Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 65462002 | 65468172 | chr1:65462002-65468172:-:L1PA6:REF | L1PA6 | REF | full-length | LEPR | 0.76 |
0.69 |
0.95 |
0.88 |
0.9 |
0.97 |
0.53 |
0.95 |
0.9 |
0.87 |
0.97 |
0.97 |
chr1 | 65544806 | 65550970 | chr1:65544806-65550970:-:L1PA3:REF | L1PA3 | REF | full-length | LEPR | 0.86 |
0.75 |
0.87 |
0.78 |
0.29 |
0.75 |
0.87 |
0.79 |
0.48 |
0.85 |
0.8 |
0.88 |
chr1 | 65558564 | 65564576 | chr1:65558564-65564576:-:L1PA2:REF | L1PA2 | REF | full-length | LEPR | 0.97 |
0.93 |
0.91 |
0.75 |
0.11 |
0.94 |
0.85 |
0.87 |
0.77 |
0.31 |
0.91 |
0.99 |
chr1 | 66199807 | 66204996 | chr1:66199807-66204996:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | PDE4B | 0.0 |
0.46 |
0.95 |
0.97 |
0.88 |
0.8 |
0.7 |
0.91 |
0.96 |
0.84 |
0.72 |
0.96 |
chr1 | 66480923 | 66486952 | chr1:66480923-66486952:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.74 |
0.87 |
0.93 |
0.25 |
0.87 |
0.89 |
0.93 |
0.9 |
0.12 |
0.98 |
0.89 |
chr1 | 66780142 | 66786326 | chr1:66780142-66786326:+:L1PA4:REF | L1PA4 | REF | full-length | TCTEX1D1 | 0.07 |
0.62 |
0.94 |
0.47 |
0.88 |
0.81 |
0.51 |
0.77 |
0.96 |
0.95 |
0.92 |
0.97 |
chr1 | 67078891 | 67084915 | chr1:67078891-67084915:-:L1HS:REF | L1HS | REF | full-length | C1orf141 | 0.85 |
0.94 |
0.95 |
0.86 |
0.28 |
0.9 |
0.92 |
0.95 |
0.98 |
0.87 |
0.97 |
0.97 |
chr1 | 67176638 | 67182776 | chr1:67176638-67182776:-:L1PA4:REF | L1PA4 | REF | full-length | IL23R | 0.49 |
0.91 |
0.71 |
0.36 |
0.81 |
0.61 |
0.29 |
0.75 |
0.81 |
0.64 |
0.68 |
0.9 |
chr1 | 68736693 | 68740136 | chr1:68736693-68740136:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.64 |
0.89 |
0.72 |
0.12 |
0.81 |
0.75 |
0.81 |
0.95 |
0.56 |
— | 0.98 |
chr1 | 68875777 | 68881805 | chr1:68875777-68881805:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.62 |
0.88 |
0.17 |
0.1 |
0.74 |
0.67 |
0.8 |
0.85 |
0.01 |
0.78 |
0.98 |
chr1 | 68923486 | 68926929 | chr1:68923486-68926929:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.05 |
— | 0.9 |
— | 0.51 |
— | 0.78 |
— | — | 0.75 |
0.86 |
0.98 |
chr1 | 69117059 | 69120511 | chr1:69117059-69120511:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | LINC01707 | 0.01 |
0.84 |
0.98 |
0.86 |
0.13 |
0.86 |
0.7 |
0.88 |
0.77 |
0.79 |
0.87 |
0.99 |
chr1 | 69389449 | 69395594 | chr1:69389449-69395594:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.14 |
0.34 |
0.83 |
0.1 |
0.89 |
0.59 |
0.32 |
0.71 |
0.94 |
0.08 |
0.57 |
0.95 |
chr1 | 69882613 | 69888643 | chr1:69882613-69888643:-:L1PA2:REF | L1PA2 | REF | full-length | LRRC7 | 0.01 |
— | — | — | 0.16 |
— | 0.77 |
0.85 |
— | 0.54 |
0.84 |
— |
chr1 | 69905264 | 69911348 | chr1:69905264-69911348:-:L1PA4:REF | L1PA4 | REF | full-length | LRRC7 | 0.04 |
0.64 |
0.89 |
0.2 |
0.86 |
0.73 |
0.46 |
0.82 |
0.98 |
0.64 |
0.74 |
0.95 |
chr1 | 69922813 | 69928952 | chr1:69922813-69928952:-:L1PA3:REF | L1PA3 | REF | full-length | LRRC7 | 0.04 |
0.83 |
0.91 |
0.96 |
0.87 |
0.92 |
0.85 |
0.91 |
0.86 |
0.67 |
0.84 |
— |
chr1 | 71888203 | 71894235 | chr1:71888203-71894235:+:L1PA2:REF | L1PA2 | REF | full-length | NEGR1 | 0.02 |
0.55 |
0.87 |
0.73 |
0.08 |
0.96 |
0.78 |
0.95 |
0.9 |
0.65 |
0.92 |
0.98 |
chr1 | 72898768 | 72900480 | chr1:72898768-72900480:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | — | 0.09 |
0.5 |
0.89 |
0.32 |
0.06 |
0.83 |
0.86 |
0.79 |
0.94 |
0.38 |
0.81 |
0.98 |
chr1 | 74877120 | 74883155 | chr1:74877120-74883155:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.54 |
0.73 |
0.36 |
0.76 |
0.66 |
0.36 |
0.74 |
0.89 |
0.63 |
0.68 |
0.98 |
chr1 | 74986518 | 74992624 | chr1:74986518-74992624:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.43 |
0.46 |
0.08 |
0.86 |
0.36 |
0.22 |
0.42 |
0.89 |
0.64 |
0.37 |
0.95 |
chr1 | 75375826 | 75377085 | chr1:75375826-75377085:+:L1PA2:REF | L1PA2 | REF | 3prime-truncated | SLC44A5 | 0.03 |
0.9 |
0.82 |
0.66 |
0.06 |
0.59 |
0.34 |
0.62 |
0.73 |
0.01 |
0.61 |
0.52 |
chr1 | 75476261 | 75482430 | chr1:75476261-75482430:+:L1PA3:REF | L1PA3 | REF | full-length | SLC44A5 | 0.91 |
0.71 |
0.96 |
0.28 |
0.88 |
0.72 |
0.82 |
0.72 |
0.98 |
0.84 |
0.65 |
0.98 |
chr1 | 75677750 | 75683758 | chr1:75677750-75683758:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.9 |
0.91 |
0.78 |
— | 0.63 |
0.01 |
0.75 |
0.79 |
0.27 |
0.81 |
0.98 |
chr1 | 75697639 | 75703674 | chr1:75697639-75703674:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.62 |
— | 0.88 |
0.71 |
0.71 |
0.76 |
0.79 |
0.79 |
0.97 |
0.81 |
0.69 |
0.98 |
chr1 | 75777591 | 75783742 | chr1:75777591-75783742:+:L1PA4:REF | L1PA4 | REF | full-length | RABGGTB | 0.89 |
1.0 |
0.93 |
0.9 |
0.87 |
0.91 |
0.88 |
0.96 |
0.97 |
0.87 |
0.94 |
0.98 |
chr1 | 76739649 | 76742106 | chr1:76739649-76742106:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.01 |
0.8 |
0.88 |
0.11 |
0.89 |
0.65 |
— | 0.57 |
0.95 |
0.74 |
0.63 |
0.97 |
chr1 | 77000000 | 77005515 | chr1:77000000-77005515:-:L1HS:REF | L1HS | REF | 3prime-truncated | ST6GALNAC5 | 0.03 |
0.92 |
0.91 |
0.49 |
0.2 |
0.91 |
0.84 |
0.8 |
0.92 |
0.88 |
0.91 |
0.97 |
chr1 | 78607699 | 78613730 | chr1:78607699-78613730:+:L1PA6:REF | L1PA6 | REF | full-length | IFI44L | 0.0 |
— | 0.69 |
— | — | — | 0.4 |
0.79 |
— | 0.66 |
— | — |
chr1 | 78698954 | 78699378 | chr1:78698954-78699378:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.4 |
0.44 |
0.32 |
0.76 |
0.77 |
0.03 |
0.86 |
0.71 |
0.49 |
0.92 |
0.8 |
chr1 | 78845456 | 78851474 | chr1:78845456-78851474:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.93 |
0.8 |
0.92 |
0.76 |
0.95 |
0.68 |
0.94 |
0.96 |
0.84 |
0.97 |
0.98 |
chr1 | 79414188 | 79420301 | chr1:79414188-79420301:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | 0.74 |
0.72 |
0.63 |
0.86 |
0.76 |
0.58 |
0.82 |
0.96 |
0.77 |
0.89 |
0.94 |
chr1 | 79511261 | 79517280 | chr1:79511261-79517280:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.82 |
0.92 |
0.66 |
0.3 |
0.84 |
0.78 |
0.92 |
0.95 |
0.85 |
0.93 |
0.98 |
chr1 | 79888611 | 79894731 | chr1:79888611-79894731:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.4 |
0.52 |
0.08 |
0.78 |
0.89 |
0.02 |
0.95 |
0.7 |
0.81 |
0.93 |
0.95 |
chr1 | 79938402 | 79944419 | chr1:79938402-79944419:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | — | — | — | 0.91 |
0.87 |
0.59 |
— | — | 0.83 |
0.96 |
0.98 |
chr1 | 80132548 | 80138577 | chr1:80132548-80138577:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.73 |
0.91 |
0.44 |
0.64 |
0.75 |
0.5 |
0.85 |
0.89 |
0.88 |
0.89 |
0.97 |
chr1 | 80394348 | 80400494 | chr1:80394348-80400494:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.97 |
0.91 |
0.51 |
0.77 |
0.79 |
0.65 |
0.86 |
0.89 |
0.88 |
0.93 |
0.94 |
chr1 | 80939203 | 80945257 | chr1:80939203-80945257:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.95 |
0.91 |
— | 0.38 |
0.78 |
0.84 |
— | 0.95 |
0.93 |
0.81 |
0.98 |
chr1 | 82130929 | 82136890 | chr1:82130929-82136890:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.98 |
0.98 |
0.81 |
0.09 |
0.93 |
0.85 |
0.92 |
0.89 |
0.86 |
0.94 |
0.99 |
chr1 | 82250044 | 82256069 | chr1:82250044-82256069:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.94 |
0.82 |
0.53 |
0.61 |
0.6 |
0.75 |
0.71 |
0.97 |
0.81 |
0.74 |
0.93 |
chr1 | 83167420 | 83173581 | chr1:83167420-83173581:+:L1PA4:REF | L1PA4 | REF | full-length | LINC01362 | — | — | — | — | 0.24 |
0.2 |
0.07 |
0.17 |
— | 0.19 |
0.13 |
0.28 |
chr1 | 83182174 | 83188201 | chr1:83182174-83188201:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.97 |
0.96 |
0.68 |
0.07 |
0.94 |
0.32 |
0.91 |
0.65 |
0.09 |
0.85 |
0.98 |
chr1 | 83263607 | 83269631 | chr1:83263607-83269631:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.95 |
0.89 |
0.78 |
0.1 |
0.9 |
0.75 |
0.89 |
0.73 |
0.91 |
0.88 |
0.98 |
chr1 | 83350413 | 83356465 | chr1:83350413-83356465:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.97 |
0.92 |
0.67 |
0.59 |
0.87 |
0.8 |
0.75 |
0.96 |
0.94 |
0.75 |
0.82 |
chr1 | 84052389 | 84058406 | chr1:84052389-84058406:-:L1HS:REF | L1HS | REF | full-length | — | 0.7 |
— | 0.97 |
— | — | 0.94 |
— | — | — | 0.94 |
— | — |
chr1 | 84228930 | 84234940 | chr1:84228930-84234940:-:L1PA3:REF | L1PA3 | REF | full-length | PRKACB | 0.6 |
0.27 |
0.97 |
0.9 |
0.92 |
0.99 |
0.95 |
0.93 |
0.98 |
0.96 |
0.98 |
0.99 |
chr1 | 85508351 | 85514542 | chr1:85508351-85514542:+:L1PA6:REF | L1PA6 | REF | full-length | DDAH1 | 0.0 |
0.93 |
0.98 |
0.47 |
0.9 |
0.95 |
0.61 |
0.96 |
0.95 |
0.86 |
0.95 |
0.95 |
chr1 | 85641866 | 85648021 | chr1:85641866-85648021:+:L1PA3:REF | L1PA3 | REF | full-length | ZNHIT6 | 0.96 |
0.01 |
0.97 |
0.98 |
0.74 |
0.99 |
0.36 |
0.96 |
0.95 |
0.97 |
0.99 |
0.99 |
chr1 | 85748519 | 85754548 | chr1:85748519-85754548:+:L1HS:REF | L1HS | REF | full-length | COL24A1 | 0.02 |
0.9 |
0.85 |
0.8 |
0.06 |
0.89 |
0.93 |
0.92 |
0.95 |
0.86 |
0.97 |
0.95 |
chr1 | 85824940 | 85830944 | chr1:85824940-85830944:-:L1PA3:REF | L1PA3 | REF | full-length | COL24A1 | 0.01 |
0.0 |
0.96 |
0.66 |
0.87 |
0.92 |
0.53 |
0.87 |
0.98 |
0.81 |
0.72 |
0.98 |
chr1 | 85920984 | 85921431 | chr1:85920984-85921431:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | COL24A1 | 0.0 |
0.64 |
0.16 |
0.03 |
0.8 |
0.52 |
0.03 |
0.77 |
0.87 |
0.15 |
0.86 |
0.93 |