Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr13 | 48465555 | 48471566 | chr13:48465555-48471566:+:L1HS:REF | L1HS | REF | full-length | RB1 | 0.97 |
0.98 |
0.98 |
0.99 |
0.48 |
0.99 |
0.98 |
0.97 |
0.96 |
0.98 |
0.99 |
0.98 |
chr13 | 48673458 | 48676111 | chr13:48673458-48676111:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | CYSLTR2 | — | — | — | — | — | — | — | — | — | — | 0.46 |
— |
chr13 | 49152513 | 49158535 | chr13:49152513-49158535:-:L1PA2:REF | L1PA2 | REF | full-length | FNDC3A | 0.87 |
0.91 |
0.94 |
0.98 |
0.78 |
0.95 |
0.91 |
0.91 |
0.85 |
0.94 |
0.92 |
0.91 |
chr13 | 49879091 | 49880687 | chr13:49879091-49880687:+:L1PA8:REF | L1PA8 | REF | 3prime-truncated | CTAGE10P | — | — | 0.02 |
— | — | 0.0 |
0.01 |
0.03 |
— | 0.0 |
0.04 |
0.07 |
chr13 | 50180295 | 50186330 | chr13:50180295-50186330:-:L1PA2:REF | L1PA2 | REF | full-length | DLEU1 | 0.0 |
0.01 |
0.98 |
0.93 |
0.19 |
0.93 |
0.01 |
0.96 |
0.78 |
0.01 |
0.98 |
0.02 |
chr13 | 50503044 | 50509169 | chr13:50503044-50509169:-:L1PA4:REF | L1PA4 | REF | full-length | DLEU1 | — | 0.97 |
0.95 |
— | 1.0 |
— | — | 0.98 |
— | 0.96 |
0.98 |
— |
chr13 | 50768288 | 50774405 | chr13:50768288-50774405:-:L1PA6:REF | L1PA6 | REF | full-length | DLEU7 | — | — | — | — | — | — | — | — | — | — | 0.25 |
— |
chr13 | 50982054 | 50988070 | chr13:50982054-50988070:+:L1PA2:REF | L1PA2 | REF | full-length | GUCY1B2 | 0.82 |
0.92 |
0.97 |
0.87 |
0.15 |
0.91 |
0.91 |
0.85 |
0.85 |
0.94 |
0.95 |
0.97 |
chr13 | 51078923 | 51080846 | chr13:51078923-51080846:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | C13orf42 | — | 0.13 |
0.81 |
— | 0.39 |
0.82 |
0.67 |
0.8 |
— | 0.34 |
0.84 |
0.2 |
chr13 | 51509717 | 51515838 | chr13:51509717-51515838:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.63 |
0.41 |
0.96 |
0.8 |
0.91 |
0.82 |
0.89 |
0.97 |
0.97 |
0.89 |
0.95 |
0.97 |
chr13 | 51690196 | 51696329 | chr13:51690196-51696329:-:L1PA3:REF | L1PA3 | REF | full-length | WDFY2 | 0.87 |
0.21 |
0.98 |
0.88 |
0.93 |
0.99 |
0.97 |
0.99 |
0.99 |
0.94 |
0.97 |
0.93 |
chr13 | 52254319 | 52258039 | chr13:52254319-52258039:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.73 |
0.92 |
0.96 |
0.79 |
0.93 |
0.85 |
0.94 |
0.88 |
0.96 |
0.93 |
0.85 |
0.98 |
chr13 | 52269640 | 52275659 | chr13:52269640-52275659:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.79 |
0.97 |
0.95 |
0.86 |
0.13 |
0.86 |
0.89 |
0.89 |
0.54 |
0.92 |
0.9 |
0.98 |
chr13 | 52548432 | 52552151 | chr13:52548432-52552151:-:L1P1:REF | L1P1 | REF | 3prime-truncated | TPTE2P3 | 0.78 |
0.16 |
0.97 |
0.93 |
0.93 |
0.87 |
0.91 |
0.92 |
0.97 |
0.95 |
0.88 |
0.98 |
chr13 | 54218991 | 54225025 | chr13:54218991-54225025:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
— | 0.87 |
0.36 |
— | 0.74 |
0.78 |
0.88 |
— | 0.94 |
0.74 |
0.88 |
chr13 | 54572234 | 54573121 | chr13:54572234-54573121:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.06 |
0.7 |
0.88 |
0.68 |
0.4 |
0.68 |
0.79 |
0.83 |
0.26 |
0.18 |
0.83 |
0.76 |
chr13 | 55272543 | 55278710 | chr13:55272543-55278710:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
— | 0.17 |
0.04 |
0.73 |
0.2 |
0.02 |
0.22 |
— | 0.58 |
0.13 |
0.01 |
chr13 | 56762844 | 56769351 | chr13:56762844-56769351:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.05 |
0.5 |
0.11 |
0.04 |
0.79 |
0.27 |
0.07 |
0.27 |
0.84 |
0.26 |
0.22 |
0.05 |
chr13 | 57229644 | 57236064 | chr13:57229644-57236064:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.26 |
0.33 |
0.0 |
0.78 |
0.26 |
0.0 |
0.11 |
0.87 |
0.54 |
0.08 |
0.13 |
chr13 | 58350399 | 58352698 | chr13:58350399-58352698:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.96 |
0.87 |
0.4 |
0.91 |
0.71 |
0.78 |
0.86 |
0.96 |
0.94 |
0.71 |
0.84 |
chr13 | 58672617 | 58678643 | chr13:58672617-58678643:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.96 |
0.87 |
0.84 |
0.6 |
0.8 |
0.77 |
0.87 |
0.96 |
0.92 |
0.86 |
0.87 |
chr13 | 60245895 | 60252051 | chr13:60245895-60252051:-:L1PA3:REF | L1PA3 | REF | full-length | LINC00434 | — | — | 0.82 |
— | 0.81 |
0.8 |
0.81 |
— | — | 0.84 |
0.81 |
0.91 |
chr13 | 60709752 | 60715784 | chr13:60709752-60715784:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.33 |
0.73 |
0.16 |
0.76 |
0.49 |
0.46 |
0.53 |
0.92 |
0.8 |
0.57 |
0.37 |
chr13 | 60888196 | 60888202 | chr13:60888196-60888202:-:L1HS:NONREF | L1HS | KNR | — | — | 0.04 |
0.73 |
0.9 |
— | 0.07 |
— | 0.89 |
— | 0.92 |
0.92 |
0.84 |
0.98 |
chr13 | 61627110 | 61629440 | chr13:61627110-61629440:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | 0.68 |
0.14 |
— | 0.43 |
0.54 |
0.52 |
— | — | 0.56 |
— |
chr13 | 64211031 | 64217178 | chr13:64211031-64217178:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.05 |
0.61 |
0.4 |
0.32 |
0.85 |
0.44 |
0.07 |
0.7 |
0.67 |
— | 0.82 |
0.95 |
chr13 | 66253762 | 66259788 | chr13:66253762-66259788:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.33 |
0.96 |
0.96 |
0.89 |
0.94 |
0.9 |
0.77 |
0.93 |
0.98 |
0.96 |
0.97 |
0.97 |
chr13 | 66737482 | 66743507 | chr13:66737482-66743507:+:L1PA2:REF | L1PA2 | REF | full-length | PCDH9 | — | — | 0.96 |
0.95 |
0.67 |
0.84 |
0.87 |
0.91 |
— | 0.96 |
0.97 |
0.96 |
chr13 | 67452274 | 67456207 | chr13:67452274-67456207:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.16 |
0.82 |
0.77 |
0.26 |
0.8 |
0.13 |
0.05 |
0.52 |
0.85 |
0.82 |
0.48 |
0.92 |
chr13 | 67685594 | 67686288 | chr13:67685594-67686288:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.33 |
0.98 |
0.91 |
0.8 |
0.14 |
0.81 |
0.82 |
0.91 |
0.94 |
0.96 |
0.91 |
0.98 |
chr13 | 69477866 | 69483990 | chr13:69477866-69483990:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
— | 0.4 |
0.28 |
— | 0.33 |
0.15 |
0.69 |
— | 0.57 |
0.41 |
— |
chr13 | 69782179 | 69784882 | chr13:69782179-69784882:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | KLHL1 | 0.09 |
0.77 |
0.75 |
0.36 |
0.9 |
0.64 |
0.68 |
0.71 |
0.96 |
0.92 |
0.77 |
0.9 |
chr13 | 71384560 | 71390704 | chr13:71384560-71390704:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.01 |
0.93 |
0.35 |
0.91 |
— | 0.23 |
0.85 |
0.96 |
0.89 |
0.94 |
0.98 |
chr13 | 72265482 | 72271624 | chr13:72265482-72271624:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.78 |
0.75 |
— | — | 0.72 |
0.9 |
0.71 |
0.96 |
0.91 |
— | 0.89 |
chr13 | 72610246 | 72616287 | chr13:72610246-72616287:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.64 |
0.91 |
0.51 |
0.44 |
0.77 |
0.72 |
0.84 |
0.96 |
0.97 |
0.85 |
0.88 |
chr13 | 73640527 | 73646551 | chr13:73640527-73646551:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | — | 0.96 |
— | — | 0.87 |
— | 0.87 |
0.87 |
0.94 |
0.95 |
chr13 | 74039068 | 74039070 | chr13:74039068-74039070:-:L1HS:NONREF | L1HS | KNR | — | KLF12 | — | — | — | — | — | — | 0.95 |
— | — | — | — | — |
chr13 | 74235944 | 74241970 | chr13:74235944-74241970:-:L1PA3:REF | L1PA3 | REF | full-length | LINC00402 | 0.02 |
0.95 |
0.98 |
0.72 |
0.2 |
0.94 |
0.93 |
0.98 |
0.99 |
0.98 |
0.99 |
0.98 |
chr13 | 74426326 | 74432354 | chr13:74426326-74432354:+:L1HS:REF | L1HS | REF | full-length | LINC00381 | 0.01 |
0.93 |
0.89 |
0.8 |
0.42 |
0.8 |
0.8 |
0.9 |
0.9 |
0.88 |
0.93 |
0.86 |
chr13 | 74536448 | 74542369 | chr13:74536448-74542369:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.79 |
0.78 |
0.65 |
0.83 |
0.73 |
0.64 |
0.82 |
0.89 |
0.82 |
0.82 |
0.82 |
chr13 | 75241169 | 75247314 | chr13:75241169-75247314:-:L1PA4:REF | L1PA4 | REF | full-length | LINC01078 | 0.07 |
0.88 |
0.89 |
0.48 |
0.89 |
0.76 |
0.62 |
0.93 |
0.93 |
0.81 |
0.91 |
0.9 |
chr13 | 75727624 | 75733777 | chr13:75727624-75733777:-:L1PA3:REF | L1PA3 | REF | full-length | LMO7 | 0.28 |
0.96 |
0.98 |
0.96 |
0.82 |
0.99 |
0.94 |
0.98 |
0.96 |
0.95 |
0.98 |
0.97 |
chr13 | 76242877 | 76243950 | chr13:76242877-76243950:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.09 |
0.6 |
0.28 |
0.84 |
0.75 |
0.45 |
0.9 |
0.93 |
— | 0.95 |
0.76 |
chr13 | 76342318 | 76344149 | chr13:76342318-76344149:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.0 |
0.19 |
0.68 |
0.22 |
0.86 |
0.68 |
0.21 |
0.82 |
0.92 |
0.7 |
0.93 |
0.72 |
chr13 | 76612823 | 76618851 | chr13:76612823-76618851:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.59 |
0.89 |
0.72 |
0.22 |
0.87 |
0.76 |
0.93 |
0.95 |
0.93 |
0.91 |
0.82 |
chr13 | 77199027 | 77205061 | chr13:77199027-77205061:+:L1PA3:REF | L1PA3 | REF | full-length | MYCBP2 | 0.97 |
0.78 |
0.98 |
0.98 |
0.95 |
0.98 |
0.97 |
0.95 |
0.97 |
0.97 |
0.98 |
0.98 |
chr13 | 78513206 | 78519393 | chr13:78513206-78519393:-:L1PA3:REF | L1PA3 | REF | full-length | RNF219-AS1 | 0.1 |
0.57 |
0.72 |
0.37 |
0.89 |
0.75 |
0.79 |
0.75 |
0.86 |
0.88 |
0.8 |
0.84 |
chr13 | 78526071 | 78532199 | chr13:78526071-78532199:+:L1PA5:REF | L1PA5 | REF | full-length | RNF219-AS1 | — | — | 0.49 |
0.07 |
0.84 |
0.28 |
0.03 |
0.35 |
0.9 |
0.79 |
0.19 |
0.22 |
chr13 | 78865884 | 78867218 | chr13:78865884-78867218:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.0 |
0.29 |
0.01 |
0.75 |
0.24 |
0.34 |
0.33 |
0.77 |
0.88 |
0.21 |
0.06 |
chr13 | 79817055 | 79823218 | chr13:79817055-79823218:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.84 |
0.93 |
0.79 |
0.83 |
0.91 |
0.69 |
0.9 |
0.9 |
0.9 |
0.97 |
0.93 |