Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20 | 26233677 | 26239735 | chr20:26233677-26239735:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.89 |
0.95 |
0.66 |
0.71 |
0.81 |
0.73 |
0.77 |
0.92 |
0.88 |
0.81 |
0.94 |
chr20 | 29330490 | 29336615 | chr20:29330490-29336615:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.33 |
— |
chr20 | 29366059 | 29372220 | chr20:29366059-29372220:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.24 |
0.04 |
0.14 |
0.58 |
0.23 |
0.03 |
0.23 |
0.35 |
0.13 |
0.25 |
0.31 |
chr20 | 29466155 | 29472288 | chr20:29466155-29472288:-:L1PA4:REF | L1PA4 | REF | full-length | FRG1EP | 0.6 |
0.34 |
0.72 |
0.17 |
0.91 |
0.69 |
0.26 |
0.76 |
0.8 |
0.23 |
0.64 |
0.84 |
chr20 | 29816735 | 29821369 | chr20:29816735-29821369:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.21 |
— |
chr20 | 30944115 | 30950140 | chr20:30944115-30950140:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.7 |
0.65 |
0.36 |
0.81 |
0.62 |
0.48 |
0.67 |
0.78 |
0.5 |
0.6 |
0.76 |
chr20 | 30970455 | 30976471 | chr20:30970455-30976471:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.67 |
— | — | 0.71 |
0.5 |
0.07 |
0.62 |
— | 0.59 |
0.51 |
0.68 |
chr20 | 30985455 | 30991464 | chr20:30985455-30991464:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.93 |
0.92 |
0.6 |
0.93 |
0.77 |
0.64 |
0.77 |
0.92 |
0.91 |
0.78 |
0.94 |
chr20 | 31332715 | 31338865 | chr20:31332715-31338865:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.36 |
0.68 |
0.18 |
0.9 |
0.53 |
0.56 |
0.57 |
0.85 |
0.26 |
0.53 |
0.69 |
chr20 | 35071283 | 35077392 | chr20:35071283-35077392:-:L1PA5:REF | L1PA5 | REF | full-length | TRPC4AP | — | — | — | — | — | — | — | — | — | — | 0.98 |
— |
chr20 | 39977475 | 39977785 | chr20:39977475-39977785:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.0 |
0.98 |
0.94 |
— | 0.94 |
0.88 |
0.61 |
0.85 |
0.94 |
0.9 |
0.8 |
0.88 |
chr20 | 40619322 | 40625356 | chr20:40619322-40625356:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.95 |
0.9 |
0.64 |
0.07 |
0.81 |
0.52 |
0.82 |
0.86 |
0.39 |
0.84 |
0.94 |
chr20 | 42206269 | 42212317 | chr20:42206269-42212317:+:L1PA2:REF | L1PA2 | REF | full-length | PTPRT | 0.1 |
0.85 |
0.91 |
0.64 |
0.59 |
0.82 |
0.78 |
0.8 |
0.9 |
0.7 |
0.81 |
0.81 |
chr20 | 42614937 | 42620967 | chr20:42614937-42620967:-:L1PA2:REF | L1PA2 | REF | full-length | PTPRT | 0.02 |
0.73 |
0.82 |
0.59 |
0.71 |
0.64 |
0.75 |
0.77 |
0.87 |
0.46 |
0.78 |
0.79 |
chr20 | 43814461 | 43820491 | chr20:43814461-43820491:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.96 |
0.95 |
0.77 |
0.49 |
0.88 |
0.81 |
0.89 |
0.96 |
0.84 |
0.93 |
0.97 |
chr20 | 45660033 | 45666559 | chr20:45660033-45666559:-:L1PA3:REF | L1PA3 | REF | full-length | WFDC11 | 0.01 |
0.95 |
0.74 |
0.42 |
0.95 |
0.54 |
0.52 |
0.68 |
0.92 |
0.71 |
0.59 |
0.97 |
chr20 | 45687891 | 45693981 | chr20:45687891-45693981:-:L1PA3:REF | L1PA3 | REF | full-length | WFDC10B | 0.01 |
0.97 |
0.96 |
0.79 |
0.94 |
0.8 |
0.78 |
0.82 |
0.95 |
0.81 |
0.83 |
0.95 |
chr20 | 48587113 | 48591591 | chr20:48587113-48591591:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.35 |
0.92 |
0.95 |
0.76 |
0.91 |
0.84 |
0.83 |
0.86 |
0.96 |
0.94 |
0.86 |
0.84 |
chr20 | 48976983 | 48983133 | chr20:48976983-48983133:-:L1PA6:REF | L1PA6 | REF | full-length | ARFGEF2 | — | — | — | — | — | — | 0.99 |
— | — | — | — | — |
chr20 | 53455562 | 53461566 | chr20:53455562-53461566:-:L1PA3:REF | L1PA3 | REF | full-length | TSHZ2 | 0.09 |
0.85 |
0.87 |
0.75 |
0.88 |
0.77 |
0.94 |
0.84 |
0.95 |
0.93 |
0.85 |
0.96 |
chr20 | 53472644 | 53478653 | chr20:53472644-53478653:+:L1PA2:REF | L1PA2 | REF | full-length | TSHZ2 | 0.33 |
0.95 |
0.96 |
0.72 |
0.9 |
0.82 |
0.89 |
0.84 |
0.98 |
0.93 |
0.88 |
0.93 |
chr20 | 53503851 | 53509874 | chr20:53503851-53509874:+:L1PA2:REF | L1PA2 | REF | full-length | TSHZ2 | 0.09 |
0.26 |
0.95 |
0.81 |
0.02 |
0.85 |
0.31 |
0.85 |
0.75 |
0.43 |
0.88 |
0.52 |
chr20 | 54782510 | 54788349 | chr20:54782510-54788349:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.05 |
0.57 |
0.23 |
0.81 |
0.62 |
0.32 |
0.65 |
0.88 |
0.11 |
0.58 |
0.58 |
chr20 | 55220304 | 55226469 | chr20:55220304-55226469:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.11 |
0.5 |
0.33 |
0.75 |
0.43 |
0.04 |
0.45 |
0.77 |
0.03 |
0.35 |
— |
chr20 | 55859566 | 55865521 | chr20:55859566-55865521:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.54 |
0.83 |
0.68 |
0.87 |
— | — | — | 0.89 |
chr20 | 55900229 | 55906399 | chr20:55900229-55906399:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.17 |
0.49 |
0.2 |
0.9 |
0.58 |
0.4 |
0.6 |
0.87 |
0.21 |
0.6 |
0.45 |
chr20 | 56336480 | 56338612 | chr20:56336480-56338612:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
0.41 |
0.45 |
0.1 |
0.89 |
0.31 |
0.25 |
0.4 |
0.69 |
0.1 |
0.29 |
0.22 |
chr20 | 59531777 | 59537803 | chr20:59531777-59537803:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.06 |
0.74 |
0.75 |
— | 0.78 |
— | 0.7 |
0.78 |
— | 0.6 |
0.65 |
0.81 |
chr20 | 61397396 | 61397400 | chr20:61397396-61397400:+:L1HS:NONREF | L1HS | KNR | — | CDH4 | — | — | — | — | — | — | 0.91 |
— | — | — | 0.96 |
— |
chr21 | 5348617 | 5354771 | chr21:5348617-5354771:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | 0.85 |
— | — | — | — | 0.78 |
— |
chr21 | 8767450 | 8773597 | chr21:8767450-8773597:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.14 |
0.27 |
0.51 |
0.49 |
0.78 |
0.58 |
0.43 |
0.7 |
0.87 |
0.21 |
0.57 |
0.71 |
chr21 | 10631089 | 10637220 | chr21:10631089-10637220:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.08 |
— | 0.11 |
0.7 |
0.44 |
0.25 |
0.46 |
— | 0.04 |
0.51 |
0.27 |
chr21 | 13131778 | 13137920 | chr21:13131778-13137920:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.09 |
0.23 |
0.42 |
0.8 |
0.5 |
0.08 |
0.51 |
0.77 |
0.03 |
0.5 |
0.47 |
chr21 | 13990185 | 13995598 | chr21:13990185-13995598:-:L1P1:REF | L1P1 | REF | 3prime-truncated | ANKRD20A11P | 0.01 |
0.8 |
0.61 |
0.44 |
0.75 |
0.47 |
0.48 |
0.54 |
0.7 |
0.32 |
0.53 |
0.61 |
chr21 | 14778901 | 14785063 | chr21:14778901-14785063:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.89 |
0.99 |
0.75 |
0.14 |
0.75 |
0.43 |
0.55 |
0.47 |
0.94 |
0.61 |
0.32 |
0.11 |
chr21 | 14927082 | 14933113 | chr21:14927082-14933113:+:L1PA2:REF | L1PA2 | REF | full-length | LINC02246 | 0.82 |
0.01 |
0.96 |
0.89 |
0.19 |
0.98 |
0.98 |
0.99 |
0.93 |
0.95 |
0.96 |
0.87 |
chr21 | 14933877 | 14939951 | chr21:14933877-14939951:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.67 |
0.98 |
0.95 |
0.81 |
0.92 |
0.93 |
1.0 |
0.93 |
0.92 |
0.93 |
0.94 |
0.51 |
chr21 | 17090513 | 17096530 | chr21:17090513-17096530:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.71 |
— |
chr21 | 17327482 | 17333500 | chr21:17327482-17333500:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.36 |
0.68 |
0.27 |
0.49 |
0.51 |
0.02 |
0.66 |
0.72 |
0.36 |
0.51 |
— |
chr21 | 17376038 | 17381930 | chr21:17376038-17381930:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.84 |
0.94 |
0.86 |
0.47 |
0.9 |
0.91 |
0.88 |
0.9 |
0.89 |
0.95 |
0.92 |
chr21 | 21885566 | 21885568 | chr21:21885566-21885568:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.83 |
— |
chr21 | 22253869 | 22253871 | chr21:22253869-22253871:-:L1HS:NONREF | L1HS | KNR | — | — | 0.01 |
— | 0.76 |
0.83 |
— | — | — | 0.86 |
0.93 |
0.7 |
0.84 |
0.91 |
chr21 | 22493175 | 22499632 | chr21:22493175-22499632:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.96 |
0.54 |
0.7 |
0.89 |
0.49 |
0.04 |
0.49 |
0.92 |
0.12 |
0.43 |
0.53 |
chr21 | 25918367 | 25924392 | chr21:25918367-25924392:+:L1PA2:REF | L1PA2 | REF | full-length | APP | 0.06 |
0.97 |
0.97 |
0.98 |
0.86 |
0.97 |
0.86 |
0.95 |
0.95 |
0.96 |
0.98 |
0.98 |
chr21 | 28676917 | 28683062 | chr21:28676917-28683062:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.97 |
0.87 |
0.61 |
0.9 |
0.96 |
0.72 |
0.97 |
0.97 |
0.74 |
0.97 |
0.95 |
chr21 | 31814220 | 31820362 | chr21:31814220-31820362:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.93 |
0.81 |
0.45 |
0.8 |
0.79 |
0.74 |
0.72 |
0.92 |
0.72 |
0.75 |
0.84 |
chr21 | 33925606 | 33931606 | chr21:33925606-33931606:-:L1PA2:REF | L1PA2 | REF | full-length | LINC00649 | 0.0 |
0.86 |
0.97 |
0.96 |
0.03 |
0.92 |
0.98 |
0.92 |
0.47 |
0.3 |
0.99 |
0.98 |
chr21 | 35493766 | 35499791 | chr21:35493766-35499791:-:L1PA2:REF | L1PA2 | REF | full-length | LOC100506403 | 0.77 |
0.94 |
0.96 |
0.86 |
0.14 |
0.96 |
0.88 |
0.92 |
0.91 |
0.9 |
0.94 |
0.9 |
chr21 | 36616544 | 36622673 | chr21:36616544-36622673:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.94 |
0.68 |
0.44 |
0.69 |
0.67 |
0.19 |
0.82 |
0.75 |
0.66 |
0.67 |
0.78 |
chr21 | 37109076 | 37115174 | chr21:37109076-37115174:+:L1PA4:REF | L1PA4 | REF | full-length | TTC3 | 0.98 |
0.74 |
0.9 |
0.79 |
0.71 |
0.86 |
0.97 |
0.72 |
0.75 |
0.81 |
0.88 |
0.85 |