Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 99000538 | 99002862 | chr2:99000538-99002862:+:L1P1:REF | L1P1 | REF | 3prime-truncated | TSGA10 | 0.0 |
— | — | — | — | 0.74 |
— | — | — | 0.82 |
0.75 |
— |
chr2 | 101935381 | 101940619 | chr2:101935381-101940619:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.01 |
0.95 |
0.9 |
0.17 |
0.87 |
0.67 |
0.52 |
0.72 |
0.96 |
0.81 |
0.83 |
0.9 |
chr2 | 102324371 | 102330501 | chr2:102324371-102330501:+:L1PA4:REF | L1PA4 | REF | full-length | IL1RL1 | 0.43 |
0.88 |
0.72 |
0.45 |
0.79 |
0.71 |
0.48 |
0.9 |
0.88 |
0.57 |
0.79 |
0.83 |
chr2 | 102566355 | 102572385 | chr2:102566355-102572385:-:L1HS:REF | L1HS | REF | full-length | — | 0.08 |
0.98 |
0.94 |
0.79 |
0.17 |
0.84 |
0.8 |
0.87 |
0.95 |
0.84 |
0.88 |
0.97 |
chr2 | 102874020 | 102880174 | chr2:102874020-102880174:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01796 | 0.09 |
0.94 |
0.92 |
0.54 |
0.9 |
0.72 |
0.59 |
0.79 |
0.94 |
0.83 |
0.75 |
0.94 |
chr2 | 104607338 | 104610704 | chr2:104607338-104610704:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
— | 0.73 |
0.04 |
0.74 |
0.32 |
0.19 |
0.24 |
1.0 |
0.76 |
0.23 |
0.31 |
chr2 | 105211969 | 105214490 | chr2:105211969-105214490:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.19 |
0.58 |
0.96 |
0.85 |
0.93 |
0.87 |
0.84 |
0.85 |
0.98 |
0.92 |
0.88 |
0.97 |
chr2 | 106130892 | 106136925 | chr2:106130892-106136925:+:L1PA2:REF | L1PA2 | REF | full-length | UXS1 | 0.83 |
0.94 |
0.96 |
0.83 |
0.21 |
0.81 |
0.99 |
0.9 |
0.53 |
0.06 |
0.96 |
0.98 |
chr2 | 109111631 | 109117785 | chr2:109111631-109117785:-:L1PA3:REF | L1PA3 | REF | full-length | SH3RF3-AS1 | 0.07 |
0.95 |
0.86 |
— | 0.95 |
0.92 |
0.84 |
0.89 |
0.95 |
0.8 |
0.94 |
0.92 |
chr2 | 109952956 | 109959093 | chr2:109952956-109959093:+:L1PA6:REF | L1PA6 | REF | full-length | LIMS3-LOC440895 | 0.0 |
0.93 |
0.93 |
— | 0.89 |
0.81 |
0.74 |
0.63 |
1.0 |
0.9 |
0.78 |
0.98 |
chr2 | 110250921 | 110257059 | chr2:110250921-110257059:+:L1PA6:REF | L1PA6 | REF | full-length | LOC100507334 | — | 0.91 |
0.68 |
— | 0.86 |
0.68 |
0.65 |
0.65 |
0.83 |
0.73 |
0.55 |
0.77 |
chr2 | 110274188 | 110274519 | chr2:110274188-110274519:-:L1P3:REF | L1P3 | REF | 3prime-truncated | LOC100507334 | 0.0 |
0.74 |
0.9 |
0.17 |
0.84 |
0.71 |
0.08 |
0.57 |
0.96 |
0.79 |
0.72 |
0.7 |
chr2 | 110412395 | 110418532 | chr2:110412395-110418532:-:L1PA6:REF | L1PA6 | REF | full-length | LOC100288570 | 0.03 |
0.96 |
0.93 |
— | 0.91 |
0.93 |
0.87 |
0.71 |
0.96 |
0.87 |
0.84 |
0.95 |
chr2 | 110697181 | 110697512 | chr2:110697181-110697512:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.88 |
0.89 |
0.93 |
— | 0.93 |
0.63 |
0.22 |
0.67 |
0.95 |
0.88 |
0.7 |
0.93 |
chr2 | 112503812 | 112509845 | chr2:112503812-112509845:-:L1HS:REF | L1HS | REF | full-length | TTL | 0.61 |
0.88 |
0.98 |
0.95 |
0.4 |
0.97 |
0.98 |
0.97 |
0.96 |
0.95 |
0.98 |
0.98 |
chr2 | 113471481 | 113477545 | chr2:113471481-113477545:-:L1PA3:REF | L1PA3 | REF | full-length | CBWD2 | 0.94 |
0.98 |
0.91 |
0.98 |
0.37 |
0.99 |
0.98 |
0.89 |
0.85 |
0.91 |
0.94 |
0.98 |
chr2 | 113656151 | 113657874 | chr2:113656151-113657874:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.03 |
0.01 |
0.92 |
0.64 |
0.18 |
0.82 |
0.0 |
0.94 |
0.49 |
0.01 |
0.95 |
0.96 |
chr2 | 114012951 | 114019126 | chr2:114012951-114019126:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01191 | 0.02 |
— | 0.93 |
0.16 |
0.98 |
0.82 |
0.79 |
0.83 |
0.86 |
0.31 |
0.92 |
0.87 |
chr2 | 114096298 | 114102405 | chr2:114096298-114102405:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.6 |
0.46 |
0.15 |
0.87 |
0.53 |
0.54 |
0.64 |
0.86 |
0.1 |
0.61 |
0.76 |
chr2 | 115004354 | 115007143 | chr2:115004354-115007143:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | DPP10 | 0.01 |
0.65 |
0.65 |
0.32 |
0.82 |
0.72 |
0.73 |
0.76 |
0.87 |
0.37 |
0.76 |
0.71 |
chr2 | 115376550 | 115382573 | chr2:115376550-115382573:-:L1PA3:REF | L1PA3 | REF | full-length | DPP10 | 0.06 |
0.55 |
0.69 |
0.71 |
0.9 |
0.74 |
0.81 |
0.79 |
0.97 |
0.65 |
0.8 |
0.84 |
chr2 | 115799431 | 115805573 | chr2:115799431-115805573:-:L1PA4:REF | L1PA4 | REF | full-length | DPP10 | 0.01 |
0.5 |
0.7 |
0.6 |
0.88 |
0.74 |
0.8 |
0.73 |
0.97 |
0.43 |
0.8 |
0.82 |
chr2 | 115889046 | 115895541 | chr2:115889046-115895541:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | 0.27 |
0.39 |
— | 0.8 |
0.57 |
0.14 |
0.45 |
0.65 |
0.0 |
0.34 |
0.27 |
chr2 | 116048941 | 116054967 | chr2:116048941-116054967:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.78 |
0.84 |
0.79 |
0.15 |
0.82 |
0.71 |
0.87 |
0.9 |
0.65 |
0.75 |
0.94 |
chr2 | 117001151 | 117007277 | chr2:117001151-117007277:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.0 |
0.31 |
0.0 |
0.81 |
0.15 |
0.33 |
0.28 |
— | 0.01 |
0.33 |
0.0 |
chr2 | 117156034 | 117162051 | chr2:117156034-117162051:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.34 |
0.78 |
0.5 |
0.37 |
0.73 |
0.6 |
0.78 |
0.96 |
0.32 |
0.71 |
0.7 |
chr2 | 117525395 | 117530328 | chr2:117525395-117530328:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.02 |
0.83 |
0.87 |
0.71 |
0.23 |
0.77 |
0.84 |
0.74 |
0.88 |
0.76 |
0.7 |
0.83 |
chr2 | 117579236 | 117582415 | chr2:117579236-117582415:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.03 |
0.89 |
0.75 |
0.7 |
0.91 |
0.64 |
0.66 |
— | 0.95 |
0.66 |
0.7 |
0.74 |
chr2 | 117649184 | 117655215 | chr2:117649184-117655215:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.49 |
0.69 |
0.52 |
0.23 |
0.46 |
0.57 |
0.59 |
0.69 |
0.49 |
0.63 |
0.65 |
chr2 | 117778178 | 117784316 | chr2:117778178-117784316:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.1 |
0.79 |
0.87 |
0.77 |
0.89 |
0.93 |
0.77 |
0.92 |
0.98 |
0.79 |
0.77 |
0.95 |
chr2 | 117803780 | 117809809 | chr2:117803780-117809809:+:L1PA3:REF | L1PA3 | REF | full-length | DDX18 | 0.03 |
0.01 |
0.66 |
0.83 |
0.07 |
0.69 |
0.01 |
0.41 |
0.14 |
0.38 |
0.21 |
0.94 |
chr2 | 118137000 | 118143020 | chr2:118137000-118143020:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.69 |
0.65 |
0.0 |
0.1 |
0.84 |
0.04 |
0.82 |
0.85 |
0.02 |
0.79 |
0.01 |
chr2 | 118895761 | 118901792 | chr2:118895761-118901792:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.97 |
0.86 |
— | 0.62 |
0.81 |
0.83 |
0.82 |
0.96 |
0.67 |
0.82 |
0.86 |
chr2 | 119001633 | 119004483 | chr2:119001633-119004483:-:L1P1:REF | L1P1 | REF | 3prime-truncated | MARCO | 0.02 |
0.91 |
0.75 |
0.01 |
0.77 |
0.44 |
0.28 |
0.5 |
0.85 |
0.07 |
0.37 |
0.58 |
chr2 | 122012673 | 122018708 | chr2:122012673-122018708:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.94 |
0.97 |
0.6 |
0.47 |
0.89 |
0.92 |
0.91 |
0.86 |
0.88 |
0.77 |
0.89 |
chr2 | 122046204 | 122052249 | chr2:122046204-122052249:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.0 |
0.93 |
0.7 |
0.63 |
0.84 |
0.82 |
0.86 |
0.96 |
0.75 |
0.78 |
0.86 |
chr2 | 122348937 | 122352314 | chr2:122348937-122352314:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.04 |
0.02 |
0.21 |
— | 0.22 |
0.62 |
0.54 |
— | — | 0.03 |
0.55 |
— |
chr2 | 122550744 | 122556816 | chr2:122550744-122556816:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.57 |
0.71 |
0.31 |
0.9 |
0.73 |
0.24 |
0.76 |
0.97 |
0.3 |
0.71 |
0.69 |
chr2 | 123628724 | 123634742 | chr2:123628724-123634742:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.56 |
0.56 |
0.59 |
0.44 |
0.71 |
0.62 |
0.72 |
0.82 |
0.38 |
0.77 |
0.76 |
chr2 | 124122949 | 124129073 | chr2:124122949-124129073:+:L1PA5:REF | L1PA5 | REF | full-length | CNTNAP5 | 0.0 |
— | 0.54 |
— | — | 0.69 |
0.36 |
0.35 |
— | 0.35 |
0.23 |
0.29 |
chr2 | 124139775 | 124145807 | chr2:124139775-124145807:+:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP5 | 0.02 |
0.75 |
0.77 |
0.6 |
0.44 |
0.82 |
0.77 |
0.89 |
0.93 |
0.61 |
0.81 |
0.89 |
chr2 | 124356306 | 124362334 | chr2:124356306-124362334:-:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP5 | 0.02 |
0.7 |
0.83 |
0.75 |
0.56 |
0.83 |
0.82 |
0.86 |
0.96 |
0.56 |
0.81 |
0.9 |
chr2 | 124407870 | 124413893 | chr2:124407870-124413893:+:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP5 | 0.03 |
0.77 |
0.79 |
0.65 |
0.23 |
0.85 |
0.91 |
0.85 |
0.93 |
0.59 |
0.81 |
0.87 |
chr2 | 124593139 | 124599168 | chr2:124593139-124599168:-:L1PA2:REF | L1PA2 | REF | full-length | CNTNAP5 | 0.04 |
0.82 |
0.75 |
0.77 |
0.21 |
0.82 |
0.9 |
0.89 |
0.96 |
0.6 |
0.86 |
0.87 |
chr2 | 126178048 | 126184064 | chr2:126178048-126184064:-:L1HS:REF | L1HS | REF | full-length | — | 0.15 |
0.69 |
0.81 |
0.71 |
0.46 |
0.72 |
0.61 |
0.81 |
0.86 |
0.64 |
0.79 |
0.84 |
chr2 | 126195613 | 126199204 | chr2:126195613-126199204:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.04 |
0.3 |
0.68 |
0.07 |
0.85 |
0.47 |
0.38 |
0.63 |
0.93 |
0.31 |
0.62 |
0.32 |
chr2 | 128816413 | 128816415 | chr2:128816413-128816415:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | 0.66 |
0.86 |
0.9 |
— | — | — | 0.88 |
— |
chr2 | 128858984 | 128865016 | chr2:128858984-128865016:-:L1PA2:REF | L1PA2 | REF | full-length | LOC101927881 | 0.02 |
0.92 |
0.94 |
0.69 |
0.14 |
0.87 |
0.78 |
0.81 |
0.89 |
0.8 |
0.86 |
0.9 |
chr2 | 129415687 | 129417400 | chr2:129415687-129417400:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.11 |
0.94 |
0.85 |
0.63 |
0.07 |
0.78 |
0.78 |
0.81 |
0.93 |
0.64 |
0.78 |
0.8 |
chr2 | 129531920 | 129537968 | chr2:129531920-129537968:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.02 |
0.97 |
0.63 |
0.39 |
0.86 |
0.66 |
0.66 |
0.77 |
0.92 |
0.49 |
0.67 |
0.72 |