Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11 | 14844351 | 14850498 | chr11:14844351-14850498:+:L1PA3:REF | L1PA3 | REF | full-length | PDE3B | — | — | 0.98 |
— | 0.46 |
0.81 |
0.85 |
— | — | 0.97 |
0.9 |
0.97 |
chr11 | 16141388 | 16147513 | chr11:16141388-16147513:+:L1PA5:REF | L1PA5 | REF | full-length | SOX6 | 0.86 |
0.97 |
0.97 |
0.24 |
0.88 |
0.77 |
0.88 |
0.99 |
0.95 |
0.97 |
0.97 |
0.69 |
chr11 | 16496332 | 16500000 | chr11:16496332-16500000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | SOX6 | 0.85 |
0.56 |
0.95 |
0.33 |
0.87 |
0.56 |
0.47 |
0.96 |
0.87 |
0.94 |
0.89 |
0.59 |
chr11 | 16520489 | 16526642 | chr11:16520489-16526642:+:L1PA4:REF | L1PA4 | REF | full-length | SOX6 | 0.84 |
0.29 |
0.91 |
0.22 |
0.89 |
0.68 |
0.43 |
0.99 |
0.84 |
0.92 |
0.92 |
0.85 |
chr11 | 18127075 | 18128929 | chr11:18127075-18128929:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | MRGPRX3 | 0.01 |
0.52 |
0.76 |
0.14 |
0.88 |
0.59 |
0.92 |
0.59 |
0.87 |
0.29 |
0.72 |
0.81 |
chr11 | 18658797 | 18664912 | chr11:18658797-18664912:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.25 |
0.64 |
0.33 |
0.94 |
0.48 |
0.34 |
0.5 |
— | 0.48 |
0.45 |
0.69 |
chr11 | 19135060 | 19141079 | chr11:19135060-19141079:+:L1PA3:REF | L1PA3 | REF | full-length | ZDHHC13 | — | — | 0.88 |
0.7 |
0.79 |
0.89 |
0.8 |
0.91 |
— | 0.82 |
0.86 |
— |
chr11 | 19581371 | 19587519 | chr11:19581371-19587519:-:L1PA4:REF | L1PA4 | REF | full-length | NAV2 | 0.0 |
0.84 |
0.89 |
0.91 |
0.91 |
0.95 |
0.4 |
0.92 |
0.96 |
0.82 |
0.96 |
0.85 |
chr11 | 21271922 | 21278061 | chr11:21271922-21278061:+:L1PA4:REF | L1PA4 | REF | full-length | NELL1 | 0.01 |
0.21 |
0.51 |
0.21 |
0.91 |
0.63 |
0.06 |
0.67 |
0.93 |
0.41 |
0.58 |
0.65 |
chr11 | 21289217 | 21290087 | chr11:21289217-21290087:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | NELL1 | 0.0 |
0.19 |
0.3 |
0.01 |
0.73 |
0.37 |
0.04 |
0.19 |
0.76 |
0.08 |
0.25 |
0.18 |
chr11 | 22001092 | 22001982 | chr11:22001092-22001982:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.47 |
0.57 |
0.33 |
0.81 |
0.65 |
0.68 |
0.61 |
0.9 |
0.23 |
0.65 |
0.55 |
chr11 | 22016002 | 22022021 | chr11:22016002-22022021:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.82 |
0.71 |
0.63 |
0.27 |
0.77 |
0.8 |
0.73 |
0.91 |
0.57 |
0.75 |
0.84 |
chr11 | 22284807 | 22290788 | chr11:22284807-22290788:+:L1PA2:REF | L1PA2 | REF | full-length | ANO5 | 0.02 |
0.69 |
0.96 |
0.66 |
0.56 |
0.81 |
0.69 |
0.81 |
0.96 |
0.95 |
0.8 |
0.9 |
chr11 | 22523178 | 22529212 | chr11:22523178-22529212:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.71 |
0.87 |
0.64 |
0.08 |
0.53 |
0.8 |
0.66 |
0.25 |
0.49 |
0.7 |
0.88 |
chr11 | 22646925 | 22652945 | chr11:22646925-22652945:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.05 |
0.96 |
0.97 |
0.82 |
0.41 |
0.87 |
0.98 |
0.91 |
0.95 |
0.68 |
0.88 |
0.93 |
chr11 | 23028117 | 23034138 | chr11:23028117-23034138:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.62 |
0.64 |
0.74 |
0.82 |
0.78 |
0.67 |
0.82 |
0.85 |
0.43 |
0.88 |
0.84 |
chr11 | 23298136 | 23304191 | chr11:23298136-23304191:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.92 |
0.94 |
0.92 |
0.92 |
0.97 |
0.84 |
0.95 |
0.97 |
0.73 |
0.98 |
0.95 |
chr11 | 24217113 | 24223259 | chr11:24217113-24223259:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.75 |
0.37 |
0.77 |
0.91 |
0.52 |
0.33 |
0.89 |
0.91 |
0.15 |
0.94 |
0.97 |
chr11 | 24327951 | 24334001 | chr11:24327951-24334001:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.77 |
0.92 |
0.96 |
0.07 |
0.87 |
0.93 |
0.96 |
0.98 |
0.39 |
0.96 |
0.98 |
chr11 | 25275325 | 25281473 | chr11:25275325-25281473:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.49 |
0.33 |
0.33 |
0.71 |
0.46 |
0.23 |
0.51 |
0.88 |
0.2 |
0.43 |
0.74 |
chr11 | 25425132 | 25431158 | chr11:25425132-25431158:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.54 |
0.6 |
0.48 |
0.27 |
0.52 |
0.5 |
0.62 |
0.55 |
0.41 |
0.56 |
0.66 |
chr11 | 25500009 | 25502139 | chr11:25500009-25502139:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.07 |
0.77 |
0.73 |
0.79 |
0.35 |
0.72 |
0.67 |
0.8 |
0.87 |
0.5 |
0.75 |
0.87 |
chr11 | 25643792 | 25649786 | chr11:25643792-25649786:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.06 |
0.9 |
0.79 |
0.65 |
0.72 |
0.84 |
0.79 |
0.82 |
0.97 |
0.54 |
0.76 |
0.98 |
chr11 | 25719115 | 25724896 | chr11:25719115-25724896:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.06 |
0.75 |
0.39 |
0.42 |
0.8 |
0.5 |
0.48 |
0.55 |
0.65 |
0.23 |
0.56 |
0.74 |
chr11 | 26113513 | 26119647 | chr11:26113513-26119647:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
— | 0.82 |
0.89 |
0.91 |
0.94 |
0.62 |
0.99 |
0.98 |
0.68 |
0.97 |
0.98 |
chr11 | 26451095 | 26457233 | chr11:26451095-26457233:+:L1PA3:REF | L1PA3 | REF | full-length | ANO3 | 0.02 |
0.14 |
0.73 |
0.46 |
0.88 |
0.69 |
0.51 |
0.76 |
0.95 |
0.63 |
0.78 |
0.71 |
chr11 | 26882200 | 26883939 | chr11:26882200-26883939:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.16 |
— |
chr11 | 26965118 | 26971134 | chr11:26965118-26971134:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.79 |
0.94 |
0.7 |
0.06 |
0.97 |
0.91 |
0.98 |
0.91 |
0.56 |
0.99 |
0.86 |
chr11 | 27219703 | 27225730 | chr11:27219703-27225730:+:L1PA2:REF | L1PA2 | REF | full-length | BBOX1-AS1 | 0.0 |
0.84 |
0.93 |
0.93 |
0.1 |
0.98 |
0.96 |
0.96 |
0.61 |
0.01 |
0.99 |
0.97 |
chr11 | 27665301 | 27671022 | chr11:27665301-27671022:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | BDNF-AS | — | — | — | — | — | — | — | — | — | — | 0.33 |
— |
chr11 | 27682417 | 27688872 | chr11:27682417-27688872:-:L1PA7:REF | L1PA7 | REF | full-length | BDNF-AS | 0.0 |
0.85 |
0.97 |
0.55 |
0.86 |
0.95 |
0.24 |
0.95 |
0.96 |
0.29 |
0.91 |
0.98 |
chr11 | 27939073 | 27945209 | chr11:27939073-27945209:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.75 |
0.96 |
— | 0.97 |
0.95 |
0.31 |
0.95 |
0.95 |
0.42 |
0.97 |
0.97 |
chr11 | 28216563 | 28222701 | chr11:28216563-28222701:-:L1PA5:REF | L1PA5 | REF | full-length | METTL15 | 0.89 |
0.95 |
0.96 |
0.97 |
0.89 |
0.97 |
0.99 |
0.98 |
0.99 |
0.94 |
0.98 |
0.98 |
chr11 | 28236554 | 28238756 | chr11:28236554-28238756:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | METTL15 | 0.93 |
0.9 |
0.97 |
0.98 |
0.92 |
0.98 |
0.98 |
0.98 |
0.97 |
— | 0.98 |
0.98 |
chr11 | 28372620 | 28378682 | chr11:28372620-28378682:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.97 |
0.95 |
0.95 |
0.61 |
0.96 |
0.8 |
0.97 |
0.97 |
0.74 |
0.98 |
0.99 |
chr11 | 29050742 | 29051784 | chr11:29050742-29051784:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.05 |
0.62 |
0.47 |
0.9 |
0.82 |
0.03 |
0.97 |
0.96 |
0.13 |
0.93 |
0.99 |
chr11 | 29794460 | 29798913 | chr11:29794460-29798913:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.09 |
0.24 |
0.72 |
0.81 |
0.85 |
0.67 |
0.86 |
0.9 |
0.89 |
0.68 |
0.78 |
0.9 |
chr11 | 30051207 | 30057234 | chr11:30051207-30057234:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.25 |
0.48 |
0.25 |
0.83 |
0.65 |
0.31 |
0.75 |
— | 0.3 |
0.61 |
0.88 |
chr11 | 30263143 | 30269287 | chr11:30263143-30269287:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.04 |
0.67 |
0.89 |
0.6 |
0.9 |
0.72 |
0.63 |
0.76 |
0.96 |
0.6 |
0.76 |
0.96 |
chr11 | 31180399 | 31182593 | chr11:31180399-31182593:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | DCDC1 | — | — | — | — | — | — | — | — | — | — | 0.24 |
— |
chr11 | 31315654 | 31321680 | chr11:31315654-31321680:-:L1HS:REF | L1HS | REF | full-length | DCDC1 | 0.02 |
0.93 |
0.97 |
0.82 |
0.1 |
0.79 |
0.86 |
0.88 |
0.96 |
0.96 |
0.82 |
0.98 |
chr11 | 31329394 | 31335540 | chr11:31329394-31335540:-:L1PA6:REF | L1PA6 | REF | full-length | DCDC1 | 0.01 |
0.3 |
0.64 |
0.16 |
— | 0.39 |
0.03 |
— | — | 0.38 |
0.39 |
— |
chr11 | 31544010 | 31550144 | chr11:31544010-31550144:+:L1PA3:REF | L1PA3 | REF | full-length | ELP4 | 0.96 |
0.92 |
0.98 |
0.99 |
0.85 |
0.99 |
0.98 |
0.97 |
0.98 |
0.97 |
0.98 |
0.99 |
chr11 | 31740753 | 31746893 | chr11:31740753-31746893:+:L1PA4:REF | L1PA4 | REF | full-length | ELP4 | 0.97 |
0.96 |
0.97 |
0.98 |
0.92 |
0.98 |
0.98 |
0.97 |
0.97 |
0.97 |
0.98 |
0.98 |
chr11 | 32661712 | 32667810 | chr11:32661712-32667810:-:L1PA5:REF | L1PA5 | REF | full-length | CCDC73 | 0.04 |
0.74 |
0.89 |
0.4 |
0.9 |
0.63 |
0.35 |
0.53 |
0.92 |
0.82 |
0.78 |
0.97 |
chr11 | 32743548 | 32748080 | chr11:32743548-32748080:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | CCDC73 | — | — | — | — | — | — | — | — | — | — | 0.17 |
— |
chr11 | 32762628 | 32768484 | chr11:32762628-32768484:+:L1PA5:REF | L1PA5 | REF | full-length | CCDC73 | 0.0 |
0.87 |
0.87 |
0.84 |
0.87 |
0.55 |
0.51 |
0.65 |
0.93 |
0.75 |
0.54 |
0.95 |
chr11 | 32941250 | 32947256 | chr11:32941250-32947256:-:L1PA3:REF | L1PA3 | REF | full-length | QSER1 | 0.98 |
0.97 |
0.98 |
0.99 |
0.95 |
0.98 |
0.97 |
0.98 |
0.97 |
0.97 |
0.98 |
0.98 |
chr11 | 34691292 | 34692830 | chr11:34691292-34692830:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.94 |
0.98 |
0.97 |
0.91 |
0.08 |
0.8 |
0.97 |
0.93 |
— | 0.89 |
0.98 |
0.99 |
chr11 | 34760210 | 34764985 | chr11:34760210-34764985:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.74 |
0.85 |
0.86 |
0.83 |
0.91 |
0.78 |
0.91 |
0.82 |
0.96 |
— | 0.9 |
0.91 |