Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr22 | 11336963 | 11337451 | chr22:11336963-11337451:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.02 |
0.38 |
0.72 |
0.27 |
0.88 |
0.61 |
0.3 |
0.67 |
0.86 |
0.48 |
0.6 |
0.79 |
chr22 | 11341432 | 11346064 | chr22:11341432-11346064:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.09 |
— |
chr22 | 11428056 | 11433204 | chr22:11428056-11433204:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.11 |
0.24 |
0.37 |
0.63 |
0.46 |
0.06 |
0.43 |
0.72 |
0.06 |
0.44 |
0.39 |
chr22 | 11959381 | 11965528 | chr22:11959381-11965528:+:L1PA2:REF | L1PA2 | REF | full-length | LOC102723769 | 0.85 |
0.2 |
0.52 |
0.6 |
0.87 |
0.73 |
0.56 |
0.69 |
0.85 |
0.38 |
0.71 |
0.72 |
chr22 | 12388849 | 12394988 | chr22:12388849-12394988:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.39 |
0.43 |
0.06 |
0.67 |
0.23 |
0.15 |
0.17 |
0.5 |
0.26 |
0.22 |
0.29 |
chr22 | 12801330 | 12807455 | chr22:12801330-12807455:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.24 |
0.29 |
0.23 |
0.53 |
0.35 |
0.33 |
0.43 |
0.64 |
0.12 |
0.49 |
0.4 |
chr22 | 15214621 | 15220667 | chr22:15214621-15220667:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.48 |
0.72 |
0.54 |
0.13 |
0.58 |
0.6 |
0.81 |
0.86 |
0.48 |
0.65 |
0.83 |
chr22 | 16183718 | 16189738 | chr22:16183718-16189738:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.02 |
0.78 |
0.67 |
0.32 |
0.63 |
0.81 |
0.73 |
0.91 |
0.53 |
0.76 |
0.9 |
chr22 | 16235053 | 16241190 | chr22:16235053-16241190:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.03 |
0.06 |
0.2 |
0.54 |
0.25 |
0.03 |
0.39 |
0.49 |
0.03 |
0.3 |
0.23 |
chr22 | 16660386 | 16666498 | chr22:16660386-16666498:+:L1PA4:REF | L1PA4 | REF | full-length | ANKRD62P1-PARP4P3 | 0.72 |
— | 0.54 |
— | 0.97 |
— | 0.47 |
0.46 |
0.71 |
— | 0.6 |
0.85 |
chr22 | 16766368 | 16767295 | chr22:16766368-16767295:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.08 |
— | 0.46 |
— | 0.88 |
0.55 |
0.17 |
— | — | 0.17 |
0.56 |
0.91 |
chr22 | 17296834 | 17299769 | chr22:17296834-17299769:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr22 | 19223389 | 19223391 | chr22:19223389-19223391:+:L1HS:NONREF | L1HS | KNR | — | CLTCL1 | — | — | — | — | — | — | — | — | — | — | 0.96 |
— |
chr22 | 22131969 | 22131971 | chr22:22131969-22131971:-:L1HS:NONREF | L1HS | KNR | — | — | 0.37 |
0.97 |
— | — | 0.13 |
0.82 |
— | 0.92 |
— | — | 0.94 |
— |
chr22 | 22187854 | 22193971 | chr22:22187854-22193971:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.78 |
0.86 |
0.19 |
0.8 |
0.57 |
— | 0.55 |
0.81 |
0.58 |
0.67 |
0.83 |
chr22 | 22276800 | 22282812 | chr22:22276800-22282812:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.95 |
0.98 |
0.95 |
0.99 |
0.92 |
0.88 |
0.98 |
0.93 |
0.89 |
0.88 |
0.89 |
0.98 |
chr22 | 22361253 | 22361257 | chr22:22361253-22361257:+:L1HS:NONREF | L1HS | KNR | — | — | 0.09 |
— | 0.95 |
— | 0.32 |
0.61 |
— | — | 0.68 |
0.92 |
0.62 |
0.95 |
chr22 | 23662983 | 23669138 | chr22:23662983-23669138:+:L1PA4:REF | L1PA4 | REF | full-length | GUSBP11 | 0.17 |
0.14 |
0.46 |
— | — | — | 0.29 |
0.45 |
— | — | 0.37 |
0.45 |
chr22 | 28059912 | 28059914 | chr22:28059912-28059914:-:L1HS:NONREF | L1HS | KNR | — | TTC28 | 0.9 |
— | — | — | — | 0.85 |
— | 0.74 |
— | — | — | — |
chr22 | 28133242 | 28134796 | chr22:28133242-28134796:+:L1P1:REF | L1P1 | REF | 3prime-truncated | TTC28 | 0.4 |
0.76 |
0.98 |
0.99 |
0.91 |
0.97 |
1.0 |
0.98 |
0.98 |
0.95 |
0.96 |
0.32 |
chr22 | 28209186 | 28215291 | chr22:28209186-28215291:+:L1PA5:REF | L1PA5 | REF | full-length | TTC28 | 0.68 |
0.97 |
0.97 |
0.98 |
0.81 |
0.97 |
0.97 |
0.96 |
0.86 |
0.94 |
0.97 |
0.61 |
chr22 | 28386847 | 28392869 | chr22:28386847-28392869:-:L1PA3:REF | L1PA3 | REF | full-length | TTC28 | 0.8 |
0.93 |
0.95 |
0.82 |
0.86 |
0.94 |
0.96 |
0.93 |
0.95 |
0.95 |
0.93 |
0.82 |
chr22 | 28663283 | 28669315 | chr22:28663283-28669315:+:L1HS:REF | L1HS | REF | full-length | TTC28 | 0.01 |
0.02 |
0.87 |
0.04 |
0.05 |
0.95 |
0.06 |
0.96 |
0.73 |
0.01 |
0.93 |
0.98 |
chr22 | 32294665 | 32300684 | chr22:32294665-32300684:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.55 |
0.79 |
0.59 |
0.9 |
0.66 |
0.66 |
0.82 |
0.82 |
0.78 |
0.64 |
0.94 |
chr22 | 34549683 | 34555708 | chr22:34549683-34555708:-:L1HS:REF | L1HS | REF | full-length | — | 0.22 |
0.91 |
0.79 |
0.53 |
0.13 |
0.79 |
0.55 |
0.81 |
0.93 |
0.41 |
0.77 |
0.77 |
chr22 | 34677368 | 34683400 | chr22:34677368-34683400:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.2 |
0.8 |
0.51 |
0.7 |
0.69 |
0.75 |
0.7 |
0.86 |
0.53 |
0.73 |
0.83 |
chr22 | 47349343 | 47351653 | chr22:47349343-47351653:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | LOC339685 | 0.01 |
0.63 |
0.5 |
0.24 |
0.88 |
0.57 |
0.23 |
0.68 |
0.7 |
0.04 |
0.62 |
0.86 |
chr22 | 48985761 | 48991792 | chr22:48985761-48991792:-:L1HS:REF | L1HS | REF | full-length | — | 0.65 |
0.98 |
0.75 |
0.83 |
0.21 |
0.79 |
0.7 |
0.83 |
0.92 |
0.66 |
0.82 |
0.89 |
chr22 | 50755469 | 50757323 | chr22:50755469-50757323:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | RPL23AP82 | — | 0.01 |
0.01 |
0.01 |
0.04 |
0.03 |
0.01 |
0.06 |
0.02 |
0.0 |
0.04 |
0.01 |
chrX | 5480456 | 5486466 | chrX:5480456-5486466:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.28 |
0.83 |
0.76 |
0.02 |
0.8 |
0.61 |
0.85 |
0.92 |
0.6 |
0.8 |
0.82 |
chrX | 6932481 | 6933177 | chrX:6932481-6933177:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.04 |
0.31 |
0.89 |
0.73 |
0.02 |
0.94 |
0.96 |
0.86 |
0.9 |
0.68 |
0.96 |
0.91 |
chrX | 7587592 | 7593752 | chrX:7587592-7593752:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.72 |
0.74 |
0.74 |
0.07 |
0.85 |
0.68 |
0.8 |
0.9 |
0.55 |
0.83 |
0.77 |
chrX | 10638084 | 10644167 | chrX:10638084-10644167:+:L1PA5:REF | L1PA5 | REF | full-length | MID1 | — | — | — | — | — | — | — | — | — | — | 0.04 |
— |
chrX | 10715059 | 10721211 | chrX:10715059-10721211:+:L1PA4:REF | L1PA4 | REF | full-length | MID1 | 0.0 |
0.49 |
0.56 |
0.06 |
0.92 |
0.77 |
— | 0.71 |
— | 0.56 |
0.87 |
0.95 |
chrX | 11022415 | 11025259 | chrX:11022415-11025259:-:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.48 |
— |
chrX | 11707248 | 11713279 | chrX:11707248-11713279:+:L1HS:REF | L1HS | REF | full-length | — | — | 0.52 |
0.81 |
— | 0.04 |
0.89 |
0.85 |
0.84 |
0.94 |
0.72 |
0.96 |
— |
chrX | 11935296 | 11941314 | chrX:11935296-11941314:-:L1HS:REF | L1HS | REF | full-length | FRMPD4 | — | 0.36 |
0.74 |
0.68 |
— | — | — | 0.7 |
— | 0.66 |
— | 0.86 |
chrX | 12537884 | 12539638 | chrX:12537884-12539638:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | FRMPD4 | 0.03 |
— | 0.4 |
0.09 |
0.69 |
0.47 |
0.02 |
0.32 |
0.75 |
0.14 |
0.71 |
0.09 |
chrX | 12837171 | 12839824 | chrX:12837171-12839824:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | 0.28 |
0.12 |
— | — | — | 0.23 |
— | 0.04 |
0.33 |
— |
chrX | 13132317 | 13138466 | chrX:13132317-13138466:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.79 |
0.89 |
0.96 |
0.97 |
0.94 |
0.86 |
0.93 |
0.9 |
0.91 |
0.89 |
0.99 |
0.88 |
chrX | 14103920 | 14109975 | chrX:14103920-14109975:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.85 |
0.81 |
0.55 |
0.75 |
0.87 |
0.77 |
0.8 |
0.95 |
0.58 |
0.82 |
0.89 |
chrX | 14457878 | 14464003 | chrX:14457878-14464003:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.19 |
— |
chrX | 14683910 | 14688939 | chrX:14683910-14688939:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | GLRA2 | 0.01 |
0.35 |
0.5 |
0.37 |
0.91 |
0.82 |
0.85 |
0.68 |
0.96 |
0.61 |
0.84 |
0.97 |
chrX | 14809194 | 14815329 | chrX:14809194-14815329:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.03 |
0.75 |
0.75 |
0.79 |
0.92 |
0.96 |
0.92 |
0.84 |
— | 0.78 |
0.97 |
0.98 |
chrX | 14969001 | 14975122 | chrX:14969001-14975122:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.35 |
0.46 |
0.31 |
0.81 |
0.87 |
0.06 |
0.66 |
— | 0.27 |
0.74 |
— |
chrX | 16230649 | 16236856 | chrX:16230649-16236856:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.86 |
0.91 |
0.5 |
0.93 |
0.93 |
0.89 |
0.87 |
0.96 |
0.64 |
0.97 |
0.96 |
chrX | 16321645 | 16327801 | chrX:16321645-16327801:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | 0.5 |
— | — | — | — | — | — | 0.66 |
— |
chrX | 16360076 | 16366218 | chrX:16360076-16366218:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.1 |
0.86 |
0.86 |
0.29 |
0.94 |
0.91 |
0.86 |
0.91 |
— | 0.38 |
0.93 |
0.93 |
chrX | 16497356 | 16500000 | chrX:16497356-16500000:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.68 |
0.87 |
0.37 |
0.91 |
0.92 |
0.94 |
0.82 |
0.99 |
0.39 |
0.98 |
0.98 |
chrX | 17342483 | 17348512 | chrX:17342483-17348512:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.01 |
0.84 |
— | 0.08 |
0.88 |
0.86 |
0.72 |
0.77 |
0.23 |
0.91 |
0.08 |