Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16 | 9584490 | 9590522 | chr16:9584490-9590522:-:L1HS:REF | L1HS | REF | full-length | — | 0.36 |
0.53 |
0.91 |
0.7 |
0.16 |
0.76 |
0.85 |
0.77 |
0.94 |
0.63 |
0.79 |
0.91 |
chr16 | 16840517 | 16846556 | chr16:16840517-16846556:-:L1HS:REF | L1HS | REF | full-length | — | — | — | — | 0.55 |
0.4 |
0.86 |
— | 0.85 |
0.91 |
— | 0.87 |
0.91 |
chr16 | 32587481 | 32588397 | chr16:32587481-32588397:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.84 |
0.75 |
0.24 |
0.8 |
0.54 |
0.26 |
0.52 |
0.77 |
0.16 |
0.55 |
0.63 |
chr16 | 33952564 | 33958612 | chr16:33952564-33958612:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.9 |
0.81 |
0.69 |
0.86 |
0.8 |
0.86 |
0.75 |
0.91 |
0.65 |
0.78 |
0.89 |
chr16 | 34118474 | 34119193 | chr16:34118474-34119193:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.0 |
0.35 |
0.42 |
0.02 |
0.59 |
0.18 |
0.21 |
0.13 |
— | 0.17 |
0.27 |
0.34 |
chr16 | 35608475 | 35614501 | chr16:35608475-35614501:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.65 |
0.52 |
— | 0.84 |
0.6 |
— | — | — | 0.28 |
0.67 |
0.59 |
chr16 | 54042096 | 54048145 | chr16:54042096-54048145:+:L1HS:REF | L1HS | REF | full-length | FTO | 0.78 |
0.94 |
0.9 |
0.75 |
0.64 |
0.95 |
0.91 |
0.99 |
0.84 |
0.9 |
0.86 |
0.94 |
chr16 | 65690011 | 65696020 | chr16:65690011-65696020:+:L1HS:REF | L1HS | REF | full-length | — | 0.15 |
0.97 |
0.95 |
0.64 |
0.49 |
0.94 |
0.78 |
0.94 |
0.97 |
— | 0.9 |
0.91 |
chr16 | 68583448 | 68589505 | chr16:68583448-68589505:-:L1HS:REF | L1HS | REF | full-length | ZFP90 | 0.12 |
0.97 |
0.96 |
0.88 |
0.12 |
0.87 |
0.92 |
0.82 |
0.91 |
0.94 |
0.84 |
0.98 |
chr16 | 80727089 | 80730717 | chr16:80727089-80730717:+:L1HS:REF | L1HS | REF | 3prime-truncated | CDYL2 | 0.01 |
0.01 |
0.97 |
0.02 |
0.93 |
0.91 |
0.71 |
0.86 |
0.93 |
0.77 |
0.95 |
0.63 |
chr16 | 83637252 | 83643296 | chr16:83637252-83643296:+:L1HS:REF | L1HS | REF | full-length | CDH13 | 0.06 |
0.24 |
0.96 |
0.78 |
0.1 |
0.88 |
0.83 |
0.95 |
0.88 |
0.6 |
0.97 |
0.83 |
chr17 | 9615985 | 9622015 | chr17:9615985-9622015:+:L1HS:REF | L1HS | REF | full-length | CFAP52 | 0.12 |
0.97 |
0.95 |
0.88 |
0.1 |
0.85 |
0.91 |
0.84 |
0.89 |
0.92 |
0.8 |
0.96 |
chr17 | 34808392 | 34808394 | chr17:34808392-34808394:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.91 |
— | — | — | — | — | 0.4 |
— | — | — | — |
chr17 | 66596579 | 66602595 | chr17:66596579-66602595:-:L1HS:REF | L1HS | REF | full-length | PRKCA | 0.86 |
0.95 |
0.97 |
0.98 |
0.24 |
0.98 |
0.98 |
0.97 |
0.86 |
0.59 |
0.99 |
0.97 |
chr17 | 66641175 | 66641180 | chr17:66641175-66641180:+:L1HS:NONREF | L1HS | KNR | — | PRKCA | 0.99 |
0.98 |
0.98 |
— | — | — | 0.99 |
— | 0.96 |
0.97 |
— | — |
chr17 | 69000000 | 69005148 | chr17:69000000-69005148:-:L1HS:REF | L1HS | REF | 3prime-truncated | ABCA9 | 0.85 |
0.74 |
0.92 |
0.88 |
0.23 |
0.88 |
0.91 |
0.87 |
0.84 |
0.88 |
0.9 |
0.98 |
chr17 | 70361267 | 70361269 | chr17:70361267-70361269:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.85 |
0.97 |
— | — | 0.76 |
0.85 |
— | — | 0.97 |
— | 0.93 |
chr17 | 70458956 | 70464987 | chr17:70458956-70464987:+:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.77 |
0.92 |
0.9 |
0.58 |
0.84 |
0.85 |
0.92 |
— | 0.95 |
0.96 |
0.94 |
chr17 | 70544788 | 70550795 | chr17:70544788-70550795:-:L1HS:REF | L1HS | REF | full-length | — | — | — | 0.9 |
— | 0.56 |
0.83 |
0.78 |
0.93 |
— | 0.9 |
0.95 |
0.85 |
chr18 | 535701 | 541755 | chr18:535701-541755:+:L1HS:REF | L1HS | REF | full-length | — | 0.22 |
0.68 |
0.89 |
0.73 |
0.15 |
0.81 |
0.8 |
0.84 |
0.75 |
0.83 |
0.81 |
0.83 |
chr18 | 4477329 | 4478177 | chr18:4477329-4478177:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.61 |
0.79 |
0.64 |
0.17 |
0.74 |
0.53 |
0.76 |
0.93 |
0.64 |
0.79 |
0.74 |
chr18 | 5684668 | 5687891 | chr18:5684668-5687891:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.23 |
0.87 |
0.43 |
0.21 |
0.72 |
0.75 |
0.78 |
0.9 |
0.88 |
0.75 |
0.74 |
chr18 | 12491262 | 12491264 | chr18:12491262-12491264:+:L1HS:NONREF | L1HS | KNR | — | SPIRE1 | — | — | — | — | — | — | 0.98 |
— | — | — | — | — |
chr18 | 13975860 | 13981891 | chr18:13975860-13981891:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.92 |
0.91 |
0.79 |
0.22 |
0.77 |
0.86 |
0.82 |
0.91 |
0.84 |
0.77 |
0.86 |
chr18 | 15095247 | 15095249 | chr18:15095247-15095249:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.7 |
chr18 | 15193133 | 15193135 | chr18:15193133-15193135:-:L1HS:NONREF | L1HS | UNKNR | — | — | — | — | — | — | 0.22 |
— | 0.75 |
— | 0.77 |
— | — | — |
chr18 | 37819737 | 37825798 | chr18:37819737-37825798:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.8 |
0.83 |
0.69 |
0.07 |
0.79 |
0.75 |
0.8 |
0.85 |
0.7 |
0.82 |
0.81 |
chr18 | 41775014 | 41781045 | chr18:41775014-41781045:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.82 |
0.94 |
0.92 |
0.19 |
0.86 |
0.83 |
0.9 |
0.92 |
0.72 |
0.83 |
0.87 |
chr18 | 42316969 | 42316971 | chr18:42316969-42316971:-:L1HS:NONREF | L1HS | KNR | — | LINC00907 | — | — | — | — | — | — | — | 0.83 |
— | — | — | — |
chr18 | 44021279 | 44024826 | chr18:44021279-44024826:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.79 |
0.86 |
0.46 |
0.85 |
0.86 |
0.66 |
0.83 |
0.89 |
0.58 |
0.9 |
0.57 |
chr18 | 47660373 | 47666427 | chr18:47660373-47666427:+:L1HS:REF | L1HS | REF | full-length | — | 0.15 |
0.96 |
0.91 |
0.61 |
0.54 |
0.79 |
0.89 |
0.86 |
0.93 |
0.76 |
0.82 |
0.88 |
chr18 | 50343959 | 50349987 | chr18:50343959-50349987:-:L1HS:REF | L1HS | REF | full-length | — | 0.69 |
0.91 |
0.93 |
0.82 |
0.08 |
0.75 |
0.88 |
0.86 |
0.94 |
0.92 |
0.87 |
0.98 |
chr18 | 51689847 | 51689849 | chr18:51689847-51689849:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.72 |
— | — | — | — | — | — | 0.36 |
— | — |
chr18 | 53899354 | 53899356 | chr18:53899354-53899356:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.62 |
— | — | — | — | — | — | — | — |
chr18 | 61512674 | 61515526 | chr18:61512674-61515526:-:L1HS:REF | L1HS | REF | 3prime-truncated | CDH20 | — | — | — | — | — | 0.87 |
0.7 |
— | — | — | 0.92 |
0.87 |
chr18 | 62906292 | 62912314 | chr18:62906292-62912314:+:L1HS:REF | L1HS | REF | full-length | PHLPP1 | 0.97 |
0.97 |
0.98 |
0.98 |
0.22 |
0.97 |
0.98 |
0.98 |
0.93 |
0.98 |
0.99 |
0.97 |
chr18 | 67603633 | 67605600 | chr18:67603633-67605600:+:L1HS:REF | L1HS | REF | 3prime-truncated | LOC643542 | 0.01 |
— | 0.86 |
0.97 |
0.95 |
0.94 |
0.75 |
0.97 |
0.98 |
0.19 |
0.97 |
0.85 |
chr18 | 70746549 | 70752581 | chr18:70746549-70752581:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.7 |
0.68 |
0.56 |
0.16 |
0.73 |
0.75 |
0.79 |
0.79 |
0.52 |
0.7 |
0.79 |
chr18 | 72966526 | 72972556 | chr18:72966526-72972556:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.87 |
0.69 |
0.39 |
0.15 |
0.79 |
0.63 |
0.84 |
0.74 |
0.51 |
0.71 |
0.55 |
chr18 | 75578680 | 75578682 | chr18:75578680-75578682:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | 0.79 |
— | 0.98 |
— | — | — |
chr18 | 75846851 | 75852883 | chr18:75846851-75852883:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.95 |
0.92 |
0.78 |
0.25 |
0.87 |
0.9 |
0.91 |
0.83 |
0.67 |
0.82 |
0.93 |
chr19 | 43864494 | 43867300 | chr19:43864494-43867300:-:L1HS:REF | L1HS | REF | 3prime-truncated | ZNF404 | 0.03 |
0.93 |
0.86 |
0.85 |
0.45 |
0.86 |
0.83 |
0.91 |
0.96 |
0.73 |
0.92 |
0.93 |
chr20 | 7116194 | 7122199 | chr20:7116194-7122199:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.9 |
0.94 |
0.9 |
0.16 |
0.86 |
0.87 |
0.87 |
0.97 |
0.78 |
0.93 |
0.87 |
chr20 | 11632779 | 11638837 | chr20:11632779-11638837:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.91 |
0.92 |
0.91 |
0.11 |
0.79 |
0.74 |
0.83 |
0.91 |
0.71 |
0.85 |
0.9 |
chr20 | 12801017 | 12807044 | chr20:12801017-12807044:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.73 |
0.8 |
0.74 |
0.45 |
0.75 |
0.67 |
0.7 |
0.87 |
0.63 |
0.69 |
0.69 |
chr20 | 17880292 | 17880294 | chr20:17880292-17880294:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.97 |
chr20 | 23426108 | 23432140 | chr20:23426108-23432140:+:L1HS:REF | L1HS | REF | full-length | NAPB | 0.78 |
0.82 |
0.93 |
— | 0.15 |
— | 0.8 |
— | 0.94 |
0.2 |
0.92 |
0.94 |
chr20 | 39977475 | 39977785 | chr20:39977475-39977785:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.0 |
0.98 |
0.94 |
— | 0.94 |
0.88 |
0.61 |
0.85 |
0.94 |
0.9 |
0.8 |
0.88 |
chr20 | 55859566 | 55865521 | chr20:55859566-55865521:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.54 |
0.83 |
0.68 |
0.87 |
— | — | — | 0.89 |
chr20 | 61397396 | 61397400 | chr20:61397396-61397400:+:L1HS:NONREF | L1HS | KNR | — | CDH4 | — | — | — | — | — | — | 0.91 |
— | — | — | 0.96 |
— |