Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr21 | 21885566 | 21885568 | chr21:21885566-21885568:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.83 |
— |
chr21 | 22253869 | 22253871 | chr21:22253869-22253871:-:L1HS:NONREF | L1HS | KNR | — | — | 0.01 |
— | 0.76 |
0.83 |
— | — | — | 0.86 |
0.93 |
0.7 |
0.84 |
0.91 |
chr22 | 15214621 | 15220667 | chr22:15214621-15220667:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.48 |
0.72 |
0.54 |
0.13 |
0.58 |
0.6 |
0.81 |
0.86 |
0.48 |
0.65 |
0.83 |
chr22 | 19223389 | 19223391 | chr22:19223389-19223391:+:L1HS:NONREF | L1HS | KNR | — | CLTCL1 | — | — | — | — | — | — | — | — | — | — | 0.96 |
— |
chr22 | 22131969 | 22131971 | chr22:22131969-22131971:-:L1HS:NONREF | L1HS | KNR | — | — | 0.37 |
0.97 |
— | — | 0.13 |
0.82 |
— | 0.92 |
— | — | 0.94 |
— |
chr22 | 22361253 | 22361257 | chr22:22361253-22361257:+:L1HS:NONREF | L1HS | KNR | — | — | 0.09 |
— | 0.95 |
— | 0.32 |
0.61 |
— | — | 0.68 |
0.92 |
0.62 |
0.95 |
chr22 | 28059912 | 28059914 | chr22:28059912-28059914:-:L1HS:NONREF | L1HS | KNR | — | TTC28 | 0.9 |
— | — | — | — | 0.85 |
— | 0.74 |
— | — | — | — |
chr22 | 28663283 | 28669315 | chr22:28663283-28669315:+:L1HS:REF | L1HS | REF | full-length | TTC28 | 0.01 |
0.02 |
0.87 |
0.04 |
0.05 |
0.95 |
0.06 |
0.96 |
0.73 |
0.01 |
0.93 |
0.98 |
chr22 | 34549683 | 34555708 | chr22:34549683-34555708:-:L1HS:REF | L1HS | REF | full-length | — | 0.22 |
0.91 |
0.79 |
0.53 |
0.13 |
0.79 |
0.55 |
0.81 |
0.93 |
0.41 |
0.77 |
0.77 |
chr22 | 48985761 | 48991792 | chr22:48985761-48991792:-:L1HS:REF | L1HS | REF | full-length | — | 0.65 |
0.98 |
0.75 |
0.83 |
0.21 |
0.79 |
0.7 |
0.83 |
0.92 |
0.66 |
0.82 |
0.89 |
chrX | 11707248 | 11713279 | chrX:11707248-11713279:+:L1HS:REF | L1HS | REF | full-length | — | — | 0.52 |
0.81 |
— | 0.04 |
0.89 |
0.85 |
0.84 |
0.94 |
0.72 |
0.96 |
— |
chrX | 11935296 | 11941314 | chrX:11935296-11941314:-:L1HS:REF | L1HS | REF | full-length | FRMPD4 | — | 0.36 |
0.74 |
0.68 |
— | — | — | 0.7 |
— | 0.66 |
— | 0.86 |
chrX | 23238516 | 23244575 | chrX:23238516-23244575:+:L1HS:REF | L1HS | REF | full-length | PTCHD1-AS | 0.01 |
0.81 |
0.74 |
0.65 |
0.94 |
0.81 |
0.67 |
0.81 |
0.93 |
0.68 |
0.82 |
0.85 |
chrX | 26314417 | 26320446 | chrX:26314417-26320446:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.76 |
0.72 |
0.73 |
0.13 |
0.82 |
0.73 |
0.71 |
0.94 |
0.69 |
0.82 |
0.97 |
chrX | 33407552 | 33407554 | chrX:33407552-33407554:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | 0.44 |
— | — | — | — | — | — | — |
chrX | 50019456 | 50025505 | chrX:50019456-50025505:-:L1HS:REF | L1HS | REF | full-length | CLCN5 | 0.51 |
0.92 |
0.81 |
0.96 |
0.03 |
0.94 |
0.96 |
0.69 |
0.87 |
0.24 |
0.97 |
0.98 |
chrX | 54118685 | 54124744 | chrX:54118685-54124744:-:L1HS:REF | L1HS | REF | full-length | FAM120C | 0.54 |
0.83 |
0.76 |
0.9 |
0.38 |
0.76 |
0.92 |
0.81 |
— | 0.75 |
0.9 |
0.92 |
chrX | 56695884 | 56701916 | chrX:56695884-56701916:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.94 |
0.75 |
0.72 |
0.08 |
0.82 |
0.91 |
0.69 |
0.89 |
0.69 |
0.82 |
0.98 |
chrX | 64013267 | 64019286 | chrX:64013267-64019286:-:L1HS:REF | L1HS | REF | full-length | — | 0.05 |
0.44 |
0.68 |
0.61 |
0.28 |
0.84 |
0.86 |
0.81 |
0.92 |
0.62 |
0.87 |
0.97 |
chrX | 66180696 | 66186728 | chrX:66180696-66186728:-:L1HS:REF | L1HS | REF | full-length | HEPH | — | 0.74 |
0.69 |
0.77 |
0.76 |
— | — | 0.91 |
0.96 |
0.48 |
0.86 |
0.98 |
chrX | 73106142 | 73112170 | chrX:73106142-73112170:+:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.83 |
0.66 |
0.65 |
0.11 |
0.73 |
0.87 |
0.76 |
0.88 |
0.58 |
0.85 |
0.87 |
chrX | 73380991 | 73387013 | chrX:73380991-73387013:+:L1HS:REF | L1HS | REF | full-length | — | 0.19 |
0.87 |
0.76 |
0.76 |
0.26 |
0.82 |
0.77 |
0.78 |
0.94 |
0.57 |
0.84 |
— |
chrX | 76233354 | 76239154 | chrX:76233354-76239154:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.71 |
0.51 |
0.27 |
0.87 |
0.82 |
0.41 |
0.59 |
0.94 |
— | 0.65 |
0.96 |
chrX | 76322775 | 76328806 | chrX:76322775-76328806:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.66 |
0.67 |
0.68 |
0.82 |
0.77 |
0.55 |
0.77 |
— | 0.42 |
0.76 |
0.89 |
chrX | 80905077 | 80905430 | chrX:80905077-80905430:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.03 |
0.82 |
0.64 |
0.51 |
0.91 |
0.8 |
0.36 |
0.73 |
0.86 |
0.27 |
0.82 |
0.99 |
chrX | 81841153 | 81847184 | chrX:81841153-81847184:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.49 |
0.68 |
— | 0.83 |
0.74 |
0.72 |
— | 0.92 |
0.44 |
0.82 |
0.98 |
chrX | 83059584 | 83065637 | chrX:83059584-83065637:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.9 |
0.7 |
0.66 |
0.74 |
0.78 |
0.71 |
0.83 |
0.91 |
0.58 |
0.84 |
0.97 |
chrX | 83542396 | 83548420 | chrX:83542396-83548420:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.7 |
0.72 |
0.68 |
0.12 |
0.78 |
0.88 |
0.72 |
0.9 |
0.59 |
0.82 |
0.98 |
chrX | 83838051 | 83839860 | chrX:83838051-83839860:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.64 |
0.58 |
0.63 |
0.84 |
0.75 |
0.73 |
0.78 |
0.95 |
0.47 |
0.7 |
0.96 |
chrX | 85733685 | 85734499 | chrX:85733685-85734499:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.73 |
0.16 |
0.04 |
0.87 |
0.38 |
0.54 |
0.71 |
0.93 |
0.16 |
0.64 |
0.93 |
chrX | 87821407 | 87827419 | chrX:87821407-87827419:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.9 |
0.75 |
0.64 |
0.39 |
0.81 |
0.85 |
0.75 |
0.91 |
0.61 |
0.86 |
0.98 |
chrX | 92254241 | 92256469 | chrX:92254241-92256469:-:L1HS:REF | L1HS | REF | 3prime-truncated | PCDH11X | 0.03 |
0.86 |
0.59 |
0.91 |
0.91 |
0.72 |
0.78 |
0.82 |
0.94 |
0.38 |
0.74 |
0.95 |
chrX | 96057824 | 96063842 | chrX:96057824-96063842:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.47 |
0.93 |
0.68 |
0.04 |
0.88 |
0.82 |
0.79 |
0.88 |
0.6 |
0.83 |
0.53 |
chrX | 106469285 | 106475319 | chrX:106469285-106475319:+:L1HS:REF | L1HS | REF | full-length | — | 0.09 |
0.96 |
0.86 |
0.76 |
0.1 |
0.88 |
0.96 |
0.8 |
0.92 |
0.85 |
0.89 |
0.98 |
chrX | 112314520 | 112314522 | chrX:112314520-112314522:-:L1HS:NONREF | L1HS | KNR | — | RTL4 | — | — | 0.57 |
0.51 |
— | 0.75 |
0.64 |
0.71 |
0.85 |
0.47 |
— | 0.92 |
chrX | 119435468 | 119441493 | chrX:119435468-119441493:-:L1HS:REF | L1HS | REF | full-length | SLC25A43 | 0.02 |
0.65 |
0.9 |
0.98 |
0.08 |
0.98 |
0.98 |
0.75 |
0.81 |
0.25 |
0.98 |
0.98 |
chrX | 127362223 | 127368248 | chrX:127362223-127368248:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.77 |
0.61 |
0.65 |
0.62 |
0.78 |
0.75 |
0.65 |
0.91 |
0.5 |
0.8 |
0.9 |
chrX | 130517377 | 130523407 | chrX:130517377-130523407:+:L1HS:REF | L1HS | REF | full-length | — | 0.45 |
0.92 |
0.85 |
0.84 |
0.13 |
0.89 |
0.95 |
0.61 |
0.9 |
0.82 |
0.88 |
0.96 |
chrX | 141421202 | 141427246 | chrX:141421202-141427246:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.6 |
0.77 |
— | — | — | — | — | — | 0.58 |
— | — |
chrX | 142477849 | 142483853 | chrX:142477849-142483853:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.95 |
0.81 |
0.87 |
0.26 |
0.88 |
0.81 |
0.75 |
0.97 |
0.62 |
0.89 |
0.91 |
chrX | 147653734 | 147659767 | chrX:147653734-147659767:+:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.67 |
0.78 |
0.72 |
0.1 |
0.63 |
0.63 |
0.75 |
0.77 |
0.66 |
0.83 |
0.9 |
chrX | 149178166 | 149184185 | chrX:149178166-149184185:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.8 |
0.83 |
0.5 |
0.13 |
0.74 |
0.74 |
0.62 |
0.51 |
0.67 |
0.71 |
— |
chrX | 151330320 | 151336351 | chrX:151330320-151336351:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.6 |
0.73 |
0.55 |
0.31 |
0.73 |
0.74 |
0.7 |
0.92 |
0.51 |
0.71 |
0.87 |
chrX | 155516016 | 155522048 | chrX:155516016-155522048:-:L1HS:REF | L1HS | REF | full-length | TMLHE | 0.97 |
0.98 |
0.89 |
0.98 |
0.2 |
0.98 |
0.99 |
0.84 |
0.96 |
0.9 |
0.98 |
0.98 |
chrY | 3443550 | 3449565 | chrY:3443550-3449565:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.61 |
0.79 |
0.84 |
— | 0.95 |
— | 0.86 |
— |
chrY | 4948913 | 4954938 | chrY:4948913-4954938:-:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.39 |
0.81 |
0.77 |
— | 0.94 |
— | 0.71 |
— |
chrY | 5606144 | 5612199 | chrY:5606144-5612199:-:L1HS:REF | L1HS | REF | full-length | PCDH11Y | — | — | — | — | 0.42 |
0.79 |
0.72 |
— | 0.97 |
— | 0.83 |
— |
chrY | 9941130 | 9947151 | chrY:9941130-9947151:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | 0.72 |
0.62 |
0.74 |
— | 0.9 |
— | 0.76 |
— |
chrY | 11856619 | 11861094 | chrY:11856619-11861094:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.38 |
— | — | — | 0.32 |
— |
chrY | 19034631 | 19038436 | chrY:19034631-19038436:+:L1HS:REF | L1HS | REF | 3prime-truncated | TTTY14 | — | — | — | — | 0.79 |
0.8 |
0.71 |
— | 0.15 |
— | 0.36 |
— |