Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 179087387 | 179093560 | chr2:179087387-179093560:-:L1PA4:REF | L1PA4 | REF | full-length | SESTD1 | 0.01 |
0.83 |
0.78 |
0.73 |
0.92 |
0.72 |
0.51 |
0.85 |
0.94 |
0.7 |
0.81 |
0.97 |
chr2 | 179195944 | 179201918 | chr2:179195944-179201918:+:L1PA3:REF | L1PA3 | REF | full-length | SESTD1 | 0.01 |
0.92 |
0.97 |
0.97 |
0.87 |
0.93 |
0.98 |
0.94 |
0.93 |
0.96 |
0.93 |
0.93 |
chr2 | 180833661 | 180839689 | chr2:180833661-180839689:-:L1HS:REF | L1HS | REF | full-length | SCHLAP1 | 0.03 |
0.95 |
0.98 |
0.93 |
0.11 |
0.94 |
0.76 |
0.95 |
0.81 |
0.96 |
0.98 |
0.98 |
chr2 | 181731649 | 181737829 | chr2:181731649-181737829:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.02 |
0.99 |
0.82 |
0.93 |
0.85 |
0.78 |
0.59 |
0.83 |
0.88 |
0.79 |
0.72 |
0.97 |
chr2 | 182025225 | 182031239 | chr2:182025225-182031239:-:L1PA2:REF | L1PA2 | REF | full-length | PPP1R1C | 0.06 |
0.96 |
0.95 |
0.97 |
0.1 |
0.88 |
0.84 |
0.95 |
0.58 |
0.93 |
0.95 |
0.98 |
chr2 | 182212404 | 182218434 | chr2:182212404-182218434:+:L1PA3:REF | L1PA3 | REF | full-length | PDE1A | 0.07 |
0.97 |
0.97 |
0.9 |
0.93 |
0.94 |
0.89 |
0.96 |
0.97 |
0.95 |
0.97 |
0.97 |
chr2 | 183448314 | 183454476 | chr2:183448314-183454476:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.72 |
0.76 |
0.12 |
0.85 |
0.51 |
0.4 |
0.6 |
0.92 |
0.28 |
0.55 |
0.97 |
chr2 | 183586195 | 183592337 | chr2:183586195-183592337:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.88 |
0.73 |
0.51 |
0.89 |
0.66 |
0.53 |
0.76 |
0.98 |
0.41 |
0.68 |
0.98 |
chr2 | 185419434 | 185425462 | chr2:185419434-185425462:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.86 |
0.89 |
0.94 |
0.05 |
0.74 |
0.81 |
0.72 |
0.09 |
0.43 |
0.46 |
0.92 |
chr2 | 185585887 | 185591908 | chr2:185585887-185591908:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.83 |
0.64 |
0.78 |
0.14 |
0.71 |
0.42 |
0.68 |
0.94 |
0.52 |
0.79 |
0.96 |
chr2 | 185841720 | 185847756 | chr2:185841720-185847756:-:L1PA2:REF | L1PA2 | REF | full-length | FSIP2 | 0.16 |
0.78 |
0.65 |
0.91 |
0.75 |
0.72 |
0.79 |
0.66 |
0.85 |
0.81 |
0.75 |
0.78 |
chr2 | 185864597 | 185870656 | chr2:185864597-185870656:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.84 |
0.79 |
0.88 |
0.11 |
0.79 |
0.87 |
0.89 |
0.86 |
0.01 |
0.86 |
0.9 |
chr2 | 188123561 | 188129537 | chr2:188123561-188129537:+:L1PA3:REF | L1PA3 | REF | full-length | LINC01090 | 0.02 |
0.3 |
0.89 |
0.81 |
0.16 |
0.55 |
0.05 |
0.52 |
0.22 |
0.12 |
0.47 |
0.07 |
chr2 | 189891522 | 189893682 | chr2:189891522-189893682:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.36 |
0.94 |
0.97 |
0.79 |
0.94 |
0.9 |
0.61 |
0.95 |
0.97 |
0.94 |
0.94 |
0.97 |
chr2 | 190772250 | 190778401 | chr2:190772250-190778401:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.65 |
0.96 |
0.93 |
0.97 |
0.92 |
0.89 |
0.95 |
0.9 |
0.95 |
0.86 |
0.93 |
0.97 |
chr2 | 191160584 | 191164944 | chr2:191160584-191164944:+:L1P2:REF | L1P2 | REF | 3prime-truncated | STAT4 | 0.01 |
0.81 |
0.9 |
0.73 |
0.93 |
0.95 |
0.38 |
0.92 |
0.94 |
0.89 |
0.91 |
0.88 |
chr2 | 191761849 | 191767876 | chr2:191761849-191767876:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.88 |
0.88 |
0.91 |
— | 0.4 |
0.87 |
0.82 |
— | 0.86 |
0.89 |
0.89 |
0.91 |
chr2 | 193170704 | 193171720 | chr2:193170704-193171720:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.05 |
0.98 |
0.9 |
0.98 |
0.05 |
0.84 |
0.92 |
0.83 |
0.06 |
0.66 |
0.88 |
0.98 |
chr2 | 193212420 | 193218448 | chr2:193212420-193218448:-:L1HS:REF | L1HS | REF | full-length | — | 0.08 |
0.94 |
0.89 |
0.93 |
0.13 |
0.84 |
0.86 |
0.84 |
0.95 |
0.93 |
0.86 |
0.98 |
chr2 | 193704913 | 193710934 | chr2:193704913-193710934:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | — | — | 0.72 |
0.58 |
0.59 |
— | — | 0.61 |
0.65 |
0.99 |
chr2 | 193903874 | 193905536 | chr2:193903874-193905536:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.41 |
0.4 |
0.41 |
0.36 |
0.36 |
0.28 |
0.43 |
0.45 |
0.39 |
0.44 |
0.47 |
chr2 | 194854737 | 194855258 | chr2:194854737-194855258:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
— | 0.44 |
— | — | 0.36 |
0.01 |
0.38 |
— | — | 0.27 |
— |
chr2 | 195067521 | 195073543 | chr2:195067521-195073543:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.79 |
0.67 |
0.83 |
0.18 |
0.74 |
0.72 |
0.7 |
0.88 |
0.82 |
0.77 |
0.98 |
chr2 | 195228435 | 195234459 | chr2:195228435-195234459:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.13 |
0.74 |
0.78 |
0.74 |
0.28 |
0.74 |
0.67 |
0.72 |
— | 0.77 |
0.8 |
0.9 |
chr2 | 195373191 | 195379241 | chr2:195373191-195379241:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.85 |
0.9 |
0.88 |
0.9 |
0.2 |
0.87 |
0.81 |
0.93 |
0.9 |
0.88 |
0.89 |
0.97 |
chr2 | 195523002 | 195529095 | chr2:195523002-195529095:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.9 |
0.56 |
0.92 |
0.95 |
0.75 |
0.94 |
0.5 |
0.9 |
0.95 |
0.81 |
0.98 |
0.98 |
chr2 | 195743883 | 195749992 | chr2:195743883-195749992:+:L1PA3:REF | L1PA3 | REF | full-length | DNAH7 | 0.96 |
0.61 |
0.97 |
0.98 |
0.92 |
0.97 |
0.88 |
0.99 |
0.96 |
0.96 |
0.99 |
0.99 |
chr2 | 196521488 | 196527500 | chr2:196521488-196527500:-:L1PA2:REF | L1PA2 | REF | full-length | HECW2 | 0.11 |
0.02 |
0.94 |
0.98 |
0.11 |
0.93 |
0.77 |
0.92 |
0.87 |
0.87 |
0.93 |
0.97 |
chr2 | 196905587 | 196911636 | chr2:196905587-196911636:+:L1HS:REF | L1HS | REF | full-length | PGAP1 | 0.49 |
0.91 |
0.13 |
0.97 |
0.11 |
0.94 |
0.97 |
0.92 |
0.46 |
0.06 |
0.97 |
0.97 |
chr2 | 197634735 | 197640761 | chr2:197634735-197640761:-:L1PA2:REF | L1PA2 | REF | full-length | RFTN2 | 0.56 |
0.91 |
0.97 |
0.91 |
0.06 |
0.93 |
0.91 |
0.97 |
0.98 |
0.02 |
0.98 |
0.94 |
chr2 | 197687546 | 197693561 | chr2:197687546-197693561:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.43 |
0.94 |
0.93 |
0.0 |
0.1 |
0.86 |
0.85 |
0.94 |
0.89 |
0.04 |
0.94 |
0.96 |
chr2 | 198017928 | 198024409 | chr2:198017928-198024409:+:L1PA7:REF | L1PA7 | REF | full-length | PLCL1 | — | 0.47 |
0.43 |
— | 0.89 |
0.43 |
0.02 |
0.6 |
0.89 |
0.6 |
0.38 |
0.12 |
chr2 | 198196260 | 198202415 | chr2:198196260-198202415:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.23 |
0.66 |
0.93 |
0.5 |
0.89 |
0.78 |
0.18 |
0.69 |
0.92 |
0.91 |
0.81 |
0.85 |
chr2 | 198915189 | 198915191 | chr2:198915189-198915191:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.49 |
— | — | — | 0.89 |
— | — | — | — | — | 0.98 |
chr2 | 199028485 | 199034598 | chr2:199028485-199034598:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.79 |
0.85 |
0.56 |
0.88 |
0.76 |
0.59 |
0.73 |
0.95 |
0.89 |
0.67 |
0.93 |
chr2 | 199239608 | 199245731 | chr2:199239608-199245731:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.73 |
0.77 |
0.11 |
0.92 |
0.73 |
0.24 |
0.82 |
1.0 |
0.7 |
0.57 |
0.94 |
chr2 | 200561046 | 200567211 | chr2:200561046-200567211:-:L1PA5:REF | L1PA5 | REF | full-length | SGO2 | 0.91 |
0.97 |
0.96 |
0.98 |
0.88 |
0.99 |
0.97 |
0.99 |
0.96 |
0.93 |
0.98 |
0.99 |
chr2 | 201290544 | 201296670 | chr2:201290544-201296670:+:L1PA4:REF | L1PA4 | REF | full-length | FLACC1 | 0.83 |
0.95 |
0.92 |
0.86 |
0.85 |
0.89 |
0.98 |
0.95 |
0.89 |
0.87 |
0.9 |
0.86 |
chr2 | 204991072 | 204997106 | chr2:204991072-204997106:-:L1PA2:REF | L1PA2 | REF | full-length | PARD3B | 0.15 |
0.96 |
0.98 |
0.79 |
0.15 |
0.97 |
0.87 |
0.98 |
0.94 |
0.96 |
0.98 |
0.93 |
chr2 | 206894207 | 206900352 | chr2:206894207-206900352:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | 0.77 |
0.74 |
0.06 |
0.89 |
0.66 |
0.14 |
0.73 |
0.9 |
0.58 |
0.54 |
0.99 |
chr2 | 206908035 | 206914052 | chr2:206908035-206914052:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.61 |
0.93 |
0.47 |
0.77 |
0.8 |
0.7 |
0.81 |
0.94 |
0.84 |
0.77 |
0.98 |
chr2 | 207000910 | 207006934 | chr2:207000910-207006934:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.72 |
0.96 |
0.92 |
0.92 |
0.9 |
0.87 |
0.93 |
0.98 |
— | 0.92 |
0.89 |
chr2 | 207344165 | 207350576 | chr2:207344165-207350576:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.86 |
0.94 |
0.95 |
0.88 |
0.95 |
0.92 |
0.53 |
0.99 |
0.93 |
0.94 |
0.97 |
0.96 |
chr2 | 208800640 | 208806791 | chr2:208800640-208806791:+:L1PA3:REF | L1PA3 | REF | full-length | LOC101927960 | 0.9 |
0.93 |
0.64 |
0.39 |
0.6 |
0.63 |
0.79 |
0.71 |
0.93 |
0.42 |
0.67 |
0.98 |
chr2 | 208811621 | 208817648 | chr2:208811621-208817648:+:L1PA2:REF | L1PA2 | REF | full-length | LOC101927960 | 0.64 |
0.43 |
0.57 |
0.14 |
0.15 |
0.41 |
0.34 |
0.54 |
0.82 |
0.12 |
0.41 |
0.86 |
chr2 | 208831567 | 208837733 | chr2:208831567-208837733:+:L1PA4:REF | L1PA4 | REF | full-length | LOC101927960 | 0.81 |
0.93 |
0.61 |
— | 0.92 |
0.73 |
0.68 |
0.69 |
0.95 |
0.44 |
0.7 |
0.93 |
chr2 | 209128529 | 209134554 | chr2:209128529-209134554:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.69 |
0.59 |
0.23 |
0.76 |
0.61 |
0.37 |
0.61 |
0.93 |
— | 0.59 |
0.91 |
chr2 | 209746180 | 209752208 | chr2:209746180-209752208:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.85 |
0.94 |
0.76 |
0.37 |
0.86 |
0.81 |
0.86 |
0.94 |
0.77 |
0.89 |
0.98 |
chr2 | 211219320 | 211225344 | chr2:211219320-211225344:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.98 |
0.9 |
0.96 |
0.77 |
0.6 |
0.58 |
0.62 |
0.95 |
0.75 |
0.67 |
0.98 |
chr2 | 211888536 | 211894571 | chr2:211888536-211894571:+:L1PA2:REF | L1PA2 | REF | full-length | ERBB4 | 0.03 |
— | — | — | 0.03 |
0.8 |
0.76 |
— | — | — | 0.9 |
— |