Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 36112506 | 36118537 | chr2:36112506-36118537:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.83 |
0.81 |
0.68 |
0.07 |
0.77 |
0.81 |
0.84 |
0.95 |
0.62 |
0.84 |
0.89 |
chr2 | 36343098 | 36343100 | chr2:36343098-36343100:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.97 |
— | 0.21 |
0.94 |
0.97 |
— | 0.93 |
0.95 |
0.97 |
0.97 |
chr2 | 41686503 | 41686505 | chr2:41686503-41686505:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.95 |
— | — | — | — | — | — | 0.94 |
— | — | — |
chr2 | 41824275 | 41824277 | chr2:41824275-41824277:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.82 |
0.96 |
— | — | — | — | — |
chr2 | 68941762 | 68941764 | chr2:68941762-68941764:-:L1HS:NONREF | L1HS | KNR | — | GKN2 | — | — | — | 0.91 |
— | — | — | — | — | — | — | — |
chr2 | 71411474 | 71417501 | chr2:71411474-71417501:-:L1HS:REF | L1HS | REF | full-length | ZNF638 | 0.34 |
0.01 |
0.01 |
0.38 |
0.03 |
0.76 |
0.82 |
0.5 |
0.08 |
0.01 |
0.15 |
0.99 |
chr2 | 79702261 | 79702263 | chr2:79702261-79702263:+:L1HS:NONREF | L1HS | KNR | — | CTNNA2 | — | — | — | — | — | — | — | 0.94 |
— | — | — | — |
chr2 | 81870918 | 81870920 | chr2:81870918-81870920:+:L1HS:NONREF | L1HS | KNR | — | — | 0.01 |
0.83 |
0.76 |
0.86 |
— | 0.84 |
0.85 |
— | 0.95 |
0.58 |
— | 0.98 |
chr2 | 86655238 | 86661268 | chr2:86655238-86661268:-:L1HS:REF | L1HS | REF | full-length | RNF103-CHMP3 | 0.54 |
0.97 |
0.95 |
0.95 |
0.92 |
0.89 |
0.97 |
0.89 |
0.97 |
0.82 |
0.9 |
0.97 |
chr2 | 102295989 | 102295991 | chr2:102295989-102295991:+:L1HS:NONREF | L1HS | KNR | — | — | 0.36 |
— | — | — | — | — | — | — | — | — | — | — |
chr2 | 102566355 | 102572385 | chr2:102566355-102572385:-:L1HS:REF | L1HS | REF | full-length | — | 0.08 |
0.98 |
0.94 |
0.79 |
0.17 |
0.84 |
0.8 |
0.87 |
0.95 |
0.84 |
0.88 |
0.97 |
chr2 | 108458274 | 108458276 | chr2:108458274-108458276:-:L1HS:NONREF | L1HS | KNR | — | GCC2 | — | — | — | — | — | — | — | — | — | — | — | 0.98 |
chr2 | 112503812 | 112509845 | chr2:112503812-112509845:-:L1HS:REF | L1HS | REF | full-length | TTL | 0.61 |
0.88 |
0.98 |
0.95 |
0.4 |
0.97 |
0.98 |
0.97 |
0.96 |
0.95 |
0.98 |
0.98 |
chr2 | 126178048 | 126184064 | chr2:126178048-126184064:-:L1HS:REF | L1HS | REF | full-length | — | 0.15 |
0.69 |
0.81 |
0.71 |
0.46 |
0.72 |
0.61 |
0.81 |
0.86 |
0.64 |
0.79 |
0.84 |
chr2 | 128816413 | 128816415 | chr2:128816413-128816415:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | 0.66 |
0.86 |
0.9 |
— | — | — | 0.88 |
— |
chr2 | 129415687 | 129417400 | chr2:129415687-129417400:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.11 |
0.94 |
0.85 |
0.63 |
0.07 |
0.78 |
0.78 |
0.81 |
0.93 |
0.64 |
0.78 |
0.8 |
chr2 | 129685897 | 129687022 | chr2:129685897-129687022:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.03 |
0.43 |
— | 0.27 |
0.43 |
0.19 |
0.29 |
0.29 |
0.17 |
0.72 |
0.92 |
chr2 | 143253223 | 143253225 | chr2:143253223-143253225:+:L1HS:NONREF | L1HS | KNR | — | ARHGAP15 | — | 0.93 |
— | 0.81 |
— | 0.86 |
— | 0.92 |
— | 0.96 |
— | — |
chr2 | 143860956 | 143866987 | chr2:143860956-143866987:+:L1HS:REF | L1HS | REF | full-length | — | 0.67 |
0.94 |
0.98 |
0.87 |
0.21 |
0.96 |
0.84 |
0.98 |
0.96 |
0.96 |
0.98 |
0.98 |
chr2 | 148188745 | 148194773 | chr2:148188745-148194773:+:L1HS:REF | L1HS | REF | full-length | MBD5 | 0.72 |
0.9 |
0.84 |
0.9 |
0.15 |
0.91 |
0.86 |
0.91 |
0.87 |
0.85 |
0.88 |
0.88 |
chr2 | 153007766 | 153013796 | chr2:153007766-153013796:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.78 |
0.59 |
0.75 |
0.2 |
0.6 |
0.77 |
0.72 |
0.92 |
0.51 |
0.6 |
0.72 |
chr2 | 155671335 | 155671341 | chr2:155671335-155671341:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.91 |
— | 0.06 |
— | — | — | 0.93 |
0.85 |
— | 0.99 |
chr2 | 157566353 | 157572377 | chr2:157566353-157572377:+:L1HS:REF | L1HS | REF | full-length | ACVR1C | 0.02 |
0.94 |
0.91 |
0.75 |
0.14 |
0.79 |
0.81 |
0.8 |
0.9 |
0.81 |
0.87 |
0.98 |
chr2 | 160114516 | 160120680 | chr2:160114516-160120680:+:L1HS:REF | L1HS | REF | full-length | ITGB6 | 0.0 |
— | 0.86 |
— | 0.95 |
— | 0.37 |
— | — | 0.57 |
0.9 |
0.92 |
chr2 | 161892394 | 161892396 | chr2:161892394-161892396:-:L1HS:NONREF | L1HS | KNR | — | SLC4A10 | 0.03 |
— | — | — | — | — | — | — | — | — | — | — |
chr2 | 163432002 | 163432004 | chr2:163432002-163432004:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.75 |
— |
chr2 | 166988454 | 166994509 | chr2:166988454-166994509:+:L1HS:REF | L1HS | REF | full-length | XIRP2 | 0.02 |
0.85 |
0.81 |
— | 0.49 |
0.81 |
0.77 |
0.93 |
0.72 |
0.53 |
0.96 |
0.87 |
chr2 | 169248623 | 169254656 | chr2:169248623-169254656:+:L1HS:REF | L1HS | REF | full-length | LRP2 | 0.36 |
0.87 |
0.97 |
0.82 |
0.12 |
0.76 |
0.82 |
0.78 |
0.85 |
0.93 |
0.84 |
0.98 |
chr2 | 172315270 | 172321297 | chr2:172315270-172321297:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.96 |
0.96 |
0.86 |
0.22 |
0.96 |
0.92 |
0.98 |
0.95 |
0.89 |
0.92 |
0.97 |
chr2 | 175481951 | 175487994 | chr2:175481951-175487994:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.68 |
0.94 |
0.76 |
0.13 |
0.82 |
0.8 |
0.86 |
— | 0.88 |
0.85 |
0.97 |
chr2 | 177973073 | 177979090 | chr2:177973073-177979090:+:L1HS:REF | L1HS | REF | full-length | PDE11A | 0.11 |
0.94 |
0.96 |
0.8 |
0.08 |
0.85 |
0.97 |
0.85 |
0.7 |
0.94 |
0.92 |
0.98 |
chr2 | 180833661 | 180839689 | chr2:180833661-180839689:-:L1HS:REF | L1HS | REF | full-length | SCHLAP1 | 0.03 |
0.95 |
0.98 |
0.93 |
0.11 |
0.94 |
0.76 |
0.95 |
0.81 |
0.96 |
0.98 |
0.98 |
chr2 | 190613973 | 190613975 | chr2:190613973-190613975:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.91 |
— | — | — | — | 0.88 |
— | 0.89 |
— | — |
chr2 | 193170704 | 193171720 | chr2:193170704-193171720:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.05 |
0.98 |
0.9 |
0.98 |
0.05 |
0.84 |
0.92 |
0.83 |
0.06 |
0.66 |
0.88 |
0.98 |
chr2 | 193212420 | 193218448 | chr2:193212420-193218448:-:L1HS:REF | L1HS | REF | full-length | — | 0.08 |
0.94 |
0.89 |
0.93 |
0.13 |
0.84 |
0.86 |
0.84 |
0.95 |
0.93 |
0.86 |
0.98 |
chr2 | 196905587 | 196911636 | chr2:196905587-196911636:+:L1HS:REF | L1HS | REF | full-length | PGAP1 | 0.49 |
0.91 |
0.13 |
0.97 |
0.11 |
0.94 |
0.97 |
0.92 |
0.46 |
0.06 |
0.97 |
0.97 |
chr2 | 198915189 | 198915191 | chr2:198915189-198915191:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.49 |
— | — | — | 0.89 |
— | — | — | — | — | 0.98 |
chr2 | 213567231 | 213573262 | chr2:213567231-213573262:-:L1HS:REF | L1HS | REF | full-length | SPAG16 | 0.02 |
— | 0.78 |
— | 0.23 |
0.7 |
0.74 |
0.8 |
— | 0.47 |
0.88 |
— |
chr2 | 220413500 | 220413502 | chr2:220413500-220413502:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.77 |
— | — | — | — | — | 0.83 |
0.77 |
— | — |
chr2 | 229441293 | 229441295 | chr2:229441293-229441295:+:L1HS:NONREF | L1HS | KNR | — | DNER | — | — | — | — | — | — | 0.46 |
— | — | — | — | — |
chr2 | 229476842 | 229476844 | chr2:229476842-229476844:+:L1HS:NONREF | L1HS | KNR | — | DNER | — | 0.83 |
0.89 |
— | — | — | — | — | 0.86 |
0.71 |
— | 0.9 |
chr2 | 230337069 | 230342513 | chr2:230337069-230342513:-:L1HS:REF | L1HS | REF | 3prime-truncated | SP140L | 0.0 |
— | 0.96 |
0.99 |
0.08 |
0.98 |
0.97 |
0.98 |
0.95 |
0.5 |
0.98 |
0.01 |
chr2 | 232149196 | 232155229 | chr2:232149196-232155229:-:L1HS:REF | L1HS | REF | full-length | DIS3L2 | 0.93 |
0.97 |
0.96 |
0.94 |
0.18 |
0.96 |
0.98 |
0.94 |
0.81 |
0.97 |
0.98 |
0.99 |
chr3 | 3963076 | 3969110 | chr3:3963076-3969110:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.28 |
0.81 |
0.75 |
0.11 |
0.67 |
0.85 |
0.76 |
0.6 |
0.17 |
0.73 |
0.75 |
chr3 | 4916534 | 4922591 | chr3:4916534-4922591:+:L1HS:REF | L1HS | REF | full-length | BHLHE40-AS1 | 0.84 |
0.9 |
0.79 |
0.86 |
0.07 |
0.87 |
0.8 |
0.88 |
0.89 |
0.82 |
0.8 |
0.86 |
chr3 | 6711039 | 6711041 | chr3:6711039-6711041:-:L1HS:NONREF | L1HS | KNR | — | GRM7-AS3 | — | — | — | — | — | — | — | 0.66 |
— | — | — | — |
chr3 | 11488672 | 11492490 | chr3:11488672-11492490:-:L1HS:REF | L1HS | REF | 3prime-truncated | ATG7 | 0.84 |
0.95 |
0.98 |
0.96 |
0.93 |
0.97 |
0.93 |
0.96 |
0.95 |
0.94 |
0.97 |
0.97 |
chr3 | 17858274 | 17861391 | chr3:17858274-17861391:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.13 |
0.96 |
0.07 |
0.86 |
0.01 |
0.9 |
0.93 |
0.9 |
0.65 |
0.86 |
0.9 |
0.57 |
chr3 | 18516080 | 18520244 | chr3:18516080-18520244:+:L1HS:REF | L1HS | REF | 3prime-truncated | SATB1-AS1 | 0.02 |
0.42 |
0.85 |
0.21 |
0.11 |
0.51 |
0.49 |
0.5 |
0.71 |
0.08 |
0.53 |
0.66 |
chr3 | 20707402 | 20707404 | chr3:20707402-20707404:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.77 |
— | 0.91 |
— | — | — | — | — | — |