Bs-ATLAS-seq data were deposited in the ArrayExpress database (www.ebi.ac.uk/arrayexpress) under accession numbers E-MTAB-10895 and E-MTAB-12240.
The scripts written to call L1 insertions and CpG methylation from bs-ATLAS-seq data, as well as useful annotation files used in the course of this study, are available at https://github.com/retrogenomics/bs-ATLAS-seq.
| Methylation data | |
| Array Express | |
| Zenodo | https://doi.org/10.5281/zenodo.7097318 |
| euL1db | https://eul1db.ircan.org/ |
| L1base2 | http://l1base.charite.de/ |
| Dfam | https://dfam.org/home |
| RepBase | https://www.girinst.org/repbase/ |
| UCSC | https://genome.ucsc.edu/ |