Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr13 | 19103712 | 19109724 | chr13:19103712-19109724:-:L1PA2:REF | L1PA2 | REF | full-length | LOC107984132 | 0.06 |
0.54 |
0.79 |
0.58 |
0.05 |
0.52 |
0.01 |
0.58 |
0.92 |
0.23 |
0.61 |
0.84 |
chr13 | 19212824 | 19216873 | chr13:19212824-19216873:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | 0.74 |
0.67 |
— | 0.79 |
0.54 |
0.3 |
0.61 |
— | — | 0.62 |
0.67 |
chr13 | 19272995 | 19279012 | chr13:19272995-19279012:+:L1PA2:REF | L1PA2 | REF | full-length | ANKRD26P3 | 0.01 |
0.27 |
0.35 |
0.7 |
0.34 |
0.35 |
0.33 |
0.42 |
0.44 |
— | 0.35 |
0.42 |
chr13 | 19496786 | 19500000 | chr13:19496786-19500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | TPTE2 | 0.12 |
0.64 |
0.82 |
0.74 |
0.11 |
0.7 |
0.73 |
0.86 |
0.76 |
0.61 |
0.78 |
0.84 |
chr13 | 19611546 | 19617890 | chr13:19611546-19617890:-:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | — | 0.88 |
— | — | — | — | — | 0.82 |
— |
chr13 | 21855728 | 21861909 | chr13:21855728-21861909:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.55 |
0.91 |
0.38 |
0.89 |
0.64 |
0.2 |
0.76 |
0.95 |
0.84 |
0.8 |
0.91 |
chr13 | 22313827 | 22316900 | chr13:22313827-22316900:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.01 |
0.24 |
0.55 |
0.05 |
0.82 |
0.37 |
0.02 |
0.42 |
0.85 |
0.41 |
0.41 |
0.9 |
chr13 | 22574736 | 22580850 | chr13:22574736-22580850:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.79 |
0.95 |
0.67 |
0.42 |
0.82 |
0.77 |
0.86 |
0.95 |
0.91 |
0.83 |
0.98 |
chr13 | 23282871 | 23286072 | chr13:23282871-23286072:-:L1P3:REF | L1P3 | REF | 3prime-truncated | SGCG | — | — | 0.42 |
— | 0.67 |
— | 0.05 |
0.35 |
— | 0.35 |
0.39 |
0.57 |
chr13 | 24806647 | 24812668 | chr13:24806647-24812668:-:L1PA3:REF | L1PA3 | REF | full-length | RNF17 | — | 0.15 |
0.98 |
— | 0.69 |
0.81 |
0.73 |
0.79 |
0.98 |
0.98 |
0.84 |
0.96 |
chr13 | 25893048 | 25899177 | chr13:25893048-25899177:-:L1PA4:REF | L1PA4 | REF | full-length | ATP8A2 | 0.01 |
— | 0.77 |
0.39 |
— | 0.7 |
— | — | 0.99 |
0.76 |
— | 0.79 |
chr13 | 26102953 | 26103848 | chr13:26102953-26103848:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | 0.65 |
0.82 |
0.05 |
0.89 |
0.42 |
0.25 |
0.71 |
— | 0.46 |
0.66 |
0.04 |
chr13 | 27125486 | 27126431 | chr13:27125486-27126431:+:L1P2:REF | L1P2 | REF | 3prime-truncated | USP12 | 0.0 |
— | — | — | 0.84 |
0.98 |
0.95 |
— | — | 0.02 |
0.6 |
0.99 |
chr13 | 28688077 | 28694338 | chr13:28688077-28694338:-:L1PA7:REF | L1PA7 | REF | full-length | SLC46A3 | 0.06 |
0.19 |
— | 0.6 |
0.2 |
0.7 |
0.03 |
0.85 |
— | 0.5 |
0.93 |
0.96 |
chr13 | 28775212 | 28777334 | chr13:28775212-28777334:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.73 |
— |
chr13 | 29214185 | 29216814 | chr13:29214185-29216814:-:L1P3:REF | L1P3 | REF | 3prime-truncated | MTUS2 | — | 0.32 |
0.86 |
0.0 |
0.89 |
0.48 |
0.01 |
0.23 |
— | 0.3 |
0.49 |
0.42 |
chr13 | 29641706 | 29647706 | chr13:29641706-29647706:-:L1HS:REF | L1HS | REF | full-length | LOC102723345 | — | 0.01 |
— | 0.75 |
0.06 |
— | 0.03 |
0.56 |
0.1 |
— | — | 0.97 |
chr13 | 30259358 | 30265382 | chr13:30259358-30265382:+:L1PA3:REF | L1PA3 | REF | full-length | KATNAL1 | — | — | — | 0.85 |
— | — | — | — | — | — | — | — |
chr13 | 31302314 | 31308370 | chr13:31302314-31308370:+:L1HS:REF | L1HS | REF | full-length | B3GLCT | 0.7 |
0.9 |
0.91 |
0.89 |
0.66 |
0.9 |
0.92 |
0.89 |
0.91 |
0.89 |
0.91 |
0.91 |
chr13 | 32602092 | 32608174 | chr13:32602092-32608174:-:L1PA5:REF | L1PA5 | REF | full-length | PDS5B | — | — | — | — | — | — | — | — | — | — | 0.5 |
— |
chr13 | 33417969 | 33424106 | chr13:33417969-33424106:+:L1PA6:REF | L1PA6 | REF | full-length | STARD13 | 0.0 |
0.92 |
0.95 |
0.68 |
0.94 |
0.82 |
0.93 |
0.87 |
0.99 |
0.86 |
0.98 |
0.98 |
chr13 | 33984674 | 33990692 | chr13:33984674-33990692:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.97 |
0.97 |
0.95 |
0.91 |
0.95 |
0.98 |
0.85 |
0.96 |
0.9 |
0.92 |
0.99 |
chr13 | 34054229 | 34055239 | chr13:34054229-34055239:-:L1PA8:REF | L1PA8 | REF | 3prime-truncated | — | — | — | 0.94 |
— | — | — | — | — | — | — | 0.85 |
— |
chr13 | 34480262 | 34486294 | chr13:34480262-34486294:-:L1HS:REF | L1HS | REF | full-length | LINC02343 | 0.01 |
0.97 |
0.96 |
0.91 |
0.4 |
0.92 |
0.87 |
0.89 |
0.96 |
0.96 |
0.94 |
0.97 |
chr13 | 35213627 | 35213629 | chr13:35213627-35213629:-:L1HS:NONREF | L1HS | KNR | — | NBEA | — | — | — | — | — | — | — | — | — | — | 0.93 |
— |
chr13 | 35422150 | 35428282 | chr13:35422150-35428282:-:L1PA4:REF | L1PA4 | REF | full-length | NBEA | 0.02 |
0.96 |
0.96 |
0.85 |
0.8 |
0.92 |
0.71 |
0.84 |
0.89 |
0.93 |
0.86 |
0.92 |
chr13 | 36008229 | 36014237 | chr13:36008229-36014237:-:L1PA2:REF | L1PA2 | REF | full-length | DCLK1 | — | 0.93 |
0.93 |
0.76 |
0.23 |
0.86 |
0.79 |
0.84 |
0.91 |
0.95 |
0.85 |
0.88 |
chr13 | 37149952 | 37155982 | chr13:37149952-37155982:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.57 |
0.77 |
0.85 |
0.13 |
0.97 |
0.06 |
0.95 |
0.95 |
0.01 |
0.98 |
0.9 |
chr13 | 37250340 | 37256381 | chr13:37250340-37256381:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.87 |
0.9 |
0.73 |
0.24 |
0.94 |
0.87 |
0.91 |
0.89 |
0.88 |
0.94 |
0.88 |
chr13 | 37822274 | 37828299 | chr13:37822274-37828299:-:L1PA3:REF | L1PA3 | REF | full-length | TRPC4 | — | — | — | 0.51 |
— | 0.85 |
0.84 |
0.93 |
— | 0.8 |
0.86 |
0.63 |
chr13 | 38065372 | 38071518 | chr13:38065372-38071518:+:L1PA3:REF | L1PA3 | REF | full-length | LINC00571 | 0.07 |
0.42 |
0.88 |
0.7 |
0.91 |
0.91 |
0.82 |
0.84 |
0.96 |
0.87 |
0.84 |
0.76 |
chr13 | 38112136 | 38118185 | chr13:38112136-38118185:+:L1PA3:REF | L1PA3 | REF | full-length | LINC00571 | 0.16 |
0.82 |
0.85 |
0.79 |
0.89 |
— | 0.76 |
0.77 |
0.86 |
0.93 |
0.82 |
0.9 |
chr13 | 38837794 | 38840413 | chr13:38837794-38840413:-:L1P3:REF | L1P3 | REF | 3prime-truncated | FREM2 | — | — | — | — | — | 0.46 |
0.1 |
— | — | — | 0.52 |
0.11 |
chr13 | 39000817 | 39006875 | chr13:39000817-39006875:-:L1PA2:REF | L1PA2 | REF | full-length | PROSER1 | 0.95 |
0.96 |
0.97 |
0.97 |
0.14 |
0.96 |
0.33 |
0.97 |
0.86 |
0.94 |
0.97 |
0.98 |
chr13 | 40356290 | 40362321 | chr13:40356290-40362321:+:L1PA2:REF | L1PA2 | REF | full-length | LINC00598 | 0.03 |
0.96 |
0.97 |
0.9 |
0.65 |
0.88 |
0.92 |
0.79 |
0.8 |
0.92 |
0.71 |
0.96 |
chr13 | 40711139 | 40713316 | chr13:40711139-40713316:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.34 |
0.97 |
0.94 |
0.74 |
0.91 |
0.91 |
0.89 |
0.92 |
0.89 |
0.93 |
0.93 |
0.97 |
chr13 | 40734919 | 40740945 | chr13:40734919-40740945:+:L1PA2:REF | L1PA2 | REF | full-length | MRPS31 | 0.95 |
0.98 |
0.97 |
0.91 |
0.34 |
0.88 |
0.9 |
0.97 |
0.69 |
0.97 |
0.98 |
0.96 |
chr13 | 40828819 | 40834834 | chr13:40828819-40834834:+:L1PA2:REF | L1PA2 | REF | full-length | TPTE2P5 | 0.53 |
0.96 |
0.97 |
0.83 |
0.79 |
0.95 |
0.96 |
0.95 |
0.97 |
0.95 |
0.95 |
0.9 |
chr13 | 40864571 | 40870598 | chr13:40864571-40870598:-:L1PA3:REF | L1PA3 | REF | full-length | TPTE2P5 | 0.05 |
0.96 |
0.96 |
— | 0.55 |
0.66 |
0.71 |
— | 0.67 |
0.93 |
0.97 |
0.86 |
chr13 | 41042308 | 41048414 | chr13:41042308-41048414:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.96 |
0.99 |
0.94 |
1.0 |
0.95 |
0.98 |
0.94 |
0.96 |
0.89 |
0.91 |
0.94 |
0.92 |
chr13 | 41474356 | 41480738 | chr13:41474356-41480738:-:L1PA7:REF | L1PA7 | REF | full-length | RGCC | 0.07 |
0.98 |
0.82 |
0.57 |
0.88 |
0.83 |
0.53 |
0.88 |
0.97 |
0.78 |
0.94 |
0.96 |
chr13 | 42424880 | 42430912 | chr13:42424880-42430912:+:L1PA2:REF | L1PA2 | REF | full-length | LINC02341 | 0.07 |
0.88 |
0.91 |
0.79 |
0.21 |
0.8 |
0.82 |
0.84 |
0.87 |
0.83 |
0.83 |
0.9 |
chr13 | 43971705 | 43976214 | chr13:43971705-43976214:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.03 |
0.95 |
0.89 |
0.89 |
0.3 |
0.86 |
0.91 |
0.96 |
0.91 |
0.94 |
0.92 |
0.97 |
chr13 | 45635171 | 45641629 | chr13:45635171-45641629:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.0 |
0.88 |
0.91 |
0.33 |
0.87 |
0.57 |
0.11 |
0.41 |
0.94 |
0.67 |
0.68 |
0.96 |
chr13 | 45645030 | 45651067 | chr13:45645030-45651067:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.91 |
0.91 |
— | 0.34 |
0.84 |
0.91 |
— | — | 0.4 |
0.82 |
0.9 |
chr13 | 45664064 | 45670213 | chr13:45664064-45670213:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.54 |
0.95 |
— | 0.59 |
0.88 |
0.4 |
— | — | 0.31 |
0.81 |
0.95 |
chr13 | 47712138 | 47718308 | chr13:47712138-47718308:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.27 |
0.69 |
0.93 |
0.81 |
0.69 |
0.44 |
0.65 |
0.87 |
0.29 |
0.86 |
0.44 |
chr13 | 47734791 | 47740890 | chr13:47734791-47740890:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.04 |
0.06 |
0.75 |
0.55 |
0.54 |
0.22 |
0.42 |
0.86 |
0.03 |
0.67 |
0.08 |
chr13 | 47781888 | 47787912 | chr13:47781888-47787912:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.91 |
0.95 |
0.86 |
0.37 |
0.87 |
0.91 |
0.88 |
0.94 |
0.83 |
0.92 |
0.95 |
chr13 | 48416129 | 48422515 | chr13:48416129-48422515:+:L1PA7:REF | L1PA7 | REF | full-length | RB1 | 0.96 |
0.99 |
0.99 |
1.0 |
0.93 |
0.97 |
0.98 |
0.99 |
0.98 |
0.95 |
0.99 |
0.99 |