Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7 | 136414180 | 136420210 | chr7:136414180-136420210:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.58 |
0.71 |
0.56 |
0.24 |
0.74 |
0.73 |
0.81 |
0.82 |
0.36 |
0.81 |
0.75 |
chr7 | 136774756 | 136780783 | chr7:136774756-136780783:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.63 |
0.71 |
0.59 |
0.36 |
0.8 |
0.75 |
0.85 |
0.93 |
0.53 |
0.83 |
0.74 |
chr7 | 136831191 | 136837216 | chr7:136831191-136837216:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.62 |
0.9 |
0.82 |
0.24 |
0.88 |
0.84 |
0.92 |
0.81 |
0.66 |
0.93 |
0.88 |
chr7 | 136978456 | 136984900 | chr7:136978456-136984900:-:L1PA7:REF | L1PA7 | REF | full-length | CHRM2 | 0.03 |
0.06 |
0.93 |
0.09 |
0.95 |
0.96 |
0.04 |
1.0 |
0.96 |
0.04 |
0.98 |
0.32 |
chr7 | 137181608 | 137187601 | chr7:137181608-137187601:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.68 |
0.89 |
0.7 |
0.11 |
0.9 |
0.73 |
0.92 |
0.9 |
0.33 |
0.98 |
0.83 |
chr7 | 137424398 | 137430564 | chr7:137424398-137430564:+:L1PA3:REF | L1PA3 | REF | full-length | DGKI | 0.01 |
0.2 |
0.91 |
— | 0.9 |
0.98 |
0.52 |
0.96 |
— | 0.35 |
0.91 |
0.78 |
chr7 | 140103315 | 140109396 | chr7:140103315-140109396:-:L1PA5:REF | L1PA5 | REF | full-length | KDM7A | 0.94 |
0.98 |
0.99 |
0.98 |
0.93 |
0.98 |
0.98 |
1.0 |
0.96 |
0.97 |
0.98 |
0.98 |
chr7 | 140709367 | 140709369 | chr7:140709367-140709369:-:L1HS:NONREF | L1HS | UNKNR | — | NDUFB2 | — | — | — | 0.98 |
— | — | — | — | — | — | — | — |
chr7 | 141032606 | 141038609 | chr7:141032606-141038609:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | — | — | 0.23 |
— | 0.71 |
— | — | 0.64 |
0.76 |
0.87 |
chr7 | 141062014 | 141068042 | chr7:141062014-141068042:-:L1HS:REF | L1HS | REF | full-length | TMEM178B | 0.2 |
0.96 |
0.96 |
0.67 |
0.12 |
0.76 |
0.83 |
0.75 |
0.89 |
0.89 |
0.85 |
0.88 |
chr7 | 141769961 | 141776086 | chr7:141769961-141776086:-:L1PA4:REF | L1PA4 | REF | full-length | TAS2R4 | 0.97 |
0.98 |
0.97 |
0.97 |
0.91 |
0.98 |
0.99 |
0.96 |
0.98 |
0.97 |
0.97 |
0.99 |
chr7 | 141920659 | 141926712 | chr7:141920659-141926712:-:L1HS:REF | L1HS | REF | full-length | CLEC5A | 0.16 |
0.89 |
0.92 |
0.68 |
0.26 |
0.59 |
0.57 |
0.73 |
0.7 |
0.62 |
0.79 |
0.92 |
chr7 | 141980085 | 141986114 | chr7:141980085-141986114:-:L1PA3:REF | L1PA3 | REF | full-length | TAS2R38 | 0.01 |
0.86 |
0.95 |
0.73 |
0.09 |
0.77 |
0.75 |
0.79 |
0.91 |
0.3 |
0.8 |
0.93 |
chr7 | 143088273 | 143094435 | chr7:143088273-143094435:+:L1PA4:REF | L1PA4 | REF | full-length | TCAF2 | 0.01 |
0.27 |
0.56 |
0.22 |
0.84 |
0.66 |
0.52 |
0.61 |
0.88 |
0.17 |
0.58 |
0.75 |
chr7 | 143121570 | 143121575 | chr7:143121570-143121575:+:L1HS:NONREF | L1HS | KNR | — | TCAF2 | 0.01 |
— | — | — | — | — | — | 0.87 |
— | — | — | — |
chr7 | 143160218 | 143166355 | chr7:143160218-143166355:-:L1PA5:REF | L1PA5 | REF | full-length | TCAF2 | 0.01 |
0.83 |
0.34 |
0.08 |
0.69 |
0.3 |
0.16 |
0.26 |
0.57 |
0.05 |
0.22 |
0.31 |
chr7 | 145240322 | 145242068 | chr7:145240322-145242068:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.15 |
0.5 |
— | 0.89 |
0.56 |
0.4 |
0.63 |
0.92 |
0.22 |
0.65 |
— |
chr7 | 145412976 | 145419111 | chr7:145412976-145419111:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.41 |
0.66 |
0.46 |
0.9 |
0.65 |
0.32 |
0.76 |
0.94 |
0.3 |
0.74 |
0.73 |
chr7 | 145966590 | 145972707 | chr7:145966590-145972707:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.48 |
0.18 |
0.61 |
0.56 |
0.89 |
0.67 |
0.55 |
0.66 |
0.95 |
0.24 |
0.65 |
0.77 |
chr7 | 146013558 | 146019592 | chr7:146013558-146019592:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.8 |
0.83 |
0.74 |
0.23 |
0.82 |
0.77 |
0.78 |
0.91 |
0.7 |
0.84 |
0.93 |
chr7 | 146042028 | 146043876 | chr7:146042028-146043876:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.11 |
0.19 |
0.67 |
0.49 |
— | — | 0.47 |
0.69 |
— | 0.52 |
0.67 |
0.78 |
chr7 | 146905784 | 146911817 | chr7:146905784-146911817:+:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP2 | 0.02 |
0.75 |
0.95 |
0.71 |
0.14 |
0.82 |
0.78 |
0.86 |
0.96 |
0.85 |
0.82 |
0.92 |
chr7 | 146928453 | 146934611 | chr7:146928453-146934611:+:L1PA3:REF | L1PA3 | REF | full-length | CNTNAP2 | — | — | 0.95 |
— | — | — | 0.57 |
0.74 |
— | 0.48 |
0.77 |
0.64 |
chr7 | 147732040 | 147738166 | chr7:147732040-147738166:-:L1PA5:REF | L1PA5 | REF | full-length | CNTNAP2 | 0.01 |
0.6 |
0.81 |
0.53 |
0.91 |
0.77 |
0.45 |
0.79 |
0.94 |
0.64 |
0.75 |
0.82 |
chr7 | 147842591 | 147848623 | chr7:147842591-147848623:-:L1HS:REF | L1HS | REF | full-length | CNTNAP2 | 0.01 |
0.65 |
0.76 |
0.51 |
0.23 |
0.74 |
0.58 |
0.79 |
0.92 |
0.63 |
0.7 |
0.83 |
chr7 | 147862933 | 147869109 | chr7:147862933-147869109:-:L1PA6:REF | L1PA6 | REF | full-length | CNTNAP2 | 0.01 |
0.32 |
0.33 |
0.14 |
0.7 |
0.37 |
0.02 |
0.39 |
0.86 |
0.24 |
0.32 |
0.4 |
chr7 | 150574480 | 150580621 | chr7:150574480-150580621:-:L1PA4:REF | L1PA4 | REF | full-length | GIMAP4 | 0.0 |
0.43 |
0.19 |
— | 0.82 |
0.41 |
0.1 |
0.52 |
0.76 |
0.02 |
0.49 |
0.48 |
chr7 | 150597094 | 150602628 | chr7:150597094-150602628:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.0 |
0.44 |
0.37 |
0.12 |
0.83 |
0.52 |
0.05 |
0.4 |
0.79 |
0.05 |
0.44 |
0.43 |
chr7 | 150605597 | 150609905 | chr7:150605597-150609905:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.44 |
0.4 |
0.0 |
0.75 |
0.19 |
0.23 |
0.26 |
0.79 |
0.04 |
0.26 |
0.2 |
chr7 | 150678372 | 150680224 | chr7:150678372-150680224:+:L1P1:REF | L1P1 | REF | 3prime-truncated | GIMAP2 | 0.0 |
0.51 |
0.44 |
0.42 |
0.86 |
0.55 |
0.5 |
0.58 |
0.9 |
0.04 |
0.55 |
0.78 |
chr7 | 150706238 | 150712266 | chr7:150706238-150712266:+:L1PA3:REF | L1PA3 | REF | full-length | GIMAP1-GIMAP5 | 0.01 |
0.87 |
0.56 |
0.11 |
0.78 |
0.31 |
0.04 |
0.45 |
0.7 |
— | 0.53 |
0.48 |
chr7 | 150807555 | 150813715 | chr7:150807555-150813715:+:L1PA6:REF | L1PA6 | REF | full-length | TMEM176A | 0.03 |
0.86 |
0.45 |
0.05 |
0.94 |
0.32 |
0.56 |
0.52 |
0.88 |
0.17 |
0.65 |
0.38 |
chr7 | 152060477 | 152066587 | chr7:152060477-152066587:-:L1PA5:REF | L1PA5 | REF | full-length | GALNT11 | 0.78 |
0.94 |
0.98 |
0.94 |
0.81 |
0.98 |
0.97 |
0.96 |
0.94 |
0.95 |
0.95 |
0.97 |
chr7 | 153316231 | 153318750 | chr7:153316231-153318750:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.01 |
0.41 |
0.56 |
0.15 |
0.86 |
0.59 |
0.44 |
0.63 |
0.91 |
0.22 |
0.58 |
0.6 |
chr7 | 153865655 | 153871799 | chr7:153865655-153871799:-:L1PA4:REF | L1PA4 | REF | full-length | DPP6 | 0.02 |
0.5 |
0.61 |
0.45 |
0.91 |
0.72 |
0.48 |
0.7 |
0.95 |
0.35 |
0.76 |
0.76 |
chr7 | 156909394 | 156915542 | chr7:156909394-156915542:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.46 |
0.89 |
0.95 |
0.86 |
0.85 |
0.81 |
0.88 |
0.89 |
0.88 |
0.94 |
0.9 |
0.88 |
chr7 | 159298379 | 159304524 | chr7:159298379-159304524:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.15 |
— |
chr8 | 773346 | 779366 | chr8:773346-779366:-:L1PA2:REF | L1PA2 | REF | full-length | DLGAP2 | 0.32 |
0.93 |
0.94 |
0.73 |
0.68 |
0.79 |
0.81 |
0.77 |
0.9 |
0.7 |
0.79 |
0.79 |
chr8 | 1607577 | 1613555 | chr8:1607577-1613555:+:L1PA2:REF | L1PA2 | REF | full-length | DLGAP2 | 0.02 |
0.95 |
0.86 |
0.7 |
0.21 |
0.23 |
0.17 |
0.11 |
0.29 |
— | 0.18 |
0.86 |
chr8 | 2301964 | 2307993 | chr8:2301964-2307993:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
— | — | — | — | — | — | — | — | — | 0.74 |
— |
chr8 | 3288826 | 3294970 | chr8:3288826-3294970:-:L1PA4:REF | L1PA4 | REF | full-length | CSMD1 | 0.01 |
0.24 |
0.56 |
0.5 |
0.92 |
0.67 |
0.45 |
0.73 |
0.93 |
0.21 |
0.67 |
0.73 |
chr8 | 3450312 | 3456444 | chr8:3450312-3456444:-:L1PA4:REF | L1PA4 | REF | full-length | CSMD1 | — | 0.1 |
— | — | 0.84 |
0.2 |
— | 0.12 |
— | — | — | 0.11 |
chr8 | 4568160 | 4574579 | chr8:4568160-4574579:-:L1PA7:REF | L1PA7 | REF | full-length | CSMD1 | — | — | — | — | — | — | — | — | — | — | 0.42 |
— |
chr8 | 4854406 | 4860419 | chr8:4854406-4860419:+:L1PA2:REF | L1PA2 | REF | full-length | CSMD1 | 0.0 |
0.15 |
0.62 |
0.4 |
0.69 |
0.64 |
0.62 |
0.72 |
0.95 |
0.3 |
0.7 |
0.69 |
chr8 | 5187029 | 5193146 | chr8:5187029-5193146:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
— | 0.7 |
0.48 |
— | 0.7 |
0.61 |
0.74 |
0.9 |
0.27 |
0.7 |
0.77 |
chr8 | 6085774 | 6091899 | chr8:6085774-6091899:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.39 |
0.69 |
— | 0.9 |
0.81 |
0.47 |
0.82 |
0.95 |
0.45 |
0.78 |
0.84 |
chr8 | 6191081 | 6197149 | chr8:6191081-6197149:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.36 |
0.81 |
0.35 |
0.95 |
0.72 |
0.3 |
0.72 |
0.76 |
0.56 |
0.63 |
0.48 |
chr8 | 8470859 | 8476906 | chr8:8470859-8476906:+:L1HS:REF | L1HS | REF | full-length | — | 0.31 |
0.91 |
— | 0.88 |
0.29 |
0.86 |
0.91 |
0.86 |
0.96 |
0.94 |
— | 0.91 |
chr8 | 9654760 | 9656611 | chr8:9654760-9656611:+:L1P1:REF | L1P1 | REF | 3prime-truncated | TNKS | 0.97 |
0.97 |
0.98 |
0.97 |
0.93 |
0.98 |
0.99 |
0.98 |
0.98 |
0.98 |
0.98 |
0.98 |
chr8 | 9815681 | 9818033 | chr8:9815681-9818033:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.04 |
0.47 |
0.64 |
0.03 |
— | 0.49 |
0.5 |
0.57 |
— | 0.7 |
0.59 |
0.85 |