Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5 | 51636771 | 51642771 | chr5:51636771-51642771:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.04 |
0.71 |
0.9 |
0.08 |
0.8 |
0.73 |
0.15 |
0.53 |
0.93 |
0.94 |
0.52 |
0.58 |
chr5 | 51785150 | 51791298 | chr5:51785150-51791298:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.59 |
0.6 |
0.11 |
0.87 |
0.54 |
0.03 |
0.45 |
0.88 |
0.78 |
0.5 |
0.57 |
chr5 | 51951743 | 51957834 | chr5:51951743-51957834:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.87 |
0.68 |
0.22 |
0.87 |
0.76 |
0.59 |
0.7 |
0.97 |
0.84 |
0.76 |
0.78 |
chr5 | 52086499 | 52088220 | chr5:52086499-52088220:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.1 |
0.84 |
0.64 |
0.54 |
0.72 |
0.73 |
0.58 |
0.71 |
0.94 |
0.78 |
0.7 |
0.91 |
chr5 | 52097924 | 52102941 | chr5:52097924-52102941:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.37 |
0.21 |
0.03 |
0.76 |
0.27 |
0.01 |
0.17 |
0.86 |
0.4 |
0.22 |
0.53 |
chr5 | 52970664 | 52976801 | chr5:52970664-52976801:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.93 |
0.93 |
0.95 |
0.86 |
0.83 |
0.89 |
0.98 |
0.96 |
0.74 |
0.94 |
0.97 |
chr5 | 53141066 | 53147199 | chr5:53141066-53147199:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.44 |
0.98 |
0.87 |
0.94 |
0.93 |
0.84 |
0.68 |
0.91 |
0.92 |
0.85 |
0.97 |
0.95 |
chr5 | 53267996 | 53274186 | chr5:53267996-53274186:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | 0.9 |
— | 0.31 |
— | — | — | 0.92 |
0.9 |
chr5 | 53660005 | 53665971 | chr5:53660005-53665971:-:L1PA4:REF | L1PA4 | REF | full-length | NDUFS4 | 0.97 |
0.93 |
0.9 |
0.96 |
0.93 |
0.93 |
0.98 |
0.92 |
0.98 |
0.89 |
0.99 |
0.99 |
chr5 | 53750516 | 53751979 | chr5:53750516-53751979:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.0 |
0.8 |
0.85 |
0.03 |
0.91 |
0.83 |
0.35 |
0.68 |
1.0 |
0.87 |
0.7 |
1.0 |
chr5 | 55012859 | 55014226 | chr5:55012859-55014226:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | LOC102467081 | 0.02 |
0.6 |
0.33 |
0.02 |
0.76 |
0.74 |
0.02 |
0.58 |
0.92 |
0.16 |
0.71 |
0.32 |
chr5 | 55075360 | 55081502 | chr5:55075360-55081502:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.59 |
0.87 |
0.56 |
0.84 |
0.86 |
0.62 |
0.83 |
0.94 |
0.56 |
0.82 |
0.91 |
chr5 | 55096561 | 55101301 | chr5:55096561-55101301:+:L1P2:REF | L1P2 | REF | 3prime-truncated | GZMA | 0.01 |
0.84 |
0.82 |
0.02 |
0.84 |
0.62 |
0.04 |
0.56 |
0.88 |
0.54 |
0.56 |
0.6 |
chr5 | 55803330 | 55809463 | chr5:55803330-55809463:-:L1PA3:REF | L1PA3 | REF | full-length | DDX4 | 0.01 |
0.97 |
0.84 |
0.46 |
0.91 |
0.69 |
0.64 |
0.77 |
0.94 |
0.8 |
0.84 |
0.96 |
chr5 | 57351496 | 57357526 | chr5:57351496-57357526:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.17 |
0.94 |
0.95 |
0.92 |
0.19 |
0.89 |
0.84 |
0.96 |
0.94 |
0.75 |
0.98 |
0.98 |
chr5 | 57869385 | 57870876 | chr5:57869385-57870876:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.13 |
0.98 |
0.97 |
0.95 |
0.9 |
0.92 |
0.69 |
0.95 |
0.98 |
0.8 |
0.98 |
0.97 |
chr5 | 57966585 | 57972749 | chr5:57966585-57972749:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.04 |
— | 0.97 |
— | — | 0.86 |
0.22 |
— | — | 0.43 |
— | — |
chr5 | 58215915 | 58222036 | chr5:58215915-58222036:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.27 |
0.96 |
0.97 |
0.96 |
0.88 |
0.88 |
0.24 |
0.92 |
0.95 |
0.55 |
0.96 |
0.99 |
chr5 | 58288061 | 58294158 | chr5:58288061-58294158:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.26 |
0.8 |
0.95 |
0.91 |
0.78 |
0.83 |
0.59 |
0.88 |
0.97 |
0.67 |
0.96 |
0.92 |
chr5 | 58384174 | 58390206 | chr5:58384174-58390206:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
— | — | — | 0.91 |
0.91 |
— | — | — | — | 0.95 |
0.97 |
chr5 | 58536154 | 58542290 | chr5:58536154-58542290:-:L1PA3:REF | L1PA3 | REF | full-length | LINC02108 | 0.02 |
0.59 |
0.75 |
0.67 |
0.85 |
0.64 |
0.52 |
0.64 |
0.92 |
0.41 |
0.72 |
0.93 |
chr5 | 58552269 | 58558283 | chr5:58552269-58558283:-:L1PA2:REF | L1PA2 | REF | full-length | LINC02108 | 0.02 |
0.55 |
0.85 |
0.74 |
0.12 |
0.72 |
0.77 |
0.74 |
0.89 |
0.62 |
0.78 |
0.46 |
chr5 | 59394720 | 59400744 | chr5:59394720-59400744:+:L1PA3:REF | L1PA3 | REF | full-length | PDE4D | 0.02 |
0.94 |
0.97 |
0.88 |
0.92 |
0.83 |
0.91 |
0.89 |
0.98 |
0.97 |
0.9 |
0.88 |
chr5 | 60044367 | 60050391 | chr5:60044367-60050391:-:L1PA3:REF | L1PA3 | REF | full-length | PDE4D | 0.0 |
0.58 |
0.75 |
0.61 |
0.82 |
0.74 |
0.31 |
— | 0.91 |
0.5 |
0.73 |
0.63 |
chr5 | 60103870 | 60110024 | chr5:60103870-60110024:+:L1PA3:REF | L1PA3 | REF | full-length | PDE4D | 0.04 |
0.35 |
0.84 |
0.53 |
0.82 |
0.81 |
0.5 |
0.65 |
0.97 |
0.34 |
0.63 |
0.76 |
chr5 | 60420575 | 60426695 | chr5:60420575-60426695:+:L1PA6:REF | L1PA6 | REF | full-length | PDE4D | 0.03 |
0.31 |
0.75 |
0.38 |
0.67 |
0.73 |
0.89 |
0.59 |
0.9 |
0.13 |
0.55 |
0.64 |
chr5 | 60570768 | 60576107 | chr5:60570768-60576107:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.64 |
0.98 |
0.98 |
1.0 |
0.97 |
0.91 |
0.98 |
1.0 |
0.96 |
0.91 |
0.96 |
0.84 |
chr5 | 60860389 | 60866437 | chr5:60860389-60866437:+:L1PA3:REF | L1PA3 | REF | full-length | ERCC8 | — | — | — | — | — | — | 0.55 |
— | — | — | — | — |
chr5 | 61238874 | 61245001 | chr5:61238874-61245001:+:L1PA4:REF | L1PA4 | REF | full-length | LINC02057 | 0.01 |
0.96 |
0.93 |
0.91 |
0.89 |
0.89 |
0.63 |
0.9 |
0.95 |
0.79 |
0.96 |
0.97 |
chr5 | 62798974 | 62804997 | chr5:62798974-62804997:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.81 |
0.7 |
0.65 |
0.31 |
0.71 |
0.31 |
0.77 |
— | 0.59 |
0.71 |
0.76 |
chr5 | 62817292 | 62823372 | chr5:62817292-62823372:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.9 |
0.91 |
0.78 |
0.83 |
0.81 |
0.85 |
0.83 |
0.95 |
0.8 |
0.77 |
0.94 |
chr5 | 63090181 | 63094755 | chr5:63090181-63094755:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.02 |
0.94 |
0.9 |
0.52 |
0.92 |
0.82 |
0.55 |
0.84 |
0.98 |
0.63 |
0.8 |
0.94 |
chr5 | 63375698 | 63381967 | chr5:63375698-63381967:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.9 |
— | 0.02 |
0.82 |
0.15 |
0.0 |
0.04 |
0.78 |
0.0 |
0.15 |
0.1 |
chr5 | 63506972 | 63513441 | chr5:63506972-63513441:+:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.32 |
— |
chr5 | 63581796 | 63587933 | chr5:63581796-63587933:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.87 |
0.55 |
0.47 |
0.9 |
0.68 |
0.38 |
0.67 |
0.93 |
0.38 |
0.69 |
0.67 |
chr5 | 64129091 | 64135124 | chr5:64129091-64135124:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.93 |
0.86 |
0.67 |
0.15 |
0.82 |
0.79 |
0.82 |
0.93 |
0.58 |
0.76 |
0.85 |
chr5 | 64464920 | 64470915 | chr5:64464920-64470915:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.65 |
0.59 |
— | 0.73 |
0.45 |
0.5 |
0.38 |
— | 0.3 |
0.56 |
0.27 |
chr5 | 64473756 | 64477100 | chr5:64473756-64477100:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.05 |
0.44 |
0.03 |
0.0 |
0.75 |
0.2 |
0.07 |
0.18 |
0.73 |
0.17 |
0.22 |
0.0 |
chr5 | 64477092 | 64483253 | chr5:64477092-64483253:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.66 |
0.53 |
0.44 |
0.77 |
0.56 |
0.49 |
0.57 |
0.8 |
0.4 |
0.59 |
0.33 |
chr5 | 64709034 | 64715065 | chr5:64709034-64715065:-:L1PA2:REF | L1PA2 | REF | full-length | SHISAL2B | 0.73 |
0.96 |
0.97 |
0.87 |
0.06 |
0.94 |
0.39 |
0.98 |
0.85 |
0.66 |
0.96 |
0.98 |
chr5 | 65164017 | 65170048 | chr5:65164017-65170048:+:L1PA2:REF | L1PA2 | REF | full-length | ADAMTS6 | 0.62 |
0.68 |
0.98 |
0.84 |
0.9 |
0.97 |
0.97 |
0.96 |
0.96 |
0.95 |
0.98 |
0.98 |
chr5 | 65370262 | 65376273 | chr5:65370262-65376273:+:L1PA3:REF | L1PA3 | REF | full-length | ADAMTS6 | 0.72 |
0.95 |
0.97 |
0.83 |
0.54 |
0.99 |
0.96 |
0.99 |
0.98 |
0.94 |
0.98 |
0.94 |
chr5 | 65846889 | 65853068 | chr5:65846889-65853068:-:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.17 |
— |
chr5 | 66105953 | 66112079 | chr5:66105953-66112079:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | 0.89 |
— | — | — | 0.31 |
— |
chr5 | 66382748 | 66388765 | chr5:66382748-66388765:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
— | — | 0.78 |
— | 0.8 |
0.5 |
— | — | — | 0.76 |
— |
chr5 | 66750283 | 66754219 | chr5:66750283-66754219:+:L1HS:REF | L1HS | REF | 3prime-truncated | MAST4 | 0.01 |
0.97 |
0.97 |
0.58 |
0.89 |
0.79 |
0.6 |
0.78 |
0.97 |
0.93 |
0.78 |
0.82 |
chr5 | 67598336 | 67604471 | chr5:67598336-67604471:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.98 |
0.7 |
0.05 |
0.9 |
0.79 |
0.96 |
0.52 |
0.95 |
0.68 |
0.59 |
0.91 |
chr5 | 67703676 | 67708855 | chr5:67703676-67708855:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.04 |
0.98 |
0.82 |
0.23 |
0.91 |
0.89 |
0.72 |
0.72 |
0.94 |
0.81 |
0.65 |
0.94 |
chr5 | 67736897 | 67742931 | chr5:67736897-67742931:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.17 |
0.89 |
0.91 |
0.56 |
0.84 |
0.93 |
0.91 |
0.78 |
0.98 |
0.94 |
0.8 |
0.97 |
chr5 | 67757565 | 67763694 | chr5:67757565-67763694:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.15 |
0.97 |
0.81 |
0.44 |
0.87 |
0.88 |
0.96 |
0.73 |
0.91 |
0.86 |
0.69 |
0.97 |