Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6 | 133155143 | 133155561 | chr6:133155143-133155561:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | 0.92 |
— | — | — | — | — | — | — | 0.9 |
— |
chr6 | 135765469 | 135771509 | chr6:135765469-135771509:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.66 |
0.89 |
0.83 |
0.64 |
0.88 |
0.74 |
0.98 |
0.92 |
0.94 |
0.92 |
0.52 |
chr6 | 139084431 | 139090562 | chr6:139084431-139090562:-:L1PA6:REF | L1PA6 | REF | full-length | — | — | 0.78 |
— | — | — | — | 0.04 |
— | — | 0.56 |
0.72 |
— |
chr6 | 139210497 | 139216630 | chr6:139210497-139216630:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.97 |
0.9 |
0.91 |
0.93 |
0.94 |
0.66 |
0.87 |
0.92 |
0.89 |
0.96 |
0.98 |
chr6 | 140114725 | 140120893 | chr6:140114725-140120893:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | 0.82 |
— | 0.03 |
— | — | 0.67 |
0.96 |
0.98 |
chr6 | 141566105 | 141572136 | chr6:141566105-141572136:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.96 |
0.95 |
0.93 |
0.8 |
0.97 |
0.88 |
0.93 |
0.98 |
0.96 |
0.98 |
0.98 |
chr6 | 141746025 | 141752036 | chr6:141746025-141752036:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.33 |
0.94 |
0.89 |
0.9 |
0.45 |
0.89 |
0.92 |
0.96 |
0.97 |
0.8 |
0.97 |
0.98 |
chr6 | 141814814 | 141820842 | chr6:141814814-141820842:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.22 |
0.86 |
0.73 |
0.76 |
0.25 |
0.85 |
0.28 |
0.92 |
0.92 |
0.51 |
0.92 |
0.95 |
chr6 | 141916863 | 141922880 | chr6:141916863-141922880:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.37 |
0.9 |
0.76 |
— | 0.76 |
0.79 |
0.75 |
— | — | 0.73 |
0.98 |
0.9 |
chr6 | 141969527 | 141975701 | chr6:141969527-141975701:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.5 |
0.77 |
0.84 |
0.19 |
0.81 |
0.88 |
0.73 |
0.95 |
0.96 |
0.21 |
0.97 |
0.96 |
chr6 | 142128962 | 142128964 | chr6:142128962-142128964:-:L1HS:NONREF | L1HS | KNR | — | NMBR | 0.01 |
0.92 |
0.54 |
— | 0.08 |
0.77 |
— | 0.85 |
— | 0.01 |
0.91 |
0.98 |
chr6 | 142577013 | 142583172 | chr6:142577013-142583172:+:L1PA3:REF | L1PA3 | REF | full-length | LOC153910 | 0.01 |
0.87 |
0.87 |
0.53 |
0.91 |
0.8 |
0.71 |
0.87 |
0.95 |
— | 0.9 |
0.98 |
chr6 | 142979399 | 142983546 | chr6:142979399-142983546:-:L1P2:REF | L1P2 | REF | 3prime-truncated | LINC01277 | 0.01 |
— | 0.63 |
0.04 |
0.9 |
0.51 |
0.09 |
0.65 |
0.93 |
0.46 |
0.62 |
0.87 |
chr6 | 142993745 | 142997870 | chr6:142993745-142997870:+:L1P2:REF | L1P2 | REF | 3prime-truncated | LINC01277 | 0.06 |
0.92 |
0.95 |
0.57 |
0.9 |
0.9 |
0.7 |
0.91 |
0.95 |
0.93 |
0.92 |
0.98 |
chr6 | 143302225 | 143308357 | chr6:143302225-143308357:-:L1PA3:REF | L1PA3 | REF | full-length | AIG1 | 0.61 |
0.76 |
0.96 |
0.85 |
0.94 |
0.87 |
0.85 |
0.87 |
0.87 |
0.94 |
0.94 |
0.88 |
chr6 | 144041197 | 144047335 | chr6:144041197-144047335:-:L1PA6:REF | L1PA6 | REF | full-length | PLAGL1 | 0.06 |
0.93 |
0.76 |
0.1 |
0.92 |
0.62 |
0.23 |
0.58 |
0.92 |
0.61 |
0.66 |
0.85 |
chr6 | 145663247 | 145663496 | chr6:145663247-145663496:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | EPM2A | 0.01 |
0.96 |
0.95 |
0.74 |
0.96 |
0.96 |
0.95 |
0.97 |
0.97 |
0.75 |
0.97 |
0.99 |
chr6 | 145673301 | 145679421 | chr6:145673301-145679421:+:L1PA6:REF | L1PA6 | REF | full-length | EPM2A | 0.02 |
0.98 |
0.96 |
0.93 |
0.84 |
0.95 |
0.96 |
0.99 |
0.99 |
0.91 |
0.96 |
0.97 |
chr6 | 147842450 | 147842453 | chr6:147842450-147842453:+:L1HS:NONREF | L1HS | KNR | — | — | 0.87 |
— | 0.96 |
— | — | — | — | — | — | — | — | 0.98 |
chr6 | 148858497 | 148864630 | chr6:148858497-148864630:-:L1PA5:REF | L1PA5 | REF | full-length | UST | 0.02 |
0.96 |
0.97 |
0.66 |
0.72 |
0.97 |
0.83 |
0.94 |
0.93 |
0.95 |
0.93 |
0.99 |
chr6 | 152028158 | 152034290 | chr6:152028158-152034290:+:L1PA5:REF | L1PA5 | REF | full-length | ESR1 | 0.02 |
0.98 |
0.89 |
0.72 |
0.92 |
0.71 |
0.73 |
0.84 |
0.81 |
0.39 |
0.74 |
0.85 |
chr6 | 152078502 | 152083797 | chr6:152078502-152083797:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | ESR1 | — | — | — | — | — | 0.57 |
0.09 |
— | — | 0.41 |
0.58 |
0.79 |
chr6 | 152608998 | 152615129 | chr6:152608998-152615129:+:L1PA6:REF | L1PA6 | REF | full-length | SYNE1 | 0.03 |
0.17 |
0.88 |
0.91 |
0.86 |
0.93 |
0.21 |
0.96 |
0.9 |
0.6 |
0.89 |
0.92 |
chr6 | 152712429 | 152712656 | chr6:152712429-152712656:-:L1HS:REF | L1HS | REF | 3prime-truncated | MYCT1 | — | 0.93 |
— | — | 0.94 |
0.86 |
0.57 |
0.96 |
— | — | 0.94 |
— |
chr6 | 156034135 | 156040165 | chr6:156034135-156040165:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.75 |
0.69 |
0.43 |
0.87 |
0.76 |
0.76 |
0.82 |
0.95 |
0.77 |
0.86 |
0.74 |
chr6 | 156324980 | 156331010 | chr6:156324980-156331010:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.93 |
0.92 |
0.72 |
0.28 |
0.87 |
0.8 |
0.85 |
0.96 |
0.92 |
0.84 |
0.92 |
chr6 | 156361254 | 156367276 | chr6:156361254-156367276:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.81 |
0.78 |
0.63 |
0.86 |
0.79 |
0.76 |
0.81 |
0.92 |
0.91 |
0.82 |
0.84 |
chr6 | 157547703 | 157547705 | chr6:157547703-157547705:-:L1HS:NONREF | L1HS | KNR | — | ZDHHC14 | 0.96 |
0.96 |
— | 0.96 |
0.17 |
0.96 |
0.98 |
0.94 |
0.9 |
— | 0.93 |
0.98 |
chr6 | 158178477 | 158184036 | chr6:158178477-158184036:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | GTF2H5 | 0.83 |
0.85 |
0.93 |
0.97 |
0.93 |
0.97 |
0.66 |
0.99 |
0.96 |
0.84 |
0.98 |
0.97 |
chr6 | 159670614 | 159676755 | chr6:159670614-159676755:+:L1PA5:REF | L1PA5 | REF | full-length | SOD2 | 0.93 |
0.97 |
0.94 |
0.98 |
0.83 |
0.97 |
0.97 |
0.96 |
0.97 |
0.93 |
0.8 |
0.97 |
chr6 | 160564531 | 160570646 | chr6:160564531-160570646:+:L1PA5:REF | L1PA5 | REF | full-length | LPA | 0.02 |
0.06 |
0.57 |
— | 0.84 |
0.39 |
0.28 |
0.49 |
0.81 |
0.06 |
0.45 |
— |
chr6 | 160570644 | 160572338 | chr6:160570644-160572338:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | LPA | — | — | 0.69 |
— | — | 0.82 |
— | — | — | — | 0.79 |
— |
chr6 | 160679719 | 160685751 | chr6:160679719-160685751:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.15 |
0.04 |
0.89 |
0.34 |
0.14 |
0.76 |
0.91 |
0.77 |
0.92 |
0.65 |
0.78 |
0.89 |
chr6 | 162838592 | 162844620 | chr6:162838592-162844620:-:L1PA2:REF | L1PA2 | REF | full-length | PACRG | 0.02 |
0.92 |
0.97 |
0.8 |
0.85 |
0.91 |
0.89 |
0.84 |
0.98 |
0.97 |
0.89 |
0.97 |
chr6 | 162989737 | 162995762 | chr6:162989737-162995762:-:L1PA2:REF | L1PA2 | REF | full-length | PACRG | 0.01 |
0.93 |
0.94 |
0.47 |
0.68 |
0.91 |
0.87 |
0.85 |
0.96 |
0.93 |
0.92 |
0.98 |
chr6 | 164702727 | 164708899 | chr6:164702727-164708899:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.03 |
0.62 |
0.2 |
0.82 |
0.53 |
0.17 |
0.48 |
0.89 |
0.03 |
0.63 |
0.31 |
chr6 | 164781960 | 164787983 | chr6:164781960-164787983:-:L1PA2:REF | L1PA2 | REF | full-length | MEAT6 | 0.02 |
0.02 |
0.81 |
0.21 |
0.46 |
0.58 |
0.54 |
0.67 |
0.91 |
0.25 |
0.66 |
0.7 |
chr6 | 166788874 | 166795015 | chr6:166788874-166795015:+:L1PA4:REF | L1PA4 | REF | full-length | RPS6KA2 | 0.44 |
0.02 |
0.92 |
0.53 |
0.92 |
0.83 |
0.88 |
0.89 |
0.97 |
0.79 |
0.89 |
0.94 |
chr6 | 166884811 | 166890997 | chr6:166884811-166890997:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.48 |
— | 0.92 |
0.81 |
0.89 |
0.81 |
0.96 |
0.78 |
0.92 |
0.89 |
0.76 |
0.93 |
chr7 | 2743552 | 2749674 | chr7:2743552-2749674:+:L1PA4:REF | L1PA4 | REF | full-length | AMZ1 | 0.89 |
0.9 |
0.99 |
0.98 |
0.86 |
0.94 |
0.93 |
0.96 |
0.94 |
0.92 |
0.93 |
0.98 |
chr7 | 3121545 | 3127690 | chr7:3121545-3127690:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.89 |
0.89 |
0.77 |
0.82 |
0.76 |
0.82 |
0.85 |
0.87 |
0.76 |
0.78 |
0.87 |
chr7 | 7465092 | 7471120 | chr7:7465092-7471120:+:L1HS:REF | L1HS | REF | full-length | COL28A1 | 0.33 |
0.96 |
0.94 |
0.93 |
0.05 |
0.96 |
0.91 |
0.92 |
0.96 |
0.9 |
0.97 |
0.92 |
chr7 | 7656316 | 7662777 | chr7:7656316-7662777:-:L1PA7:REF | L1PA7 | REF | full-length | RPA3 | — | — | — | — | — | — | — | — | — | — | 0.74 |
— |
chr7 | 7979395 | 7979397 | chr7:7979395-7979397:+:L1HS:NONREF | L1HS | KNR | — | GLCCI1 | — | — | 0.84 |
— | — | — | — | — | — | — | — | — |
chr7 | 8239428 | 8245573 | chr7:8239428-8245573:+:L1PA6:REF | L1PA6 | REF | full-length | ICA1 | 0.86 |
0.7 |
— | 0.67 |
— | 0.58 |
0.37 |
0.56 |
— | — | 0.67 |
— |
chr7 | 8298113 | 8304140 | chr7:8298113-8304140:-:L1PA3:REF | L1PA3 | REF | full-length | LOC100505938 | 0.01 |
0.76 |
0.97 |
0.85 |
0.04 |
0.82 |
0.9 |
0.78 |
0.91 |
0.01 |
0.77 |
0.0 |
chr7 | 8351723 | 8353975 | chr7:8351723-8353975:+:L1HS:REF | L1HS | REF | 3prime-truncated | LOC100505938 | 0.32 |
0.02 |
0.86 |
0.77 |
0.04 |
0.77 |
0.85 |
0.75 |
0.94 |
0.95 |
0.79 |
0.98 |
chr7 | 8726340 | 8732368 | chr7:8726340-8732368:-:L1PA3:REF | L1PA3 | REF | full-length | NXPH1 | 0.82 |
0.82 |
0.78 |
0.86 |
0.9 |
0.74 |
0.7 |
0.82 |
0.93 |
0.68 |
0.78 |
0.99 |
chr7 | 8847084 | 8847086 | chr7:8847084-8847086:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.8 |
— | — | 0.78 |
— | 0.85 |
— | 0.58 |
0.85 |
— |
chr7 | 9163396 | 9169854 | chr7:9163396-9169854:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |