Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20 | 11632779 | 11638837 | chr20:11632779-11638837:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.91 |
0.92 |
0.91 |
0.11 |
0.79 |
0.74 |
0.83 |
0.91 |
0.71 |
0.85 |
0.9 |
chr20 | 12123711 | 12129700 | chr20:12123711-12129700:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.93 |
— | 0.42 |
0.7 |
0.54 |
— | — | 0.29 |
0.62 |
0.76 |
chr20 | 12443116 | 12449140 | chr20:12443116-12449140:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.03 |
0.69 |
0.76 |
0.85 |
0.77 |
0.82 |
0.68 |
0.85 |
0.93 |
0.39 |
0.78 |
0.85 |
chr20 | 12582507 | 12588531 | chr20:12582507-12588531:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.86 |
0.86 |
0.74 |
0.75 |
0.7 |
0.7 |
0.7 |
0.9 |
0.54 |
0.74 |
0.76 |
chr20 | 12801017 | 12807044 | chr20:12801017-12807044:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.73 |
0.8 |
0.74 |
0.45 |
0.75 |
0.67 |
0.7 |
0.87 |
0.63 |
0.69 |
0.69 |
chr20 | 13052072 | 13053986 | chr20:13052072-13053986:+:L1P3:REF | L1P3 | REF | 3prime-truncated | SPTLC3 | — | 0.98 |
0.93 |
— | 0.91 |
0.68 |
0.98 |
0.82 |
— | 0.33 |
0.88 |
— |
chr20 | 16519714 | 16522903 | chr20:16519714-16522903:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | KIF16B | 0.89 |
0.64 |
0.98 |
0.86 |
0.68 |
0.82 |
0.8 |
0.78 |
0.77 |
0.91 |
0.9 |
0.8 |
chr20 | 17114790 | 17120918 | chr20:17114790-17120918:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.67 |
0.74 |
0.44 |
0.78 |
0.58 |
0.38 |
0.63 |
0.79 |
0.39 |
0.61 |
0.81 |
chr20 | 18332912 | 18339088 | chr20:18332912-18339088:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.25 |
0.9 |
0.98 |
0.77 |
0.81 |
0.94 |
0.86 |
0.8 |
0.9 |
— | 0.83 |
0.9 |
chr20 | 18755270 | 18761370 | chr20:18755270-18761370:-:L1PA4:REF | L1PA4 | REF | full-length | DTD1 | 0.33 |
0.97 |
0.96 |
0.94 |
0.93 |
0.96 |
0.96 |
0.97 |
0.95 |
0.93 |
0.97 |
0.99 |
chr20 | 18935844 | 18942312 | chr20:18935844-18942312:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.05 |
0.9 |
0.8 |
0.0 |
0.88 |
0.62 |
0.05 |
0.64 |
0.91 |
0.05 |
0.38 |
0.82 |
chr20 | 21887655 | 21893685 | chr20:21887655-21893685:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.56 |
0.7 |
0.5 |
0.6 |
0.68 |
0.69 |
0.76 |
0.79 |
0.39 |
0.5 |
0.72 |
chr20 | 21910853 | 21916881 | chr20:21910853-21916881:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.26 |
0.91 |
0.64 |
0.22 |
0.71 |
0.63 |
0.7 |
0.88 |
0.25 |
0.68 |
0.81 |
chr20 | 22009432 | 22015596 | chr20:22009432-22015596:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.71 |
0.75 |
0.08 |
0.85 |
0.44 |
0.47 |
0.45 |
0.87 |
0.3 |
0.46 |
0.26 |
chr20 | 22040464 | 22046614 | chr20:22040464-22046614:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01432 | — | — | — | — | 0.67 |
0.72 |
0.79 |
— | — | 0.78 |
0.67 |
0.74 |
chr20 | 22114636 | 22119281 | chr20:22114636-22119281:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.02 |
0.39 |
0.05 |
0.3 |
0.57 |
0.36 |
0.33 |
0.0 |
0.05 |
0.32 |
0.27 |
chr20 | 22194131 | 22200273 | chr20:22194131-22200273:+:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.15 |
0.51 |
0.07 |
0.92 |
0.33 |
0.08 |
0.49 |
0.87 |
0.08 |
0.4 |
0.26 |
chr20 | 23426108 | 23432140 | chr20:23426108-23432140:+:L1HS:REF | L1HS | REF | full-length | NAPB | 0.78 |
0.82 |
0.93 |
— | 0.15 |
— | 0.8 |
— | 0.94 |
0.2 |
0.92 |
0.94 |
chr20 | 23589308 | 23595311 | chr20:23589308-23595311:+:L1PA2:REF | L1PA2 | REF | full-length | CST9 | 0.27 |
0.97 |
0.95 |
0.79 |
0.3 |
0.82 |
0.98 |
0.85 |
0.79 |
0.93 |
0.93 |
0.92 |
chr20 | 23896851 | 23903006 | chr20:23896851-23903006:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.93 |
0.9 |
0.21 |
0.58 |
0.8 |
0.3 |
0.68 |
0.9 |
0.61 |
0.67 |
0.78 |
chr20 | 24900605 | 24906618 | chr20:24900605-24906618:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.81 |
0.89 |
0.22 |
0.87 |
0.63 |
0.3 |
0.67 |
0.88 |
0.56 |
0.66 |
0.79 |
chr20 | 24921723 | 24927909 | chr20:24921723-24927909:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.71 |
0.85 |
0.48 |
0.9 |
0.72 |
0.74 |
0.8 |
— | 0.51 |
0.69 |
0.62 |
chr20 | 25165636 | 25170195 | chr20:25165636-25170195:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.01 |
0.75 |
0.89 |
0.78 |
0.88 |
0.69 |
0.87 |
0.78 |
0.88 |
0.54 |
0.63 |
0.94 |
chr20 | 25719827 | 25720867 | chr20:25719827-25720867:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.1 |
0.95 |
0.97 |
0.91 |
0.89 |
0.73 |
0.97 |
0.67 |
0.92 |
0.96 |
0.88 |
0.98 |
chr20 | 26233677 | 26239735 | chr20:26233677-26239735:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.89 |
0.95 |
0.66 |
0.71 |
0.81 |
0.73 |
0.77 |
0.92 |
0.88 |
0.81 |
0.94 |
chr20 | 29366059 | 29372220 | chr20:29366059-29372220:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.24 |
0.04 |
0.14 |
0.58 |
0.23 |
0.03 |
0.23 |
0.35 |
0.13 |
0.25 |
0.31 |
chr20 | 29466155 | 29472288 | chr20:29466155-29472288:-:L1PA4:REF | L1PA4 | REF | full-length | FRG1EP | 0.6 |
0.34 |
0.72 |
0.17 |
0.91 |
0.69 |
0.26 |
0.76 |
0.8 |
0.23 |
0.64 |
0.84 |
chr20 | 30944115 | 30950140 | chr20:30944115-30950140:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.7 |
0.65 |
0.36 |
0.81 |
0.62 |
0.48 |
0.67 |
0.78 |
0.5 |
0.6 |
0.76 |
chr20 | 30970455 | 30976471 | chr20:30970455-30976471:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.67 |
— | — | 0.71 |
0.5 |
0.07 |
0.62 |
— | 0.59 |
0.51 |
0.68 |
chr20 | 30985455 | 30991464 | chr20:30985455-30991464:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.93 |
0.92 |
0.6 |
0.93 |
0.77 |
0.64 |
0.77 |
0.92 |
0.91 |
0.78 |
0.94 |
chr20 | 31332715 | 31338865 | chr20:31332715-31338865:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.36 |
0.68 |
0.18 |
0.9 |
0.53 |
0.56 |
0.57 |
0.85 |
0.26 |
0.53 |
0.69 |
chr20 | 39977475 | 39977785 | chr20:39977475-39977785:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.0 |
0.98 |
0.94 |
— | 0.94 |
0.88 |
0.61 |
0.85 |
0.94 |
0.9 |
0.8 |
0.88 |
chr20 | 40619322 | 40625356 | chr20:40619322-40625356:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.04 |
0.95 |
0.9 |
0.64 |
0.07 |
0.81 |
0.52 |
0.82 |
0.86 |
0.39 |
0.84 |
0.94 |
chr20 | 42206269 | 42212317 | chr20:42206269-42212317:+:L1PA2:REF | L1PA2 | REF | full-length | PTPRT | 0.1 |
0.85 |
0.91 |
0.64 |
0.59 |
0.82 |
0.78 |
0.8 |
0.9 |
0.7 |
0.81 |
0.81 |
chr20 | 42614937 | 42620967 | chr20:42614937-42620967:-:L1PA2:REF | L1PA2 | REF | full-length | PTPRT | 0.02 |
0.73 |
0.82 |
0.59 |
0.71 |
0.64 |
0.75 |
0.77 |
0.87 |
0.46 |
0.78 |
0.79 |
chr20 | 43814461 | 43820491 | chr20:43814461-43820491:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.96 |
0.95 |
0.77 |
0.49 |
0.88 |
0.81 |
0.89 |
0.96 |
0.84 |
0.93 |
0.97 |
chr20 | 45660033 | 45666559 | chr20:45660033-45666559:-:L1PA3:REF | L1PA3 | REF | full-length | WFDC11 | 0.01 |
0.95 |
0.74 |
0.42 |
0.95 |
0.54 |
0.52 |
0.68 |
0.92 |
0.71 |
0.59 |
0.97 |
chr20 | 45687891 | 45693981 | chr20:45687891-45693981:-:L1PA3:REF | L1PA3 | REF | full-length | WFDC10B | 0.01 |
0.97 |
0.96 |
0.79 |
0.94 |
0.8 |
0.78 |
0.82 |
0.95 |
0.81 |
0.83 |
0.95 |
chr20 | 48587113 | 48591591 | chr20:48587113-48591591:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.35 |
0.92 |
0.95 |
0.76 |
0.91 |
0.84 |
0.83 |
0.86 |
0.96 |
0.94 |
0.86 |
0.84 |
chr20 | 48976983 | 48983133 | chr20:48976983-48983133:-:L1PA6:REF | L1PA6 | REF | full-length | ARFGEF2 | — | — | — | — | — | — | 0.99 |
— | — | — | — | — |
chr20 | 53455562 | 53461566 | chr20:53455562-53461566:-:L1PA3:REF | L1PA3 | REF | full-length | TSHZ2 | 0.09 |
0.85 |
0.87 |
0.75 |
0.88 |
0.77 |
0.94 |
0.84 |
0.95 |
0.93 |
0.85 |
0.96 |
chr20 | 53472644 | 53478653 | chr20:53472644-53478653:+:L1PA2:REF | L1PA2 | REF | full-length | TSHZ2 | 0.33 |
0.95 |
0.96 |
0.72 |
0.9 |
0.82 |
0.89 |
0.84 |
0.98 |
0.93 |
0.88 |
0.93 |
chr20 | 53503851 | 53509874 | chr20:53503851-53509874:+:L1PA2:REF | L1PA2 | REF | full-length | TSHZ2 | 0.09 |
0.26 |
0.95 |
0.81 |
0.02 |
0.85 |
0.31 |
0.85 |
0.75 |
0.43 |
0.88 |
0.52 |
chr20 | 54782510 | 54788349 | chr20:54782510-54788349:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.01 |
0.05 |
0.57 |
0.23 |
0.81 |
0.62 |
0.32 |
0.65 |
0.88 |
0.11 |
0.58 |
0.58 |
chr20 | 55220304 | 55226469 | chr20:55220304-55226469:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.11 |
0.5 |
0.33 |
0.75 |
0.43 |
0.04 |
0.45 |
0.77 |
0.03 |
0.35 |
— |
chr20 | 55859566 | 55865521 | chr20:55859566-55865521:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.54 |
0.83 |
0.68 |
0.87 |
— | — | — | 0.89 |
chr20 | 55900229 | 55906399 | chr20:55900229-55906399:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.0 |
0.17 |
0.49 |
0.2 |
0.9 |
0.58 |
0.4 |
0.6 |
0.87 |
0.21 |
0.6 |
0.45 |
chr20 | 56336480 | 56338612 | chr20:56336480-56338612:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.01 |
0.41 |
0.45 |
0.1 |
0.89 |
0.31 |
0.25 |
0.4 |
0.69 |
0.1 |
0.29 |
0.22 |
chr20 | 59531777 | 59537803 | chr20:59531777-59537803:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.06 |
0.74 |
0.75 |
— | 0.78 |
— | 0.7 |
0.78 |
— | 0.6 |
0.65 |
0.81 |
chr20 | 61397396 | 61397400 | chr20:61397396-61397400:+:L1HS:NONREF | L1HS | KNR | — | CDH4 | — | — | — | — | — | — | 0.91 |
— | — | — | 0.96 |
— |