Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 185637653 | 185639064 | chr1:185637653-185639064:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | LINC01350 | 0.01 |
0.92 |
0.86 |
0.48 |
0.85 |
0.83 |
0.28 |
0.68 |
0.95 |
0.61 |
0.81 |
0.96 |
chr1 | 185707397 | 185713577 | chr1:185707397-185713577:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.91 |
0.94 |
0.55 |
0.91 |
0.81 |
0.3 |
0.84 |
0.92 |
0.92 |
0.82 |
0.97 |
chr1 | 185887306 | 185893334 | chr1:185887306-185893334:-:L1PA2:REF | L1PA2 | REF | full-length | HMCN1 | 0.02 |
0.93 |
0.86 |
0.62 |
0.57 |
0.93 |
0.12 |
0.92 |
0.94 |
0.62 |
0.92 |
0.96 |
chr1 | 186157489 | 186163560 | chr1:186157489-186163560:-:L1PA3:REF | L1PA3 | REF | full-length | HMCN1 | 0.6 |
0.57 |
0.93 |
0.36 |
0.85 |
0.93 |
0.02 |
0.96 |
0.89 |
0.84 |
0.96 |
0.94 |
chr1 | 186256600 | 186262729 | chr1:186256600-186262729:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.09 |
0.96 |
0.84 |
0.93 |
0.86 |
0.79 |
0.43 |
0.79 |
0.93 |
0.6 |
0.84 |
0.96 |
chr1 | 186637331 | 186643356 | chr1:186637331-186643356:+:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.92 |
0.96 |
0.99 |
0.07 |
0.7 |
0.91 |
0.78 |
0.27 |
0.13 |
0.82 |
0.97 |
chr1 | 187090442 | 187090835 | chr1:187090442-187090835:-:L1P1:REF | L1P1 | REF | 3prime-truncated | LINC01036 | 0.31 |
0.71 |
0.65 |
0.79 |
0.75 |
0.68 |
0.58 |
0.87 |
0.94 |
0.72 |
0.82 |
0.99 |
chr1 | 187343764 | 187349794 | chr1:187343764-187349794:-:L1HS:REF | L1HS | REF | full-length | LINC01036 | 0.19 |
0.96 |
0.81 |
0.85 |
0.13 |
0.75 |
0.81 |
0.94 |
0.97 |
0.83 |
0.95 |
0.98 |
chr1 | 187597671 | 187603699 | chr1:187597671-187603699:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.93 |
0.79 |
0.86 |
0.85 |
0.81 |
0.75 |
0.94 |
0.95 |
0.85 |
0.96 |
0.98 |
chr1 | 188752216 | 188758260 | chr1:188752216-188758260:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.97 |
0.89 |
0.95 |
0.16 |
0.77 |
0.78 |
0.9 |
0.96 |
0.91 |
0.89 |
0.98 |
chr1 | 189325284 | 189331428 | chr1:189325284-189331428:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.42 |
0.66 |
0.64 |
0.73 |
0.77 |
0.62 |
0.44 |
0.9 |
0.92 |
0.63 |
0.85 |
0.92 |
chr1 | 189468736 | 189474768 | chr1:189468736-189474768:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.34 |
0.96 |
0.9 |
0.95 |
0.89 |
0.78 |
0.75 |
0.95 |
0.96 |
0.93 |
0.95 |
0.98 |
chr1 | 189754801 | 189760951 | chr1:189754801-189760951:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.88 |
0.85 |
0.82 |
0.82 |
0.7 |
0.79 |
0.95 |
0.93 |
0.87 |
0.98 |
0.92 |
chr1 | 191442810 | 191448889 | chr1:191442810-191448889:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.26 |
0.99 |
0.82 |
0.73 |
0.97 |
0.8 |
0.65 |
0.93 |
0.96 |
0.83 |
0.92 |
0.95 |
chr1 | 192500584 | 192506612 | chr1:192500584-192506612:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.94 |
0.96 |
0.95 |
0.41 |
0.96 |
0.86 |
0.97 |
0.97 |
0.94 |
0.96 |
0.98 |
chr1 | 192662965 | 192669094 | chr1:192662965-192669094:-:L1PA6:REF | L1PA6 | REF | full-length | RGS13 | 0.0 |
0.74 |
0.89 |
0.99 |
0.74 |
0.99 |
0.85 |
0.96 |
0.7 |
0.84 |
0.7 |
0.85 |
chr1 | 193717837 | 193723892 | chr1:193717837-193723892:-:L1HS:REF | L1HS | REF | full-length | — | 0.07 |
0.93 |
0.97 |
0.94 |
0.09 |
0.95 |
0.72 |
0.9 |
0.94 |
0.97 |
0.94 |
0.91 |
chr1 | 196219370 | 196225402 | chr1:196219370-196225402:-:L1HS:REF | L1HS | REF | full-length | KCNT2 | 0.32 |
0.62 |
0.87 |
0.84 |
0.06 |
0.91 |
0.86 |
0.96 |
0.98 |
0.89 |
0.97 |
0.98 |
chr1 | 196780803 | 196786955 | chr1:196780803-196786955:-:L1PA3:REF | L1PA3 | REF | full-length | CFHR3 | — | 0.22 |
0.86 |
0.84 |
— | 0.83 |
0.75 |
— | — | 0.0 |
0.82 |
0.97 |
chr1 | 196817000 | 196818070 | chr1:196817000-196818070:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CFHR1 | 0.08 |
0.54 |
0.53 |
0.42 |
0.46 |
0.56 |
0.26 |
0.6 |
0.94 |
0.61 |
0.6 |
0.95 |
chr1 | 196935962 | 196942099 | chr1:196935962-196942099:-:L1PA6:REF | L1PA6 | REF | full-length | CFHR2 | 0.09 |
0.27 |
0.31 |
0.3 |
0.54 |
0.33 |
0.14 |
0.46 |
0.77 |
0.38 |
0.53 |
0.87 |
chr1 | 196986363 | 196992657 | chr1:196986363-196992657:-:L1PA6:REF | L1PA6 | REF | full-length | CFHR5 | 0.02 |
0.3 |
0.7 |
0.23 |
0.62 |
0.66 |
0.23 |
0.81 |
0.89 |
0.65 |
0.85 |
0.95 |
chr1 | 197707714 | 197713746 | chr1:197707714-197713746:+:L1HS:REF | L1HS | REF | full-length | DENND1B | 0.96 |
0.97 |
0.98 |
0.96 |
0.08 |
0.96 |
0.99 |
0.93 |
0.89 |
0.96 |
0.98 |
0.98 |
chr1 | 197802331 | 197803141 | chr1:197802331-197803141:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.69 |
0.97 |
0.98 |
0.91 |
0.82 |
0.95 |
0.32 |
0.97 |
0.95 |
0.95 |
0.97 |
0.97 |
chr1 | 198309446 | 198315462 | chr1:198309446-198315462:-:L1PA3:REF | L1PA3 | REF | full-length | NEK7 | 0.95 |
0.91 |
0.92 |
0.98 |
0.11 |
0.99 |
0.97 |
0.98 |
0.81 |
0.93 |
0.97 |
0.97 |
chr1 | 199647362 | 199653472 | chr1:199647362-199653472:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.6 |
0.82 |
0.3 |
0.84 |
0.55 |
0.57 |
0.72 |
0.96 |
0.68 |
0.81 |
0.97 |
chr1 | 201234105 | 201240262 | chr1:201234105-201240262:-:L1PA3:REF | L1PA3 | REF | full-length | IGFN1 | 0.02 |
0.93 |
0.91 |
0.69 |
0.9 |
0.82 |
0.83 |
0.84 |
0.93 |
0.93 |
0.84 |
0.92 |
chr1 | 203256484 | 203257899 | chr1:203256484-203257899:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
0.63 |
0.86 |
0.53 |
0.89 |
0.78 |
0.43 |
0.85 |
0.9 |
0.59 |
0.68 |
0.73 |
chr1 | 205400697 | 205406859 | chr1:205400697-205406859:-:L1PA3:REF | L1PA3 | REF | full-length | LEMD1 | 0.18 |
0.92 |
0.98 |
— | 0.93 |
— | 0.77 |
0.86 |
— | 0.9 |
0.78 |
0.55 |
chr1 | 205899308 | 205901278 | chr1:205899308-205901278:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LOC284581 | 0.02 |
0.97 |
0.92 |
0.49 |
0.91 |
0.97 |
0.63 |
0.82 |
0.98 |
0.91 |
0.92 |
0.97 |
chr1 | 207206734 | 207212907 | chr1:207206734-207212907:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.92 |
0.94 |
0.83 |
0.98 |
0.93 |
0.75 |
0.91 |
0.67 |
0.95 |
0.62 |
0.88 |
0.97 |
chr1 | 207730466 | 207736495 | chr1:207730466-207736495:+:L1PA2:REF | L1PA2 | REF | full-length | CR1L | 0.97 |
0.8 |
0.96 |
0.97 |
0.74 |
0.92 |
0.7 |
0.89 |
0.96 |
0.89 |
0.95 |
0.98 |
chr1 | 208702694 | 208709029 | chr1:208702694-208709029:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.85 |
0.84 |
0.34 |
0.89 |
0.82 |
0.44 |
0.75 |
0.92 |
0.6 |
0.71 |
0.86 |
chr1 | 209913771 | 209919823 | chr1:209913771-209919823:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.88 |
0.97 |
0.86 |
0.03 |
0.96 |
0.85 |
0.87 |
0.92 |
0.86 |
0.94 |
0.95 |
chr1 | 209973212 | 209979350 | chr1:209973212-209979350:-:L1PA4:REF | L1PA4 | REF | full-length | SYT14 | 0.01 |
0.57 |
0.79 |
0.54 |
0.76 |
0.86 |
0.39 |
0.74 |
0.8 |
0.55 |
0.83 |
0.63 |
chr1 | 212658025 | 212664183 | chr1:212658025-212664183:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.05 |
0.96 |
0.96 |
0.63 |
0.79 |
0.74 |
0.67 |
0.94 |
0.93 |
0.93 |
0.93 |
0.95 |
chr1 | 213213891 | 213220019 | chr1:213213891-213220019:+:L1PA4:REF | L1PA4 | REF | full-length | RPS6KC1 | 0.97 |
0.99 |
0.97 |
0.92 |
0.98 |
0.99 |
0.99 |
— | 0.98 |
0.97 |
0.98 |
0.9 |
chr1 | 213357935 | 213361681 | chr1:213357935-213361681:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.83 |
0.9 |
0.34 |
0.86 |
0.63 |
0.88 |
0.7 |
0.79 |
0.83 |
0.75 |
0.81 |
chr1 | 213806434 | 213808929 | chr1:213806434-213808929:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.09 |
0.96 |
0.89 |
0.52 |
0.89 |
0.75 |
0.91 |
0.8 |
0.97 |
0.85 |
0.7 |
0.94 |
chr1 | 216485645 | 216487614 | chr1:216485645-216487614:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.53 |
0.91 |
0.69 |
0.33 |
0.63 |
0.77 |
0.7 |
— | 0.81 |
0.67 |
0.97 |
chr1 | 217690492 | 217696523 | chr1:217690492-217696523:-:L1PA2:REF | L1PA2 | REF | full-length | SPATA17 | 0.05 |
0.97 |
0.93 |
0.87 |
0.08 |
0.86 |
0.59 |
0.94 |
0.98 |
0.84 |
0.98 |
0.98 |
chr1 | 218009227 | 218015252 | chr1:218009227-218015252:-:L1HS:REF | L1HS | REF | full-length | — | — | — | — | 0.69 |
0.1 |
0.83 |
— | 0.91 |
— | — | 0.94 |
0.98 |
chr1 | 219839330 | 219845537 | chr1:219839330-219845537:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.81 |
0.94 |
0.98 |
0.9 |
0.21 |
0.85 |
0.26 |
0.9 |
0.73 |
0.66 |
0.93 |
0.96 |
chr1 | 219863570 | 219869595 | chr1:219863570-219869595:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.82 |
0.91 |
0.96 |
0.77 |
0.66 |
0.7 |
0.77 |
0.81 |
0.93 |
0.94 |
0.78 |
0.96 |
chr1 | 220245155 | 220246008 | chr1:220245155-220246008:+:L1HS:REF | L1HS | REF | 3prime-truncated | RAB3GAP2 | 0.97 |
0.99 |
0.98 |
0.98 |
0.07 |
0.99 |
0.99 |
0.98 |
0.78 |
0.98 |
0.99 |
0.94 |
chr1 | 220860329 | 220864396 | chr1:220860329-220864396:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | HLX-AS1 | 0.01 |
0.48 |
0.77 |
0.61 |
0.81 |
0.52 |
0.74 |
0.49 |
0.66 |
— | 0.24 |
0.92 |
chr1 | 221383064 | 221389208 | chr1:221383064-221389208:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.23 |
0.83 |
0.97 |
0.89 |
0.9 |
0.05 |
0.81 |
0.92 |
0.63 |
0.93 |
0.9 |
chr1 | 223366542 | 223372687 | chr1:223366542-223372687:-:L1PA3:REF | L1PA3 | REF | full-length | SUSD4 | — | — | 0.93 |
0.56 |
0.91 |
— | 0.61 |
— | — | 0.71 |
0.77 |
0.97 |
chr1 | 223395534 | 223401557 | chr1:223395534-223401557:-:L1PA2:REF | L1PA2 | REF | full-length | CCDC185 | 0.87 |
0.99 |
0.98 |
0.96 |
0.21 |
0.96 |
0.89 |
0.98 |
0.93 |
0.95 |
0.98 |
0.98 |
chr1 | 223446992 | 223453023 | chr1:223446992-223453023:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.13 |
0.93 |
0.89 |
— | 0.89 |
0.83 |
0.72 |
— | — | 0.78 |
0.85 |
0.79 |