Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1 | 164459203 | 164465253 | chr1:164459203-164465253:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.81 |
0.96 |
0.81 |
0.14 |
0.86 |
0.74 |
0.83 |
0.94 |
0.9 |
0.85 |
0.97 |
chr1 | 165778069 | 165784153 | chr1:165778069-165784153:-:L1PA4:REF | L1PA4 | REF | full-length | TMCO1-AS1 | 0.65 |
0.77 |
0.92 |
0.86 |
0.91 |
0.84 |
0.92 |
0.88 |
0.95 |
0.71 |
0.9 |
0.98 |
chr1 | 165801132 | 165801791 | chr1:165801132-165801791:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.19 |
0.92 |
0.91 |
0.6 |
0.86 |
0.76 |
0.38 |
0.82 |
0.92 |
0.7 |
0.86 |
0.96 |
chr1 | 166100204 | 166106364 | chr1:166100204-166106364:+:L1PA4:REF | L1PA4 | REF | full-length | FAM78B | 0.0 |
0.83 |
0.77 |
0.19 |
0.75 |
0.56 |
0.26 |
0.55 |
0.91 |
0.35 |
0.62 |
0.59 |
chr1 | 166243053 | 166249084 | chr1:166243053-166249084:-:L1HS:REF | L1HS | REF | full-length | — | 0.05 |
0.52 |
0.91 |
0.77 |
0.12 |
0.8 |
0.85 |
0.84 |
0.85 |
0.59 |
0.81 |
0.57 |
chr1 | 166310878 | 166317027 | chr1:166310878-166317027:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.3 |
0.57 |
0.08 |
0.85 |
0.5 |
0.05 |
0.56 |
0.88 |
0.23 |
0.47 |
0.46 |
chr1 | 166411299 | 166417438 | chr1:166411299-166417438:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.23 |
0.58 |
0.09 |
0.79 |
0.37 |
0.23 |
0.39 |
0.76 |
0.07 |
0.39 |
0.35 |
chr1 | 168348862 | 168354879 | chr1:168348862-168354879:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.77 |
0.92 |
0.98 |
0.96 |
0.04 |
0.93 |
0.01 |
0.92 |
0.93 |
0.65 |
0.91 |
0.98 |
chr1 | 169251561 | 169257591 | chr1:169251561-169257591:-:L1PA2:REF | L1PA2 | REF | full-length | NME7 | 0.86 |
0.98 |
0.97 |
0.98 |
0.83 |
0.98 |
0.94 |
0.9 |
0.97 |
0.96 |
0.9 |
0.98 |
chr1 | 169275508 | 169279839 | chr1:169275508-169279839:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | NME7 | 0.86 |
0.96 |
0.97 |
0.97 |
0.89 |
0.98 |
0.94 |
0.98 |
0.95 |
0.93 |
0.96 |
0.99 |
chr1 | 169655961 | 169661033 | chr1:169655961-169661033:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
0.61 |
0.87 |
0.17 |
0.9 |
0.76 |
0.79 |
0.6 |
0.86 |
0.87 |
0.76 |
0.53 |
chr1 | 170089171 | 170095201 | chr1:170089171-170095201:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.13 |
0.88 |
0.8 |
0.2 |
0.94 |
0.32 |
0.91 |
0.95 |
0.42 |
0.83 |
0.92 |
chr1 | 170568879 | 170575370 | chr1:170568879-170575370:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.91 |
0.84 |
0.48 |
0.94 |
0.9 |
0.63 |
0.82 |
0.94 |
0.87 |
0.91 |
0.95 |
chr1 | 170612496 | 170614981 | chr1:170612496-170614981:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.64 |
0.94 |
0.35 |
0.98 |
1.0 |
0.12 |
0.95 |
1.0 |
0.85 |
0.96 |
1.0 |
chr1 | 171373586 | 171379567 | chr1:171373586-171379567:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
— | 0.98 |
0.45 |
0.13 |
0.95 |
0.94 |
0.91 |
0.81 |
0.42 |
0.96 |
0.04 |
chr1 | 171694693 | 171696421 | chr1:171694693-171696421:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | VAMP4 | 0.77 |
0.74 |
0.93 |
0.91 |
0.88 |
0.94 |
0.86 |
0.99 |
0.94 |
0.91 |
0.98 |
0.99 |
chr1 | 172055829 | 172061861 | chr1:172055829-172061861:+:L1PA3:REF | L1PA3 | REF | full-length | DNM3 | 0.01 |
0.08 |
0.98 |
0.93 |
0.71 |
0.95 |
0.65 |
0.97 |
0.94 |
0.89 |
0.97 |
0.98 |
chr1 | 172314246 | 172320395 | chr1:172314246-172320395:+:L1PA3:REF | L1PA3 | REF | full-length | DNM3 | 0.01 |
0.92 |
0.88 |
0.88 |
0.9 |
0.92 |
0.31 |
0.93 |
0.96 |
0.9 |
0.96 |
0.96 |
chr1 | 172981279 | 172987306 | chr1:172981279-172987306:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.78 |
0.8 |
0.77 |
0.6 |
0.84 |
0.71 |
0.97 |
0.82 |
0.51 |
0.87 |
0.97 |
chr1 | 173153744 | 173159905 | chr1:173153744-173159905:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.25 |
0.47 |
0.7 |
0.9 |
0.9 |
0.46 |
— | 0.99 |
0.06 |
0.95 |
0.97 |
chr1 | 173725764 | 173731872 | chr1:173725764-173731872:+:L1PA4:REF | L1PA4 | REF | full-length | KLHL20 | 0.99 |
0.96 |
0.97 |
0.97 |
0.9 |
0.98 |
0.96 |
0.97 |
0.98 |
0.95 |
0.99 |
0.99 |
chr1 | 173811694 | 173816857 | chr1:173811694-173816857:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | CENPL | — | 0.92 |
0.95 |
— | 0.96 |
1.0 |
1.0 |
1.0 |
— | 0.96 |
0.95 |
0.98 |
chr1 | 174233266 | 174239293 | chr1:174233266-174239293:-:L1PA2:REF | L1PA2 | REF | full-length | RABGAP1L | 0.95 |
0.01 |
0.95 |
0.95 |
0.02 |
0.98 |
0.95 |
0.98 |
0.73 |
0.01 |
0.98 |
0.44 |
chr1 | 174377791 | 174383815 | chr1:174377791-174383815:-:L1PA2:REF | L1PA2 | REF | full-length | RABGAP1L | 0.95 |
0.87 |
0.97 |
0.97 |
0.13 |
0.98 |
0.95 |
0.97 |
0.96 |
0.95 |
0.98 |
0.99 |
chr1 | 174541788 | 174545718 | chr1:174541788-174545718:-:L1PA5:REF | L1PA5 | REF | 3prime-truncated | RABGAP1L | 0.71 |
0.99 |
0.97 |
0.91 |
0.89 |
0.91 |
1.0 |
0.96 |
0.95 |
0.93 |
0.93 |
0.99 |
chr1 | 174590323 | 174596379 | chr1:174590323-174596379:-:L1HS:REF | L1HS | REF | full-length | RABGAP1L | 0.75 |
0.97 |
0.97 |
0.91 |
0.05 |
0.93 |
0.97 |
0.92 |
0.92 |
0.95 |
0.96 |
0.98 |
chr1 | 174610057 | 174616228 | chr1:174610057-174616228:-:L1PA3:REF | L1PA3 | REF | full-length | RABGAP1L | 0.71 |
0.94 |
0.95 |
0.83 |
0.9 |
0.93 |
0.96 |
0.91 |
0.95 |
0.9 |
0.95 |
0.98 |
chr1 | 174843226 | 174849243 | chr1:174843226-174849243:-:L1PA2:REF | L1PA2 | REF | full-length | RABGAP1L | 0.01 |
0.24 |
0.91 |
0.9 |
0.12 |
0.97 |
0.49 |
0.93 |
0.65 |
0.01 |
0.98 |
0.01 |
chr1 | 175992256 | 175998501 | chr1:175992256-175998501:+:L1PA3:REF | L1PA3 | REF | full-length | COP1 | 0.98 |
0.97 |
0.96 |
0.98 |
0.96 |
0.98 |
0.98 |
0.99 |
0.97 |
0.98 |
0.99 |
0.99 |
chr1 | 176002354 | 176008367 | chr1:176002354-176008367:-:L1PA2:REF | L1PA2 | REF | full-length | COP1 | 0.97 |
0.98 |
0.98 |
0.98 |
0.87 |
0.98 |
0.99 |
0.99 |
0.98 |
0.97 |
0.96 |
0.99 |
chr1 | 176256085 | 176262110 | chr1:176256085-176262110:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.08 |
0.94 |
0.95 |
0.94 |
0.12 |
0.89 |
0.84 |
0.9 |
0.94 |
0.91 |
0.89 |
0.97 |
chr1 | 176295052 | 176297228 | chr1:176295052-176297228:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | — | 0.26 |
0.21 |
0.91 |
0.34 |
0.06 |
0.31 |
— | 0.04 |
0.22 |
0.48 |
chr1 | 176308395 | 176314388 | chr1:176308395-176314388:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.06 |
0.92 |
0.85 |
0.87 |
0.03 |
0.78 |
0.84 |
0.8 |
0.91 |
0.5 |
0.72 |
0.92 |
chr1 | 177400917 | 177406941 | chr1:177400917-177406941:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.47 |
0.97 |
0.67 |
0.88 |
0.83 |
0.8 |
0.89 |
0.97 |
0.84 |
0.88 |
0.9 |
chr1 | 177633927 | 177639946 | chr1:177633927-177639946:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.97 |
0.83 |
0.44 |
0.24 |
0.71 |
0.8 |
0.8 |
0.86 |
0.28 |
0.73 |
0.78 |
chr1 | 177671810 | 177677946 | chr1:177671810-177677946:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.96 |
0.73 |
0.25 |
0.83 |
0.62 |
0.67 |
0.73 |
0.92 |
0.34 |
0.6 |
0.74 |
chr1 | 177759403 | 177765545 | chr1:177759403-177765545:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.81 |
0.73 |
0.74 |
0.91 |
0.86 |
0.78 |
0.78 |
0.85 |
0.5 |
0.84 |
0.77 |
chr1 | 178314791 | 178320818 | chr1:178314791-178320818:-:L1PA2:REF | L1PA2 | REF | full-length | RASAL2 | 0.15 |
0.97 |
0.32 |
0.97 |
0.1 |
0.84 |
0.98 |
0.94 |
0.58 |
0.54 |
0.58 |
0.98 |
chr1 | 178837547 | 178843666 | chr1:178837547-178843666:+:L1PA2:REF | L1PA2 | REF | full-length | RALGPS2 | 0.03 |
0.85 |
0.84 |
0.84 |
0.83 |
0.84 |
0.85 |
0.84 |
0.82 |
0.82 |
0.85 |
0.85 |
chr1 | 178987591 | 178993573 | chr1:178987591-178993573:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.95 |
0.91 |
0.78 |
0.89 |
0.78 |
0.4 |
0.82 |
0.93 |
0.84 |
0.83 |
0.96 |
chr1 | 179460043 | 179466249 | chr1:179460043-179466249:-:L1PA5:REF | L1PA5 | REF | full-length | AXDND1 | 0.01 |
0.89 |
0.71 |
0.23 |
0.79 |
0.64 |
0.2 |
0.63 |
0.9 |
0.42 |
0.6 |
0.97 |
chr1 | 179606225 | 179606227 | chr1:179606225-179606227:-:L1HS:NONREF | L1HS | KNR | — | TDRD5 | 0.08 |
0.9 |
0.95 |
0.87 |
0.05 |
— | — | — | 0.89 |
0.82 |
0.8 |
— |
chr1 | 179694053 | 179700429 | chr1:179694053-179700429:+:L1PA7:REF | L1PA7 | REF | full-length | TDRD5 | 0.0 |
1.0 |
0.78 |
0.08 |
0.93 |
0.21 |
0.03 |
0.1 |
— | 0.36 |
0.25 |
0.9 |
chr1 | 180333571 | 180339694 | chr1:180333571-180339694:+:L1PA5:REF | L1PA5 | REF | full-length | ACBD6 | 0.97 |
0.62 |
0.97 |
— | 0.94 |
0.98 |
0.99 |
0.96 |
0.97 |
0.97 |
0.97 |
0.98 |
chr1 | 180866811 | 180872843 | chr1:180866811-180872843:-:L1HS:REF | L1HS | REF | full-length | XPR1 | 0.91 |
0.95 |
0.97 |
0.98 |
0.08 |
0.94 |
0.98 |
0.87 |
0.66 |
0.97 |
0.96 |
0.95 |
chr1 | 181882227 | 181886068 | chr1:181882227-181886068:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.08 |
0.07 |
0.7 |
0.12 |
0.8 |
0.39 |
0.03 |
0.41 |
0.87 |
0.04 |
0.52 |
0.76 |
chr1 | 183658067 | 183664223 | chr1:183658067-183664223:+:L1PA3:REF | L1PA3 | REF | full-length | RGL1 | 0.18 |
0.08 |
0.97 |
0.79 |
0.9 |
0.97 |
0.97 |
0.95 |
0.98 |
0.91 |
0.99 |
0.49 |
chr1 | 183748695 | 183752008 | chr1:183748695-183752008:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | RGL1 | 0.0 |
0.72 |
0.82 |
— | 0.77 |
0.78 |
0.93 |
0.74 |
0.88 |
0.76 |
0.88 |
0.86 |
chr1 | 184130573 | 184136757 | chr1:184130573-184136757:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.82 |
— | 0.12 |
0.89 |
0.85 |
0.27 |
0.92 |
0.95 |
0.69 |
0.93 |
0.96 |
chr1 | 184231780 | 184235388 | chr1:184231780-184235388:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.97 |
0.84 |
0.13 |
0.9 |
0.85 |
0.21 |
0.93 |
0.94 |
0.76 |
0.93 |
0.94 |