chr11 | 57991051 | 57993139 | chr11:57991051-57993139:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | — | 0.0 |
— | 0.55 |
0.03 |
0.78 |
0.54 |
0.96 |
0.68 |
0.97 |
0.29 |
0.31 |
0.5 |
chr11 | 58000000 | 58000187 | chr11:58000000-58000187:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.85 |
0.76 |
— | 0.83 |
— | 0.95 |
— | 0.92 |
0.47 |
0.89 |
0.81 |
chr11 | 58529738 | 58531777 | chr11:58529738-58531777:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | LPXN | — | — | — | — | — | — | — | — | — | — | 0.59 |
— |