Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6 | 116638696 | 116644847 | chr6:116638696-116644847:+:L1PA3:REF | L1PA3 | REF | full-length | ZUP1 | 0.98 |
0.93 |
0.98 |
0.86 |
0.89 |
0.98 |
0.91 |
0.93 |
0.98 |
0.98 |
0.98 |
0.99 |
chr6 | 116816523 | 116818252 | chr6:116816523-116818252:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | GPRC6A | 0.0 |
0.94 |
0.93 |
0.78 |
0.3 |
0.84 |
0.87 |
0.86 |
0.9 |
0.92 |
0.86 |
0.97 |
chr6 | 117040919 | 117044554 | chr6:117040919-117044554:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
0.24 |
0.84 |
0.17 |
0.85 |
0.48 |
0.02 |
0.48 |
0.9 |
0.46 |
0.59 |
0.98 |
chr6 | 117102131 | 117108163 | chr6:117102131-117108163:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.76 |
0.86 |
0.77 |
0.42 |
0.73 |
0.88 |
— | 0.95 |
0.82 |
0.81 |
0.98 |
chr6 | 117181817 | 117187827 | chr6:117181817-117187827:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.87 |
0.92 |
0.8 |
0.05 |
0.66 |
0.83 |
0.8 |
0.94 |
0.88 |
0.76 |
0.98 |
chr6 | 117244752 | 117250783 | chr6:117244752-117250783:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.26 |
0.7 |
0.44 |
0.04 |
0.54 |
0.62 |
0.62 |
0.62 |
0.01 |
0.59 |
0.74 |
chr6 | 117721294 | 117727439 | chr6:117721294-117727439:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.72 |
0.98 |
0.98 |
0.95 |
0.96 |
0.98 |
0.89 |
0.91 |
0.97 |
0.95 |
0.97 |
0.99 |
chr6 | 118338046 | 118343006 | chr6:118338046-118343006:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr6 | 118421031 | 118426804 | chr6:118421031-118426804:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.03 |
0.32 |
0.23 |
— | 0.94 |
0.82 |
0.14 |
0.98 |
0.98 |
0.73 |
0.91 |
0.51 |
chr6 | 118426816 | 118432950 | chr6:118426816-118432950:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.73 |
0.58 |
0.58 |
0.85 |
0.8 |
0.31 |
0.81 |
0.96 |
0.47 |
0.91 |
0.74 |
chr6 | 118796300 | 118796914 | chr6:118796300-118796914:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.82 |
0.77 |
0.97 |
0.85 |
— | 0.9 |
0.66 |
0.89 |
0.96 |
0.95 |
0.95 |
0.81 |
chr6 | 119417672 | 119424079 | chr6:119417672-119424079:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.08 |
0.88 |
0.08 |
0.08 |
0.76 |
0.43 |
0.14 |
0.5 |
0.9 |
0.21 |
0.64 |
1.0 |
chr6 | 120263391 | 120268890 | chr6:120263391-120268890:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.79 |
0.73 |
0.54 |
0.89 |
0.58 |
0.86 |
0.6 |
0.97 |
0.63 |
0.67 |
0.97 |
chr6 | 120522337 | 120523948 | chr6:120522337-120523948:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.89 |
0.68 |
0.31 |
0.85 |
0.73 |
0.51 |
0.73 |
0.94 |
0.61 |
0.74 |
0.95 |
chr6 | 120637494 | 120643647 | chr6:120637494-120643647:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.62 |
0.53 |
0.23 |
0.74 |
0.46 |
0.59 |
0.71 |
0.84 |
0.54 |
0.65 |
0.79 |
chr6 | 120688739 | 120694768 | chr6:120688739-120694768:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.67 |
0.83 |
0.49 |
0.27 |
0.74 |
0.64 |
0.62 |
0.87 |
0.68 |
0.79 |
0.93 |
chr6 | 120748350 | 120754492 | chr6:120748350-120754492:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.34 |
0.34 |
0.08 |
0.71 |
0.38 |
0.07 |
0.36 |
0.64 |
0.11 |
0.44 |
0.96 |
chr6 | 120817925 | 120819054 | chr6:120817925-120819054:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.93 |
0.79 |
0.52 |
0.9 |
0.65 |
0.6 |
0.75 |
0.96 |
0.64 |
0.72 |
0.99 |
chr6 | 121162716 | 121168725 | chr6:121162716-121168725:+:L1HS:REF | L1HS | REF | full-length | TBC1D32 | 0.22 |
0.98 |
0.91 |
0.93 |
0.11 |
0.95 |
0.82 |
0.93 |
0.98 |
0.96 |
0.97 |
0.94 |
chr6 | 121702938 | 121709090 | chr6:121702938-121709090:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.48 |
0.59 |
0.99 |
0.71 |
0.97 |
0.02 |
0.49 |
0.74 |
0.96 |
0.99 |
0.71 |
chr6 | 121760198 | 121762666 | chr6:121760198-121762666:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.01 |
0.92 |
0.96 |
0.95 |
0.89 |
0.98 |
0.26 |
0.99 |
0.9 |
0.93 |
0.97 |
0.99 |
chr6 | 122537169 | 122543352 | chr6:122537169-122543352:-:L1PA4:REF | L1PA4 | REF | full-length | PKIB | 0.39 |
0.94 |
0.76 |
0.51 |
0.9 |
0.66 |
0.57 |
0.7 |
0.92 |
0.75 |
0.71 |
0.96 |
chr6 | 123472074 | 123478070 | chr6:123472074-123478070:+:L1PA3:REF | L1PA3 | REF | full-length | TRDN | 0.39 |
0.93 |
0.85 |
0.63 |
0.12 |
0.72 |
0.69 |
0.79 |
0.91 |
0.96 |
0.76 |
0.87 |
chr6 | 123532791 | 123532793 | chr6:123532791-123532793:-:L1HS:NONREF | L1HS | KNR | — | TRDN | 0.16 |
0.98 |
0.9 |
— | — | — | — | — | — | — | — | — |
chr6 | 124348613 | 124349000 | chr6:124348613-124349000:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | NKAIN2 | — | — | — | — | — | — | 0.2 |
— | — | — | 0.54 |
— |
chr6 | 124407195 | 124413266 | chr6:124407195-124413266:-:L1PA4:REF | L1PA4 | REF | full-length | NKAIN2 | 0.02 |
0.43 |
0.98 |
0.43 |
0.91 |
0.8 |
0.07 |
0.82 |
0.95 |
0.93 |
0.82 |
0.79 |
chr6 | 124706843 | 124712830 | chr6:124706843-124712830:-:L1PA2:REF | L1PA2 | REF | full-length | NKAIN2 | 0.02 |
0.52 |
0.95 |
0.65 |
0.19 |
0.79 |
0.81 |
0.82 |
0.85 |
0.89 |
0.89 |
0.85 |
chr6 | 124725696 | 124731722 | chr6:124725696-124731722:+:L1PA2:REF | L1PA2 | REF | full-length | NKAIN2 | 0.18 |
0.68 |
0.93 |
0.36 |
0.41 |
0.73 |
0.56 |
0.74 |
0.92 |
0.92 |
0.83 |
0.79 |
chr6 | 124804502 | 124810643 | chr6:124804502-124810643:+:L1PA3:REF | L1PA3 | REF | full-length | NKAIN2 | 0.07 |
0.84 |
0.95 |
0.75 |
0.82 |
0.82 |
0.56 |
0.92 |
0.88 |
0.96 |
0.94 |
0.94 |
chr6 | 125279944 | 125282063 | chr6:125279944-125282063:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | HDDC2 | 0.96 |
0.98 |
0.97 |
0.97 |
0.86 |
0.96 |
0.98 |
0.98 |
0.97 |
0.95 |
0.93 |
0.97 |
chr6 | 126165293 | 126167573 | chr6:126165293-126167573:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.06 |
— |
chr6 | 126237812 | 126241342 | chr6:126237812-126241342:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.51 |
0.8 |
0.85 |
0.92 |
0.92 |
0.67 |
0.97 |
0.65 |
0.94 |
0.84 |
0.71 |
0.97 |
chr6 | 126326598 | 126332742 | chr6:126326598-126332742:+:L1PA3:REF | L1PA3 | REF | full-length | CENPW | 0.24 |
0.91 |
0.87 |
0.8 |
0.86 |
0.76 |
0.41 |
0.82 |
0.94 |
0.91 |
0.79 |
0.97 |
chr6 | 126673551 | 126679569 | chr6:126673551-126679569:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.82 |
0.77 |
0.73 |
0.85 |
0.87 |
0.09 |
0.9 |
0.97 |
0.58 |
0.96 |
0.97 |
chr6 | 127043252 | 127049363 | chr6:127043252-127049363:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.33 |
— |
chr6 | 127255062 | 127261128 | chr6:127255062-127261128:+:L1PA6:REF | L1PA6 | REF | full-length | RNF146 | 0.02 |
0.73 |
0.75 |
0.62 |
0.71 |
0.76 |
0.44 |
0.7 |
0.83 |
0.81 |
0.67 |
0.83 |
chr6 | 127593292 | 127599292 | chr6:127593292-127599292:+:L1PA2:REF | L1PA2 | REF | full-length | C6orf58 | 0.02 |
0.48 |
0.95 |
0.86 |
0.14 |
0.85 |
0.69 |
0.92 |
0.8 |
0.32 |
0.96 |
0.99 |
chr6 | 127779940 | 127782766 | chr6:127779940-127782766:-:L1P2:REF | L1P2 | REF | 3prime-truncated | THEMIS | 0.0 |
0.94 |
0.66 |
0.26 |
0.87 |
0.63 |
0.14 |
0.61 |
0.87 |
0.67 |
0.69 |
0.86 |
chr6 | 128774138 | 128780383 | chr6:128774138-128780383:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.67 |
0.9 |
0.33 |
— | 0.76 |
0.06 |
0.92 |
— | 0.97 |
0.86 |
1.0 |
chr6 | 128829462 | 128835615 | chr6:128829462-128835615:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.48 |
0.74 |
0.59 |
0.91 |
0.89 |
0.2 |
0.85 |
0.96 |
0.76 |
0.87 |
0.97 |
chr6 | 128905633 | 128911663 | chr6:128905633-128911663:-:L1PA3:REF | L1PA3 | REF | full-length | LAMA2 | 0.01 |
0.73 |
0.88 |
0.8 |
0.11 |
0.96 |
0.79 |
0.96 |
0.86 |
0.8 |
0.87 |
0.91 |
chr6 | 128998385 | 129000000 | chr6:128998385-129000000:+:L1HS:REF | L1HS | REF | 3prime-truncated | LAMA2 | 0.09 |
0.89 |
— | — | 0.38 |
0.98 |
0.8 |
0.95 |
0.95 |
0.77 |
0.97 |
0.99 |
chr6 | 129167160 | 129173198 | chr6:129167160-129173198:-:L1PA2:REF | L1PA2 | REF | full-length | LAMA2 | 0.01 |
0.87 |
0.94 |
0.97 |
0.26 |
0.87 |
0.51 |
0.91 |
0.65 |
0.93 |
0.93 |
0.99 |
chr6 | 129568677 | 129575117 | chr6:129568677-129575117:+:L1PA7:REF | L1PA7 | REF | full-length | ARHGAP18 | 0.38 |
0.74 |
0.88 |
0.91 |
0.91 |
0.97 |
0.88 |
0.95 |
0.93 |
0.85 |
0.97 |
0.94 |
chr6 | 130346085 | 130352219 | chr6:130346085-130352219:+:L1PA4:REF | L1PA4 | REF | full-length | SAMD3 | 0.01 |
0.89 |
0.89 |
0.22 |
0.9 |
0.94 |
0.47 |
0.82 |
0.93 |
0.74 |
0.82 |
0.97 |
chr6 | 130475515 | 130481667 | chr6:130475515-130481667:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.92 |
0.94 |
0.52 |
0.92 |
0.98 |
0.75 |
0.91 |
0.97 |
0.86 |
0.81 |
0.98 |
chr6 | 131234906 | 131241067 | chr6:131234906-131241067:-:L1PA4:REF | L1PA4 | REF | full-length | AKAP7 | 0.03 |
0.94 |
0.95 |
0.77 |
0.92 |
0.92 |
0.95 |
0.93 |
0.93 |
0.92 |
0.96 |
0.96 |
chr6 | 132634829 | 132638492 | chr6:132634829-132638492:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | TAAR1 | 0.0 |
0.04 |
0.47 |
0.0 |
0.8 |
0.25 |
0.48 |
0.33 |
0.81 |
0.51 |
0.4 |
0.48 |
chr6 | 132986165 | 132986608 | chr6:132986165-132986608:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
0.69 |
0.77 |
0.03 |
0.83 |
0.36 |
0.1 |
0.81 |
0.97 |
0.83 |
0.78 |
0.61 |
chr6 | 133020691 | 133026746 | chr6:133020691-133026746:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.93 |
— | — | 0.1 |
0.82 |
0.91 |
— | 0.96 |
— | — | 0.9 |