Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17 | 71351959 | 71357889 | chr17:71351959-71357889:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.55 |
0.94 |
0.67 |
0.94 |
0.9 |
0.47 |
0.94 |
0.92 |
0.91 |
0.95 |
0.95 |
chr18 | 535701 | 541755 | chr18:535701-541755:+:L1HS:REF | L1HS | REF | full-length | — | 0.22 |
0.68 |
0.89 |
0.73 |
0.15 |
0.81 |
0.8 |
0.84 |
0.75 |
0.83 |
0.81 |
0.83 |
chr18 | 970858 | 976878 | chr18:970858-976878:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.97 |
0.89 |
0.86 |
0.05 |
0.8 |
0.84 |
0.82 |
0.79 |
0.65 |
0.84 |
0.94 |
chr18 | 1029349 | 1035439 | chr18:1029349-1035439:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.26 |
0.82 |
0.68 |
0.41 |
0.62 |
0.3 |
0.01 |
0.35 |
0.91 |
0.08 |
0.38 |
0.82 |
chr18 | 1516189 | 1522240 | chr18:1516189-1522240:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.05 |
0.61 |
0.82 |
0.73 |
0.05 |
0.72 |
0.77 |
0.77 |
0.98 |
0.36 |
0.79 |
0.92 |
chr18 | 2247167 | 2253196 | chr18:2247167-2253196:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.87 |
0.87 |
0.94 |
0.97 |
0.08 |
0.92 |
0.88 |
0.85 |
0.92 |
0.7 |
0.98 |
0.98 |
chr18 | 2860237 | 2866343 | chr18:2860237-2866343:-:L1PA4:REF | L1PA4 | REF | full-length | EMILIN2 | 0.7 |
0.95 |
0.94 |
0.67 |
0.9 |
0.94 |
0.63 |
0.81 |
0.94 |
0.93 |
0.87 |
0.95 |
chr18 | 4477329 | 4478177 | chr18:4477329-4478177:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.61 |
0.79 |
0.64 |
0.17 |
0.74 |
0.53 |
0.76 |
0.93 |
0.64 |
0.79 |
0.74 |
chr18 | 5004136 | 5010155 | chr18:5004136-5010155:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.03 |
0.04 |
0.86 |
0.02 |
0.13 |
0.01 |
0.09 |
0.02 |
0.01 |
0.08 |
0.95 |
chr18 | 5122003 | 5128135 | chr18:5122003-5128135:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.03 |
0.45 |
0.04 |
0.74 |
0.21 |
0.01 |
0.14 |
0.74 |
0.02 |
0.09 |
0.1 |
chr18 | 5684668 | 5687891 | chr18:5684668-5687891:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.23 |
0.87 |
0.43 |
0.21 |
0.72 |
0.75 |
0.78 |
0.9 |
0.88 |
0.75 |
0.74 |
chr18 | 7966442 | 7972474 | chr18:7966442-7972474:+:L1PA2:REF | L1PA2 | REF | full-length | PTPRM | 0.01 |
0.68 |
0.97 |
0.98 |
0.19 |
0.97 |
0.98 |
0.97 |
0.95 |
0.97 |
0.99 |
0.98 |
chr18 | 8057452 | 8063463 | chr18:8057452-8063463:-:L1PA2:REF | L1PA2 | REF | full-length | PTPRM | 0.02 |
0.72 |
0.95 |
0.97 |
0.14 |
0.9 |
0.58 |
0.96 |
— | 0.88 |
0.94 |
0.04 |
chr18 | 9982522 | 9983275 | chr18:9982522-9983275:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.02 |
— | — | — | — | — | 0.45 |
— | — | — | 0.72 |
— |
chr18 | 10572668 | 10578678 | chr18:10572668-10578678:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.65 |
0.39 |
— | — | 0.69 |
— | 0.95 |
0.98 |
— | 0.93 |
0.98 |
— |
chr18 | 12139659 | 12141450 | chr18:12139659-12141450:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | ANKRD62 | 0.16 |
0.83 |
0.93 |
0.58 |
0.79 |
0.77 |
0.83 |
0.83 |
0.94 |
0.9 |
0.79 |
0.9 |
chr18 | 12181637 | 12187780 | chr18:12181637-12187780:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.06 |
0.47 |
0.71 |
0.7 |
0.81 |
0.62 |
0.71 |
— | — | 0.67 |
0.66 |
0.91 |
chr18 | 12202444 | 12208458 | chr18:12202444-12208458:-:L1PA2:REF | L1PA2 | REF | full-length | C18orf61 | 0.07 |
0.62 |
0.96 |
0.56 |
0.19 |
0.89 |
0.86 |
0.89 |
0.93 |
0.88 |
0.81 |
0.98 |
chr18 | 12491262 | 12491264 | chr18:12491262-12491264:+:L1HS:NONREF | L1HS | KNR | — | SPIRE1 | — | — | — | — | — | — | 0.98 |
— | — | — | — | — |
chr18 | 13343089 | 13349218 | chr18:13343089-13349218:-:L1PA4:REF | L1PA4 | REF | full-length | LDLRAD4 | 0.01 |
0.98 |
0.94 |
0.42 |
0.91 |
0.84 |
0.92 |
0.78 |
0.96 |
0.67 |
0.72 |
0.87 |
chr18 | 13975860 | 13981891 | chr18:13975860-13981891:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.92 |
0.91 |
0.79 |
0.22 |
0.77 |
0.86 |
0.82 |
0.91 |
0.84 |
0.77 |
0.86 |
chr18 | 14002455 | 14006946 | chr18:14002455-14006946:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.96 |
0.67 |
0.35 |
0.79 |
0.54 |
0.27 |
0.57 |
0.86 |
0.47 |
0.59 |
— |
chr18 | 14037597 | 14043715 | chr18:14037597-14043715:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.93 |
0.56 |
0.07 |
— | — | 0.4 |
0.63 |
0.86 |
— | 0.59 |
0.84 |
chr18 | 14064986 | 14071100 | chr18:14064986-14071100:+:L1PA5:REF | L1PA5 | REF | full-length | ZNF519 | 0.0 |
0.97 |
0.87 |
0.57 |
0.71 |
0.64 |
0.76 |
0.94 |
0.94 |
0.81 |
0.79 |
0.97 |
chr18 | 14162672 | 14168081 | chr18:14162672-14168081:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.84 |
0.9 |
0.76 |
0.89 |
0.58 |
0.32 |
0.69 |
0.79 |
0.57 |
0.68 |
0.81 |
chr18 | 14988441 | 14988956 | chr18:14988441-14988956:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
— | 0.72 |
0.21 |
0.92 |
0.49 |
0.48 |
0.46 |
— | — | 0.64 |
0.6 |
chr18 | 15193133 | 15193135 | chr18:15193133-15193135:-:L1HS:NONREF | L1HS | UNKNR | — | — | — | — | — | — | 0.22 |
— | 0.75 |
— | 0.77 |
— | — | — |
chr18 | 15229094 | 15235249 | chr18:15229094-15235249:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.37 |
0.42 |
0.13 |
0.8 |
0.49 |
0.04 |
0.59 |
0.78 |
0.17 |
0.58 |
0.57 |
chr18 | 21882938 | 21889079 | chr18:21882938-21889079:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.96 |
0.9 |
0.77 |
0.86 |
0.69 |
0.68 |
0.71 |
0.92 |
0.92 |
0.75 |
0.97 |
chr18 | 22529636 | 22535670 | chr18:22529636-22535670:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.33 |
0.96 |
0.98 |
0.93 |
0.14 |
0.92 |
0.85 |
0.94 |
0.94 |
0.93 |
0.95 |
0.96 |
chr18 | 22748310 | 22749834 | chr18:22748310-22749834:+:L1P3:REF | L1P3 | REF | 3prime-truncated | LOC101927571 | 0.01 |
0.94 |
0.96 |
0.94 |
0.92 |
0.82 |
0.6 |
0.89 |
0.97 |
0.92 |
0.89 |
0.98 |
chr18 | 22885395 | 22891520 | chr18:22885395-22891520:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.78 |
0.95 |
0.95 |
0.93 |
0.91 |
0.83 |
0.96 |
0.95 |
0.94 |
0.91 |
0.94 |
chr18 | 24619042 | 24625072 | chr18:24619042-24625072:-:L1PA2:REF | L1PA2 | REF | full-length | LINC01915 | 0.03 |
0.91 |
0.95 |
0.75 |
0.2 |
0.92 |
0.66 |
0.96 |
0.92 |
0.87 |
0.97 |
0.87 |
chr18 | 25266452 | 25272922 | chr18:25266452-25272922:+:L1PA7:REF | L1PA7 | REF | full-length | ZNF521 | 0.12 |
— | — | 0.55 |
— | — | 0.56 |
— | — | — | 0.6 |
0.54 |
chr18 | 27279551 | 27285578 | chr18:27279551-27285578:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.52 |
0.9 |
0.55 |
0.91 |
0.72 |
0.56 |
0.73 |
0.97 |
0.92 |
0.72 |
0.95 |
chr18 | 27510008 | 27516039 | chr18:27510008-27516039:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.36 |
— | — | 0.06 |
0.66 |
0.02 |
— | — | 0.7 |
0.75 |
— |
chr18 | 27737726 | 27743750 | chr18:27737726-27743750:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.78 |
0.96 |
0.6 |
0.45 |
0.89 |
0.72 |
0.88 |
0.95 |
0.94 |
0.89 |
0.99 |
chr18 | 28240443 | 28246440 | chr18:28240443-28246440:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.87 |
0.98 |
0.91 |
0.06 |
— | 0.93 |
0.91 |
0.97 |
0.96 |
0.92 |
0.94 |
chr18 | 28416544 | 28422561 | chr18:28416544-28422561:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.4 |
0.97 |
0.9 |
0.08 |
0.84 |
0.85 |
0.89 |
0.96 |
0.89 |
0.87 |
0.99 |
chr18 | 31347968 | 31353996 | chr18:31347968-31353996:-:L1PA2:REF | L1PA2 | REF | full-length | DSG1 | 0.04 |
0.87 |
0.88 |
0.84 |
0.52 |
0.67 |
0.96 |
0.79 |
0.86 |
0.86 |
0.63 |
0.93 |
chr18 | 32228075 | 32233934 | chr18:32228075-32233934:-:L1PA3:REF | L1PA3 | REF | full-length | MEP1B | — | 0.87 |
0.85 |
0.9 |
0.93 |
0.77 |
0.83 |
0.9 |
0.95 |
0.83 |
0.88 |
0.93 |
chr18 | 32856626 | 32862684 | chr18:32856626-32862684:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.48 |
0.88 |
0.81 |
0.04 |
0.8 |
0.9 |
0.82 |
0.85 |
0.51 |
0.82 |
0.85 |
chr18 | 34331115 | 34337159 | chr18:34331115-34337159:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.29 |
0.95 |
0.64 |
0.07 |
0.77 |
0.58 |
0.82 |
0.84 |
0.88 |
0.83 |
0.91 |
chr18 | 34552378 | 34558395 | chr18:34552378-34558395:-:L1PA2:REF | L1PA2 | REF | full-length | DTNA | 0.01 |
0.68 |
0.97 |
0.83 |
0.68 |
0.79 |
0.96 |
0.88 |
0.96 |
0.97 |
0.87 |
0.39 |
chr18 | 34894774 | 34900928 | chr18:34894774-34900928:+:L1PA3:REF | L1PA3 | REF | full-length | DTNA | 0.03 |
0.96 |
0.95 |
0.81 |
0.88 |
0.78 |
0.98 |
0.91 |
0.97 |
0.9 |
0.92 |
0.97 |
chr18 | 35205779 | 35211809 | chr18:35205779-35211809:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.83 |
0.97 |
0.97 |
0.95 |
0.22 |
0.91 |
0.95 |
0.95 |
0.97 |
0.96 |
0.95 |
0.99 |
chr18 | 35760308 | 35766412 | chr18:35760308-35766412:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.35 |
0.14 |
0.88 |
0.4 |
0.91 |
0.88 |
0.9 |
0.86 |
0.86 |
0.87 |
0.9 |
0.95 |
chr18 | 35790620 | 35796748 | chr18:35790620-35796748:+:L1PA5:REF | L1PA5 | REF | full-length | — | — | — | — | — | — | — | 0.57 |
— | — | 0.86 |
0.72 |
— |
chr18 | 36235134 | 36241152 | chr18:36235134-36241152:-:L1PA3:REF | L1PA3 | REF | full-length | MOCOS | — | — | 0.98 |
— | 0.74 |
0.9 |
0.99 |
0.95 |
— | 0.94 |
0.95 |
0.97 |
chr18 | 37218553 | 37219963 | chr18:37218553-37219963:-:L1P2:REF | L1P2 | REF | 3prime-truncated | KIAA1328 | 0.03 |
— | — | 0.27 |
0.59 |
— | 0.67 |
— | — | 0.5 |
0.66 |
— |