Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX | 50019456 | 50025505 | chrX:50019456-50025505:-:L1HS:REF | L1HS | REF | full-length | CLCN5 | 0.51 |
0.92 |
0.81 |
0.96 |
0.03 |
0.94 |
0.96 |
0.69 |
0.87 |
0.24 |
0.97 |
0.98 |
chrX | 50060143 | 50066175 | chrX:50060143-50066175:+:L1PA2:REF | L1PA2 | REF | full-length | CLCN5 | 0.55 |
0.91 |
0.74 |
0.97 |
0.36 |
0.96 |
0.98 |
0.74 |
0.89 |
0.88 |
0.97 |
0.98 |
chrX | 50296102 | 50302279 | chrX:50296102-50302279:-:L1PA4:REF | L1PA4 | REF | full-length | CCNB3 | 0.04 |
0.68 |
0.64 |
0.06 |
0.91 |
0.43 |
0.47 |
0.68 |
0.86 |
0.5 |
0.61 |
0.9 |
chrX | 51018802 | 51021520 | chrX:51018802-51021520:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | 0.29 |
0.25 |
— | 0.2 |
0.0 |
0.36 |
— | 0.0 |
0.19 |
— |
chrX | 51124934 | 51127864 | chrX:51124934-51127864:+:L1P3:REF | L1P3 | REF | 3prime-truncated | LINC01284 | 0.0 |
0.52 |
0.35 |
0.13 |
0.85 |
— | 0.17 |
0.66 |
— | 0.28 |
0.38 |
0.41 |
chrX | 51262091 | 51268161 | chrX:51262091-51268161:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.46 |
0.57 |
0.68 |
0.79 |
0.73 |
0.73 |
0.71 |
0.84 |
0.63 |
0.73 |
0.88 |
chrX | 51427448 | 51433599 | chrX:51427448-51433599:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.83 |
0.81 |
0.64 |
0.95 |
0.83 |
0.74 |
0.74 |
0.84 |
0.84 |
0.81 |
0.93 |
chrX | 51512321 | 51518344 | chrX:51512321-51518344:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01496 | 0.15 |
0.88 |
0.84 |
0.81 |
0.89 |
0.88 |
0.52 |
0.89 |
0.96 |
0.82 |
0.89 |
0.96 |
chrX | 51531585 | 51537594 | chrX:51531585-51537594:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.88 |
0.67 |
0.68 |
0.84 |
— | 0.74 |
0.84 |
— | 0.72 |
0.85 |
0.91 |
chrX | 51623141 | 51629261 | chrX:51623141-51629261:+:L1PA5:REF | L1PA5 | REF | full-length | CENPVL3 | 0.0 |
0.08 |
0.43 |
0.02 |
0.89 |
0.59 |
0.02 |
0.55 |
0.93 |
0.14 |
0.67 |
0.56 |
chrX | 51644758 | 51650770 | chrX:51644758-51650770:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.07 |
0.68 |
0.77 |
0.59 |
0.92 |
0.86 |
0.83 |
0.81 |
0.95 |
0.72 |
0.87 |
0.98 |
chrX | 51991320 | 51997421 | chrX:51991320-51997421:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.86 |
0.72 |
0.55 |
0.88 |
0.78 |
0.66 |
0.79 |
0.97 |
0.58 |
0.82 |
0.82 |
chrX | 52111122 | 52117265 | chrX:52111122-52117265:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.49 |
0.23 |
0.09 |
0.84 |
0.46 |
0.28 |
0.49 |
0.77 |
0.13 |
0.5 |
0.19 |
chrX | 52145326 | 52151280 | chrX:52145326-52151280:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.78 |
0.77 |
0.17 |
0.89 |
0.71 |
0.93 |
0.76 |
0.98 |
0.54 |
0.85 |
0.58 |
chrX | 52222105 | 52228125 | chrX:52222105-52228125:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.67 |
0.87 |
0.74 |
0.35 |
0.85 |
0.88 |
0.81 |
0.91 |
0.76 |
0.88 |
0.92 |
chrX | 52291785 | 52297932 | chrX:52291785-52297932:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.48 |
0.32 |
0.15 |
0.83 |
0.52 |
0.75 |
0.54 |
0.86 |
0.27 |
0.54 |
0.42 |
chrX | 52550771 | 52553226 | chrX:52550771-52553226:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.0 |
0.12 |
0.68 |
0.22 |
0.91 |
0.8 |
0.51 |
0.64 |
0.95 |
0.35 |
0.47 |
0.56 |
chrX | 54052897 | 54053244 | chrX:54052897-54053244:-:L1P1:REF | L1P1 | REF | 3prime-truncated | PHF8 | 0.35 |
0.93 |
0.8 |
0.94 |
0.91 |
0.97 |
0.93 |
0.79 |
0.93 |
0.62 |
0.96 |
0.98 |
chrX | 54118685 | 54124744 | chrX:54118685-54124744:-:L1HS:REF | L1HS | REF | full-length | FAM120C | 0.54 |
0.83 |
0.76 |
0.9 |
0.38 |
0.76 |
0.92 |
0.81 |
— | 0.75 |
0.9 |
0.92 |
chrX | 54142115 | 54143166 | chrX:54142115-54143166:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | FAM120C | 0.07 |
— | 0.7 |
— | 0.65 |
— | — | 0.82 |
— | 0.73 |
— | — |
chrX | 54765705 | 54770404 | chrX:54765705-54770404:-:L1PA2:REF | L1PA2 | REF | 3prime-truncated | ITIH6 | 0.38 |
0.97 |
0.87 |
0.89 |
0.08 |
0.86 |
0.94 |
0.78 |
0.9 |
0.21 |
0.91 |
0.97 |
chrX | 54853945 | 54860101 | chrX:54853945-54860101:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.64 |
0.41 |
0.09 |
0.86 |
0.67 |
0.18 |
0.62 |
0.82 |
0.24 |
0.54 |
0.73 |
chrX | 54878587 | 54883219 | chrX:54878587-54883219:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.02 |
0.59 |
0.48 |
0.61 |
0.86 |
0.64 |
0.84 |
0.55 |
0.85 |
0.52 |
0.67 |
0.96 |
chrX | 55297654 | 55303790 | chrX:55297654-55303790:-:L1PA5:REF | L1PA5 | REF | full-length | LOC100421746 | 0.02 |
0.42 |
0.39 |
0.03 |
0.85 |
0.57 |
0.03 |
0.51 |
0.76 |
0.06 |
0.57 |
0.75 |
chrX | 55343685 | 55345200 | chrX:55343685-55345200:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.08 |
— | 0.25 |
0.37 |
0.86 |
0.8 |
0.44 |
0.64 |
0.8 |
0.24 |
0.64 |
0.87 |
chrX | 55396514 | 55402659 | chrX:55396514-55402659:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | 0.49 |
0.55 |
0.47 |
0.87 |
0.62 |
0.37 |
0.56 |
— | 0.36 |
0.61 |
0.81 |
chrX | 55768921 | 55775044 | chrX:55768921-55775044:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.38 |
0.63 |
0.43 |
0.98 |
0.79 |
0.95 |
0.89 |
0.62 |
0.91 |
0.59 |
0.94 |
0.98 |
chrX | 55845760 | 55851917 | chrX:55845760-55851917:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.86 |
0.27 |
0.19 |
0.85 |
0.58 |
0.62 |
0.46 |
0.64 |
0.06 |
0.59 |
1.0 |
chrX | 55936391 | 55942528 | chrX:55936391-55942528:+:L1PA4:REF | L1PA4 | REF | full-length | KLF8 | 0.01 |
0.71 |
0.67 |
0.31 |
0.86 |
0.86 |
0.52 |
0.7 |
0.86 |
0.17 |
0.8 |
0.99 |
chrX | 56047265 | 56053280 | chrX:56047265-56053280:-:L1PA4:REF | L1PA4 | REF | full-length | KLF8 | 0.02 |
0.02 |
0.85 |
— | 0.37 |
0.91 |
0.72 |
0.72 |
0.87 |
0.4 |
0.88 |
0.96 |
chrX | 56157403 | 56162912 | chrX:56157403-56162912:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | KLF8 | 0.0 |
0.84 |
0.29 |
0.16 |
0.88 |
0.67 |
0.04 |
0.59 |
0.73 |
0.1 |
0.66 |
0.86 |
chrX | 56324965 | 56331139 | chrX:56324965-56331139:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.34 |
— | — | — | — | — | — | 0.28 |
0.71 |
— |
chrX | 56352616 | 56358769 | chrX:56352616-56358769:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.39 |
0.08 |
0.03 |
0.83 |
0.23 |
0.01 |
0.41 |
0.79 |
0.01 |
0.44 |
0.85 |
chrX | 56419862 | 56421784 | chrX:56419862-56421784:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | — | — | 0.1 |
— | 0.59 |
— | — | — | — | 0.01 |
— | — |
chrX | 56424059 | 56430208 | chrX:56424059-56430208:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.01 |
0.7 |
0.18 |
— | 0.79 |
0.32 |
0.47 |
0.35 |
0.57 |
0.24 |
0.31 |
0.75 |
chrX | 56452108 | 56452609 | chrX:56452108-56452609:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.03 |
0.84 |
0.43 |
0.4 |
0.86 |
0.6 |
0.27 |
0.6 |
0.83 |
0.28 |
0.72 |
0.93 |
chrX | 56581519 | 56587672 | chrX:56581519-56587672:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.46 |
0.88 |
0.8 |
0.85 |
0.79 |
0.86 |
0.98 |
0.85 |
0.86 |
0.77 |
0.86 |
0.99 |
chrX | 56695884 | 56701916 | chrX:56695884-56701916:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.94 |
0.75 |
0.72 |
0.08 |
0.82 |
0.91 |
0.69 |
0.89 |
0.69 |
0.82 |
0.98 |
chrX | 56831130 | 56833137 | chrX:56831130-56833137:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
0.6 |
0.33 |
0.0 |
0.81 |
0.59 |
0.03 |
0.42 |
0.82 |
0.28 |
0.61 |
0.91 |
chrX | 56839829 | 56842321 | chrX:56839829-56842321:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.02 |
0.8 |
0.35 |
0.22 |
0.81 |
0.67 |
0.51 |
0.51 |
0.88 |
0.18 |
0.72 |
0.94 |
chrX | 56893931 | 56900071 | chrX:56893931-56900071:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.51 |
0.12 |
0.01 |
0.84 |
0.38 |
0.03 |
0.42 |
0.64 |
0.02 |
0.43 |
0.91 |
chrX | 56915290 | 56921294 | chrX:56915290-56921294:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.03 |
0.74 |
— | 0.1 |
0.87 |
0.36 |
0.42 |
0.37 |
— | 0.1 |
0.55 |
0.95 |
chrX | 57048916 | 57052126 | chrX:57048916-57052126:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.03 |
0.81 |
0.76 |
0.5 |
0.89 |
0.58 |
0.85 |
0.54 |
0.85 |
0.04 |
0.71 |
0.96 |
chrX | 57087583 | 57091137 | chrX:57087583-57091137:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.54 |
0.84 |
0.43 |
0.96 |
0.88 |
0.97 |
0.96 |
0.79 |
0.96 |
0.7 |
0.97 |
0.95 |
chrX | 57157849 | 57163886 | chrX:57157849-57163886:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.37 |
0.68 |
0.72 |
0.96 |
0.62 |
0.94 |
0.97 |
0.72 |
0.85 |
0.71 |
0.97 |
0.98 |
chrX | 57270540 | 57275268 | chrX:57270540-57275268:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
0.9 |
0.53 |
0.81 |
— | 0.5 |
0.27 |
0.66 |
— | 0.16 |
0.77 |
— |
chrX | 57467124 | 57472422 | chrX:57467124-57472422:+:L1P1:REF | L1P1 | REF | 3prime-truncated | FAAH2 | 0.0 |
0.92 |
0.42 |
0.63 |
0.9 |
0.45 |
0.49 |
0.43 |
0.8 |
0.43 |
0.48 |
0.95 |
chrX | 57564936 | 57567078 | chrX:57564936-57567078:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | 0.02 |
0.88 |
— | 0.37 |
0.89 |
0.66 |
0.55 |
0.7 |
0.86 |
0.48 |
0.73 |
0.88 |
chrX | 57629388 | 57635409 | chrX:57629388-57635409:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.07 |
0.92 |
0.79 |
0.84 |
0.94 |
0.92 |
0.94 |
0.87 |
0.88 |
0.64 |
0.92 |
0.93 |
chrX | 57708529 | 57714653 | chrX:57708529-57714653:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.67 |
0.5 |
0.57 |
0.91 |
0.62 |
0.3 |
0.71 |
0.83 |
0.23 |
0.67 |
0.84 |