Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7 | 9398757 | 9404781 | chr7:9398757-9404781:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.81 |
0.89 |
0.77 |
0.82 |
0.84 |
0.76 |
0.92 |
0.94 |
0.71 |
0.87 |
0.99 |
chr7 | 9436392 | 9442524 | chr7:9436392-9442524:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.2 |
0.31 |
0.29 |
0.86 |
0.5 |
0.28 |
0.6 |
0.85 |
0.3 |
0.59 |
0.96 |
chr7 | 10363830 | 10368188 | chr7:10363830-10368188:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | 0.41 |
— | 0.96 |
— | 0.0 |
— | — | — | 0.21 |
0.96 |
chr7 | 10372560 | 10378699 | chr7:10372560-10378699:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | 0.08 |
— | — | 0.02 |
0.26 |
— |
chr7 | 10625076 | 10626565 | chr7:10625076-10626565:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | MGC4859 | — | — | 0.46 |
0.05 |
— | 0.3 |
0.05 |
— | — | 0.55 |
0.4 |
— |
chr7 | 10695593 | 10702015 | chr7:10695593-10702015:+:L1PA7:REF | L1PA7 | REF | full-length | MGC4859 | 0.56 |
0.67 |
0.33 |
0.07 |
0.85 |
0.51 |
0.34 |
0.64 |
0.71 |
0.22 |
0.62 |
0.97 |
chr7 | 10747087 | 10753227 | chr7:10747087-10753227:+:L1PA5:REF | L1PA5 | REF | full-length | MGC4859 | — | — | — | — | — | — | — | — | — | — | 0.2 |
— |
chr7 | 11389460 | 11392052 | chr7:11389460-11392052:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | THSD7A | 0.01 |
0.65 |
0.44 |
0.12 |
0.81 |
0.29 |
0.08 |
0.27 |
0.97 |
0.82 |
0.56 |
0.94 |
chr7 | 11674973 | 11681399 | chr7:11674973-11681399:+:L1PA7:REF | L1PA7 | REF | full-length | THSD7A | 0.01 |
0.09 |
0.7 |
0.53 |
0.88 |
0.52 |
0.41 |
0.56 |
0.94 |
0.82 |
0.66 |
0.96 |
chr7 | 12497211 | 12500000 | chr7:12497211-12500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | LOC102725191 | 0.01 |
0.07 |
0.78 |
0.01 |
0.03 |
0.84 |
0.01 |
0.87 |
0.88 |
0.01 |
0.87 |
0.6 |
chr7 | 13002207 | 13003429 | chr7:13002207-13003429:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr7 | 13268694 | 13274829 | chr7:13268694-13274829:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | 0.82 |
0.55 |
0.86 |
— | 0.74 |
0.81 |
— | 0.73 |
0.92 |
0.97 |
chr7 | 13765644 | 13767081 | chr7:13765644-13767081:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.04 |
0.8 |
0.9 |
0.65 |
0.67 |
0.96 |
0.87 |
0.97 |
0.97 |
0.96 |
0.97 |
0.92 |
chr7 | 13806269 | 13812292 | chr7:13806269-13812292:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | — | — | — | — | 0.71 |
0.86 |
— | 0.84 |
0.93 |
0.79 |
chr7 | 14278870 | 14285021 | chr7:14278870-14285021:+:L1PA3:REF | L1PA3 | REF | full-length | DGKB | 0.01 |
0.5 |
0.93 |
0.44 |
0.15 |
0.61 |
0.56 |
0.84 |
0.59 |
0.94 |
0.88 |
0.87 |
chr7 | 14313260 | 14319290 | chr7:14313260-14319290:+:L1PA3:REF | L1PA3 | REF | full-length | DGKB | 0.01 |
0.37 |
0.93 |
0.58 |
0.05 |
0.83 |
0.72 |
0.9 |
0.78 |
0.88 |
0.92 |
0.98 |
chr7 | 14647630 | 14653668 | chr7:14647630-14653668:+:L1PA2:REF | L1PA2 | REF | full-length | DGKB | 0.04 |
0.8 |
0.89 |
0.72 |
0.25 |
0.88 |
0.65 |
0.89 |
0.96 |
0.94 |
0.96 |
0.99 |
chr7 | 15517372 | 15523845 | chr7:15517372-15523845:+:L1PA7:REF | L1PA7 | REF | full-length | AGMO | — | — | 0.9 |
— | 0.87 |
— | — | — | — | 0.98 |
0.98 |
— |
chr7 | 15547309 | 15553333 | chr7:15547309-15553333:+:L1PA2:REF | L1PA2 | REF | full-length | AGMO | 0.02 |
0.8 |
0.95 |
0.62 |
0.08 |
0.91 |
0.92 |
0.94 |
0.51 |
0.9 |
0.98 |
0.98 |
chr7 | 15940231 | 15946255 | chr7:15940231-15946255:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.72 |
0.97 |
0.73 |
0.1 |
0.96 |
0.8 |
0.98 |
0.98 |
0.92 |
0.97 |
0.98 |
chr7 | 16216428 | 16222457 | chr7:16216428-16222457:+:L1PA2:REF | L1PA2 | REF | full-length | CRPPA | 0.92 |
0.9 |
0.9 |
0.65 |
0.11 |
0.89 |
0.84 |
0.96 |
0.89 |
0.82 |
0.91 |
0.98 |
chr7 | 16248596 | 16252056 | chr7:16248596-16252056:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CRPPA | 0.93 |
0.96 |
0.95 |
0.24 |
0.91 |
0.8 |
0.7 |
0.92 |
0.93 |
0.86 |
0.94 |
0.98 |
chr7 | 16378112 | 16384140 | chr7:16378112-16384140:-:L1PA3:REF | L1PA3 | REF | full-length | CRPPA | — | — | — | — | 0.87 |
— | 0.75 |
— | — | — | 0.96 |
— |
chr7 | 17215217 | 17221355 | chr7:17215217-17221355:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.26 |
0.3 |
0.83 |
0.83 |
0.88 |
0.88 |
0.84 |
0.96 |
0.84 |
0.77 |
0.88 |
0.85 |
chr7 | 17734717 | 17740820 | chr7:17734717-17740820:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | 0.0 |
— | — | — | — | — | 0.0 |
— | — | — | — |
chr7 | 17806656 | 17813125 | chr7:17806656-17813125:+:L1PA7:REF | L1PA7 | REF | full-length | SNX13 | — | — | — | — | 0.84 |
— | — | — | — | 0.99 |
0.58 |
— |
chr7 | 18985072 | 18991069 | chr7:18985072-18991069:-:L1PA3:REF | L1PA3 | REF | full-length | HDAC9 | 0.03 |
0.66 |
0.9 |
0.72 |
0.86 |
0.99 |
0.71 |
0.99 |
0.95 |
0.95 |
0.98 |
0.98 |
chr7 | 19034234 | 19040386 | chr7:19034234-19040386:-:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.01 |
— |
chr7 | 19189041 | 19195047 | chr7:19189041-19195047:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | — | — | 0.31 |
— | — | — | — | 0.91 |
0.68 |
— |
chr7 | 19877681 | 19883794 | chr7:19877681-19883794:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.9 |
0.82 |
0.85 |
0.84 |
0.76 |
0.41 |
0.71 |
0.97 |
0.67 |
0.83 |
0.9 |
chr7 | 19883968 | 19890109 | chr7:19883968-19890109:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.91 |
0.71 |
0.71 |
0.88 |
0.79 |
0.24 |
0.78 |
0.95 |
0.54 |
0.84 |
0.99 |
chr7 | 20067809 | 20073950 | chr7:20067809-20073950:+:L1PA3:REF | L1PA3 | REF | full-length | LOC101927668 | 0.05 |
0.95 |
0.96 |
0.93 |
0.96 |
0.96 |
0.84 |
0.94 |
0.98 |
0.92 |
0.96 |
0.99 |
chr7 | 21146237 | 21148368 | chr7:21146237-21148368:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.46 |
— |
chr7 | 22528296 | 22534331 | chr7:22528296-22534331:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.87 |
0.95 |
0.96 |
0.86 |
0.62 |
0.9 |
0.86 |
0.91 |
0.92 |
0.94 |
0.95 |
0.98 |
chr7 | 23035734 | 23039855 | chr7:23035734-23039855:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.45 |
0.79 |
0.96 |
0.73 |
0.22 |
0.9 |
0.93 |
0.9 |
0.9 |
— | 0.94 |
0.97 |
chr7 | 23321058 | 23327074 | chr7:23321058-23327074:+:L1PA3:REF | L1PA3 | REF | full-length | IGF2BP3 | 0.84 |
0.48 |
0.98 |
0.87 |
0.93 |
0.83 |
0.92 |
0.99 |
0.99 |
0.98 |
0.98 |
0.97 |
chr7 | 23773778 | 23780292 | chr7:23773778-23780292:-:L1PA6:REF | L1PA6 | REF | full-length | STK31 | — | — | 0.83 |
0.67 |
0.9 |
— | 0.37 |
— | — | 0.85 |
0.85 |
1.0 |
chr7 | 23822602 | 23828742 | chr7:23822602-23828742:-:L1PA4:REF | L1PA4 | REF | full-length | STK31 | 0.62 |
0.6 |
0.79 |
0.77 |
0.76 |
0.71 |
0.64 |
0.79 |
0.86 |
0.74 |
0.7 |
0.83 |
chr7 | 23844558 | 23847393 | chr7:23844558-23847393:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.05 |
0.13 |
0.82 |
0.88 |
0.9 |
0.48 |
0.13 |
0.6 |
0.94 |
0.69 |
0.65 |
0.94 |
chr7 | 23947171 | 23953317 | chr7:23947171-23953317:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.09 |
0.48 |
0.64 |
0.98 |
0.91 |
0.78 |
0.69 |
0.7 |
0.97 |
0.61 |
0.77 |
0.96 |
chr7 | 24116922 | 24118569 | chr7:24116922-24118569:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
0.14 |
0.82 |
0.95 |
0.94 |
0.48 |
0.56 |
0.57 |
0.86 |
0.79 |
0.92 |
0.94 |
chr7 | 25000000 | 25002413 | chr7:25000000-25002413:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | — | — | — | 0.31 |
— | — | — | — | — | 0.32 |
— |
chr7 | 25041860 | 25047891 | chr7:25041860-25047891:-:L1HS:REF | L1HS | REF | full-length | — | 0.27 |
0.96 |
0.97 |
0.92 |
0.04 |
0.93 |
0.92 |
0.96 |
0.86 |
0.49 |
0.98 |
0.98 |
chr7 | 25603033 | 25609049 | chr7:25603033-25609049:+:L1PA2:REF | L1PA2 | REF | full-length | LOC646588 | 0.15 |
0.03 |
0.04 |
0.79 |
0.1 |
0.4 |
0.02 |
0.49 |
0.07 |
0.01 |
0.24 |
0.93 |
chr7 | 25743832 | 25749863 | chr7:25743832-25749863:+:L1PA2:REF | L1PA2 | REF | full-length | LOC646588 | 0.15 |
— | 0.9 |
0.76 |
0.08 |
0.89 |
0.88 |
0.86 |
0.91 |
— | — | 0.95 |
chr7 | 26764849 | 26770911 | chr7:26764849-26770911:-:L1P3:REF | L1P3 | REF | full-length | SKAP2 | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr7 | 27002445 | 27008595 | chr7:27002445-27008595:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.95 |
0.88 |
0.87 |
0.89 |
0.63 |
0.65 |
0.72 |
0.88 |
— | 0.66 |
0.98 |
chr7 | 27502208 | 27508199 | chr7:27502208-27508199:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.49 |
0.88 |
0.95 |
0.92 |
0.8 |
0.97 |
0.92 |
0.9 |
0.89 |
0.92 |
0.94 |
0.98 |
chr7 | 29579936 | 29585963 | chr7:29579936-29585963:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.25 |
0.97 |
0.84 |
0.86 |
0.49 |
0.82 |
0.86 |
0.8 |
0.92 |
0.8 |
0.81 |
0.91 |
chr7 | 30414475 | 30420503 | chr7:30414475-30420503:-:L1PA2:REF | L1PA2 | REF | full-length | NOD1 | 0.7 |
0.2 |
0.98 |
0.97 |
0.4 |
0.96 |
0.96 |
0.95 |
0.86 |
0.98 |
0.96 |
0.98 |