Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4 | 48051954 | 48057974 | chr4:48051954-48057974:-:L1HS:REF | L1HS | REF | full-length | TXK | — | 0.92 |
0.94 |
0.87 |
0.15 |
0.87 |
0.91 |
0.84 |
0.87 |
0.92 |
0.86 |
0.98 |
chr4 | 52538471 | 52544498 | chr4:52538471-52544498:+:L1HS:REF | L1HS | REF | full-length | — | 0.09 |
0.92 |
0.94 |
0.88 |
0.72 |
0.9 |
0.85 |
0.97 |
0.95 |
0.93 |
0.94 |
0.97 |
chr4 | 52816456 | 52822486 | chr4:52816456-52822486:+:L1HS:REF | L1HS | REF | full-length | LINC01618 | 0.14 |
0.93 |
0.98 |
0.8 |
0.56 |
0.93 |
0.94 |
0.95 |
0.94 |
0.95 |
0.96 |
0.96 |
chr4 | 53502121 | 53502123 | chr4:53502121-53502123:-:L1HS:NONREF | L1HS | KNR | — | LNX1 | 0.38 |
— | — | — | — | — | — | — | — | — | — | — |
chr4 | 57562316 | 57568347 | chr4:57562316-57568347:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.67 |
0.76 |
0.69 |
0.28 |
0.78 |
0.76 |
0.81 |
0.9 |
0.57 |
0.8 |
0.78 |
chr4 | 59078847 | 59084877 | chr4:59078847-59084877:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
— | — | 0.83 |
0.08 |
— | 0.72 |
0.86 |
0.95 |
— | — | 0.97 |
chr4 | 61939927 | 61945962 | chr4:61939927-61945962:-:L1HS:REF | L1HS | REF | full-length | ADGRL3 | 0.02 |
0.85 |
0.94 |
0.82 |
0.28 |
0.85 |
0.68 |
0.9 |
0.95 |
0.97 |
0.93 |
0.94 |
chr4 | 62726948 | 62732969 | chr4:62726948-62732969:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.91 |
0.9 |
0.82 |
0.34 |
0.88 |
0.83 |
0.87 |
0.98 |
0.94 |
0.86 |
0.94 |
chr4 | 68707017 | 68707021 | chr4:68707017-68707021:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.6 |
0.73 |
— | 0.91 |
0.8 |
— | — | 0.76 |
— |
chr4 | 69664009 | 69667565 | chr4:69664009-69667565:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.82 |
0.86 |
— | 0.09 |
0.76 |
0.71 |
0.77 |
0.91 |
0.36 |
0.65 |
0.96 |
chr4 | 70015396 | 70019676 | chr4:70015396-70019676:-:L1HS:REF | L1HS | REF | 3prime-truncated | HTN3 | 0.01 |
0.64 |
0.86 |
0.51 |
0.33 |
0.67 |
0.91 |
0.65 |
0.94 |
0.68 |
0.73 |
0.98 |
chr4 | 74717539 | 74723587 | chr4:74717539-74723587:-:L1HS:REF | L1HS | REF | full-length | — | 0.46 |
— | 0.95 |
0.86 |
0.64 |
— | 0.72 |
0.95 |
0.97 |
0.93 |
0.92 |
— |
chr4 | 78105735 | 78111765 | chr4:78105735-78111765:+:L1HS:REF | L1HS | REF | full-length | FRAS1 | 0.07 |
0.91 |
0.97 |
0.82 |
0.21 |
0.98 |
0.91 |
0.81 |
0.94 |
0.97 |
0.79 |
0.98 |
chr4 | 78347980 | 78354013 | chr4:78347980-78354013:+:L1HS:REF | L1HS | REF | full-length | FRAS1 | — | 0.93 |
— | — | 0.34 |
— | — | — | — | — | — | — |
chr4 | 79704552 | 79710581 | chr4:79704552-79710581:+:L1HS:REF | L1HS | REF | full-length | — | 0.74 |
0.88 |
0.93 |
0.65 |
0.13 |
0.83 |
0.84 |
0.91 |
0.91 |
0.92 |
0.92 |
0.91 |
chr4 | 79937715 | 79943746 | chr4:79937715-79943746:+:L1HS:REF | L1HS | REF | full-length | ANTXR2 | 0.97 |
0.85 |
0.98 |
0.85 |
0.11 |
0.99 |
0.98 |
0.97 |
0.91 |
0.86 |
0.98 |
0.98 |
chr4 | 79966907 | 79972933 | chr4:79966907-79972933:+:L1HS:REF | L1HS | REF | full-length | ANTXR2 | 0.98 |
0.89 |
— | 0.9 |
— | — | — | — | 0.96 |
— | — | 0.98 |
chr4 | 87347103 | 87353146 | chr4:87347103-87353146:-:L1HS:REF | L1HS | REF | full-length | HSD17B11 | 0.96 |
0.85 |
0.96 |
0.98 |
0.44 |
0.99 |
0.97 |
0.97 |
0.97 |
0.97 |
— | 0.98 |
chr4 | 91437491 | 91443691 | chr4:91437491-91443691:+:L1HS:REF | L1HS | REF | full-length | CCSER1 | 0.01 |
0.85 |
0.83 |
0.86 |
0.89 |
0.75 |
0.86 |
0.8 |
0.95 |
0.93 |
0.79 |
0.99 |
chr4 | 91978211 | 91984413 | chr4:91978211-91984413:+:L1HS:REF | L1HS | REF | full-length | — | 0.08 |
0.93 |
0.85 |
0.79 |
0.17 |
0.81 |
0.76 |
0.86 |
0.97 |
0.89 |
0.86 |
0.97 |
chr4 | 93608283 | 93614338 | chr4:93608283-93614338:-:L1HS:REF | L1HS | REF | full-length | GRID2 | 0.02 |
0.76 |
0.9 |
0.88 |
0.23 |
0.84 |
0.76 |
0.89 |
0.9 |
0.92 |
0.85 |
0.98 |
chr4 | 93638307 | 93644337 | chr4:93638307-93644337:-:L1HS:REF | L1HS | REF | full-length | GRID2 | 0.01 |
0.93 |
— | 0.88 |
0.07 |
0.81 |
0.75 |
0.86 |
0.88 |
— | 0.86 |
0.97 |
chr4 | 98592435 | 98598463 | chr4:98592435-98598463:-:L1HS:REF | L1HS | REF | full-length | TSPAN5 | 0.32 |
0.98 |
— | 0.82 |
0.47 |
0.99 |
0.84 |
0.99 |
0.95 |
0.74 |
0.98 |
0.99 |
chr4 | 106571057 | 106577070 | chr4:106571057-106577070:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.92 |
0.94 |
0.7 |
0.16 |
0.94 |
0.85 |
0.9 |
0.92 |
0.97 |
0.83 |
0.99 |
chr4 | 109327158 | 109327160 | chr4:109327158-109327160:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.86 |
chr4 | 110690112 | 110693684 | chr4:110690112-110693684:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.05 |
0.92 |
0.98 |
0.67 |
0.09 |
0.87 |
0.75 |
0.86 |
0.95 |
0.96 |
0.93 |
0.98 |
chr4 | 111707816 | 111707818 | chr4:111707816-111707818:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | 0.87 |
— | — | — | 0.91 |
— |
chr4 | 111894801 | 111900831 | chr4:111894801-111900831:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.79 |
0.88 |
0.8 |
0.06 |
0.81 |
0.79 |
0.75 |
0.94 |
0.88 |
0.78 |
0.95 |
chr4 | 119948726 | 119954758 | chr4:119948726-119954758:-:L1HS:REF | L1HS | REF | full-length | LINC02502 | 0.02 |
0.96 |
0.98 |
0.8 |
0.06 |
0.96 |
0.82 |
0.96 |
0.96 |
0.97 |
0.98 |
0.98 |
chr4 | 131260491 | 131260493 | chr4:131260491-131260493:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | 0.91 |
0.17 |
— | — | — | — | — | — | — |
chr4 | 135178140 | 135183747 | chr4:135178140-135183747:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.05 |
0.8 |
0.85 |
0.89 |
0.94 |
0.83 |
0.81 |
0.93 |
0.96 |
0.96 |
0.86 |
0.98 |
chr4 | 136293494 | 136299546 | chr4:136293494-136299546:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.95 |
0.93 |
0.94 |
0.15 |
0.83 |
0.9 |
0.84 |
0.96 |
0.95 |
0.88 |
0.94 |
chr4 | 137496278 | 137500000 | chr4:137496278-137500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.13 |
0.95 |
0.38 |
0.95 |
0.35 |
0.94 |
0.77 |
0.98 |
0.77 |
0.07 |
0.97 |
0.99 |
chr4 | 144809658 | 144810951 | chr4:144809658-144810951:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.85 |
0.86 |
0.68 |
0.05 |
0.78 |
0.8 |
0.82 |
0.53 |
0.8 |
0.8 |
0.89 |
chr4 | 146304143 | 146304145 | chr4:146304143-146304145:+:L1HS:NONREF | L1HS | KNR | — | SLC10A7 | 0.81 |
0.89 |
— | 0.91 |
0.08 |
0.7 |
0.45 |
0.91 |
— | — | 0.92 |
0.92 |
chr4 | 151811653 | 151811655 | chr4:151811653-151811655:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.73 |
— | — | — | — | — | — | — | — | — | — |
chr4 | 157986118 | 157986120 | chr4:157986118-157986120:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.94 |
0.92 |
— | — | — | — | 0.98 |
chr4 | 166449405 | 166449678 | chr4:166449405-166449678:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.03 |
0.76 |
0.86 |
0.92 |
0.86 |
0.83 |
0.86 |
0.83 |
0.9 |
0.75 |
0.83 |
0.9 |
chr4 | 166569976 | 166576007 | chr4:166569976-166576007:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.33 |
0.88 |
0.86 |
0.08 |
0.84 |
0.74 |
0.88 |
0.94 |
0.77 |
0.82 |
0.98 |
chr4 | 166755895 | 166761908 | chr4:166755895-166761908:+:L1HS:REF | L1HS | REF | full-length | SPOCK3 | 0.01 |
0.8 |
— | 0.89 |
0.49 |
0.54 |
— | — | — | — | 0.72 |
— |
chr4 | 166850455 | 166851634 | chr4:166850455-166851634:+:L1HS:REF | L1HS | REF | 3prime-truncated | SPOCK3 | 0.01 |
0.5 |
0.81 |
0.85 |
0.9 |
0.72 |
0.51 |
0.73 |
0.95 |
0.56 |
0.72 |
0.98 |
chr4 | 168491946 | 168491948 | chr4:168491946-168491948:-:L1HS:NONREF | L1HS | KNR | — | PALLD | — | — | — | — | — | — | — | 0.9 |
— | — | — | — |
chr4 | 169515501 | 169521532 | chr4:169515501-169521532:-:L1HS:REF | L1HS | REF | full-length | NEK1 | 0.95 |
0.97 |
0.98 |
0.97 |
0.37 |
0.98 |
0.98 |
0.98 |
0.97 |
0.97 |
0.98 |
0.98 |
chr4 | 189137085 | 189143104 | chr4:189137085-189143104:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | 0.76 |
— | 0.87 |
0.85 |
0.96 |
0.97 |
— | — | — |
chr5 | 4500001 | 4502372 | chr5:4500001-4502372:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.42 |
0.86 |
0.61 |
0.24 |
0.77 |
0.66 |
0.75 |
0.94 |
0.43 |
0.72 |
0.85 |
chr5 | 13416497 | 13422525 | chr5:13416497-13422525:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.88 |
— | 0.88 |
0.18 |
0.81 |
— | — | 0.9 |
— | 0.83 |
— |
chr5 | 15906515 | 15912550 | chr5:15906515-15912550:-:L1HS:REF | L1HS | REF | full-length | FBXL7 | 0.04 |
0.89 |
0.88 |
0.59 |
0.14 |
0.97 |
0.85 |
0.97 |
0.79 |
0.73 |
0.98 |
0.85 |
chr5 | 21207622 | 21207624 | chr5:21207622-21207624:+:L1HS:NONREF | L1HS | KNR | — | — | 0.02 |
0.96 |
— | — | — | — | — | — | 0.99 |
— | 0.89 |
— |
chr5 | 33797437 | 33797439 | chr5:33797437-33797439:-:L1HS:NONREF | L1HS | KNR | — | ADAMTS12 | — | — | — | — | — | 0.98 |
— | — | — | — | — | — |
chr5 | 34147845 | 34154031 | chr5:34147845-34154031:+:L1HS:REF | L1HS | REF | full-length | C1QTNF3 | 0.95 |
0.97 |
0.97 |
0.98 |
0.11 |
0.97 |
0.98 |
0.96 |
0.91 |
0.93 |
0.98 |
0.98 |