Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5 | 40162817 | 40162819 | chr5:40162817-40162819:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | 0.02 |
— | — | — | — | — |
chr5 | 52086499 | 52088220 | chr5:52086499-52088220:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.1 |
0.84 |
0.64 |
0.54 |
0.72 |
0.73 |
0.58 |
0.71 |
0.94 |
0.78 |
0.7 |
0.91 |
chr5 | 58384174 | 58390206 | chr5:58384174-58390206:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
— | — | — | 0.91 |
0.91 |
— | — | — | — | 0.95 |
0.97 |
chr5 | 66750283 | 66754219 | chr5:66750283-66754219:+:L1HS:REF | L1HS | REF | 3prime-truncated | MAST4 | 0.01 |
0.97 |
0.97 |
0.58 |
0.89 |
0.79 |
0.6 |
0.78 |
0.97 |
0.93 |
0.78 |
0.82 |
chr5 | 79778884 | 79784938 | chr5:79778884-79784938:-:L1HS:REF | L1HS | REF | full-length | CMYA5 | 0.28 |
0.64 |
0.97 |
0.58 |
0.06 |
0.71 |
0.48 |
0.65 |
0.44 |
0.68 |
0.84 |
0.98 |
chr5 | 81616090 | 81622140 | chr5:81616090-81622140:+:L1HS:REF | L1HS | REF | full-length | SSBP2 | 0.98 |
0.98 |
0.98 |
0.98 |
0.1 |
0.85 |
0.89 |
0.88 |
0.56 |
0.97 |
0.98 |
0.99 |
chr5 | 86510690 | 86516743 | chr5:86510690-86516743:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.91 |
0.87 |
0.81 |
0.06 |
0.8 |
0.88 |
0.83 |
0.94 |
0.89 |
0.82 |
0.98 |
chr5 | 90154963 | 90154967 | chr5:90154963-90154967:+:L1HS:NONREF | L1HS | KNR | — | LINC01339 | 0.02 |
0.92 |
— | 0.57 |
0.17 |
0.78 |
0.8 |
0.82 |
0.88 |
0.96 |
0.73 |
0.98 |
chr5 | 102131356 | 102137385 | chr5:102131356-102137385:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.92 |
0.95 |
0.68 |
0.15 |
0.83 |
0.88 |
0.78 |
0.92 |
0.94 |
0.77 |
0.97 |
chr5 | 102189483 | 102194435 | chr5:102189483-102194435:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.05 |
0.96 |
0.84 |
0.61 |
0.17 |
0.77 |
0.91 |
0.76 |
0.92 |
0.82 |
0.82 |
0.97 |
chr5 | 104518587 | 104524616 | chr5:104518587-104524616:+:L1HS:REF | L1HS | REF | full-length | — | — | 0.95 |
0.79 |
— | 0.84 |
0.85 |
0.88 |
— | 0.95 |
0.89 |
0.96 |
— |
chr5 | 105513236 | 105519274 | chr5:105513236-105519274:-:L1HS:REF | L1HS | REF | full-length | — | 0.47 |
0.98 |
0.87 |
0.81 |
0.17 |
0.84 |
0.86 |
0.9 |
0.95 |
0.93 |
0.95 |
0.98 |
chr5 | 106599671 | 106599673 | chr5:106599671-106599673:+:L1HS:NONREF | L1HS | KNR | — | — | 0.05 |
— | — | — | — | — | — | — | — | — | — | — |
chr5 | 109259387 | 109265418 | chr5:109259387-109265418:+:L1HS:REF | L1HS | REF | full-length | LOC285638 | 0.48 |
0.97 |
0.97 |
0.93 |
0.11 |
0.91 |
— | 0.9 |
0.97 |
0.96 |
0.95 |
0.99 |
chr5 | 110144555 | 110144557 | chr5:110144555-110144557:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | 0.03 |
0.86 |
0.95 |
— | — | 0.66 |
— | — |
chr5 | 111302238 | 111308262 | chr5:111302238-111308262:+:L1HS:REF | L1HS | REF | full-length | CAMK4 | 0.02 |
0.64 |
0.98 |
0.57 |
0.12 |
0.85 |
0.65 |
0.93 |
0.97 |
0.92 |
0.97 |
0.92 |
chr5 | 113367383 | 113367385 | chr5:113367383-113367385:+:L1HS:NONREF | L1HS | KNR | — | MCC | — | — | — | 0.62 |
— | — | — | — | — | — | — | — |
chr5 | 116113364 | 116113366 | chr5:116113364-116113366:-:L1HS:NONREF | L1HS | KNR | — | COMMD10 | 0.9 |
0.99 |
0.98 |
0.98 |
— | — | — | 0.96 |
0.65 |
0.96 |
— | — |
chr5 | 117673840 | 117673842 | chr5:117673840-117673842:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | 0.97 |
— | — | — | — | — | 0.95 |
— |
chr5 | 118651327 | 118651329 | chr5:118651327-118651329:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.88 |
— |
chr5 | 119684785 | 119690814 | chr5:119684785-119690814:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.91 |
0.73 |
0.65 |
0.85 |
0.78 |
0.67 |
0.72 |
0.95 |
0.55 |
0.82 |
0.98 |
chr5 | 133583288 | 133589299 | chr5:133583288-133589299:+:L1HS:REF | L1HS | REF | full-length | FSTL4 | 0.03 |
— | 0.87 |
0.71 |
0.32 |
0.34 |
0.84 |
0.82 |
0.24 |
0.93 |
0.8 |
0.92 |
chr5 | 137679083 | 137679086 | chr5:137679083-137679086:-:L1HS:NONREF | L1HS | KNR | — | KLHL3 | 0.05 |
— | 0.97 |
— | — | — | 0.92 |
— | — | — | — | 0.95 |
chr5 | 146609485 | 146615534 | chr5:146609485-146615534:+:L1HS:REF | L1HS | REF | full-length | PPP2R2B | 0.08 |
0.92 |
0.94 |
0.85 |
0.13 |
0.79 |
0.82 |
0.81 |
0.86 |
0.66 |
0.81 |
0.93 |
chr5 | 152076868 | 152082891 | chr5:152076868-152082891:+:L1HS:REF | L1HS | REF | full-length | LINC01933 | — | — | — | — | — | — | 0.05 |
— | — | — | 0.35 |
— |
chr5 | 152886441 | 152892473 | chr5:152886441-152892473:-:L1HS:REF | L1HS | REF | full-length | LINC01470 | 0.03 |
0.66 |
0.78 |
0.63 |
0.34 |
0.79 |
0.71 |
0.8 |
0.95 |
0.58 |
0.8 |
0.85 |
chr5 | 153070982 | 153077008 | chr5:153070982-153077008:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.78 |
0.86 |
0.72 |
0.4 |
0.82 |
0.8 |
0.8 |
0.95 |
0.46 |
0.72 |
0.8 |
chr5 | 156061919 | 156067966 | chr5:156061919-156067966:-:L1HS:REF | L1HS | REF | full-length | — | 0.3 |
0.9 |
0.89 |
0.86 |
0.15 |
0.91 |
0.71 |
0.94 |
0.96 |
0.51 |
0.92 |
0.9 |
chr5 | 160709608 | 160715639 | chr5:160709608-160715639:-:L1HS:REF | L1HS | REF | full-length | ATP10B | 0.03 |
0.88 |
0.9 |
0.66 |
0.82 |
0.82 |
0.84 |
0.82 |
0.95 |
0.78 |
0.84 |
0.86 |
chr5 | 162530742 | 162531677 | chr5:162530742-162531677:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.41 |
0.41 |
0.84 |
0.6 |
0.47 |
0.39 |
0.53 |
0.78 |
0.21 |
0.47 |
0.52 |
chr5 | 165068136 | 165068138 | chr5:165068136-165068138:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | 0.82 |
0.75 |
— | — | 0.89 |
— | 0.83 |
— |
chr5 | 166141191 | 166145692 | chr5:166141191-166145692:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.75 |
0.7 |
0.41 |
0.42 |
0.72 |
0.5 |
0.72 |
0.92 |
0.32 |
0.71 |
0.76 |
chr5 | 166966760 | 166972815 | chr5:166966760-166972815:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.89 |
0.92 |
0.78 |
0.19 |
0.8 |
0.83 |
0.84 |
0.93 |
0.67 |
0.82 |
0.84 |
chr5 | 173402796 | 173408828 | chr5:173402796-173408828:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.9 |
0.92 |
0.85 |
0.11 |
0.92 |
0.9 |
0.88 |
0.91 |
0.88 |
0.94 |
0.98 |
chr5 | 177772245 | 177778274 | chr5:177772245-177778274:+:L1HS:REF | L1HS | REF | full-length | FAM153A | 0.15 |
0.95 |
— | — | 0.07 |
0.81 |
— | 0.88 |
0.9 |
— | 0.89 |
0.95 |
chr6 | 2417774 | 2423803 | chr6:2417774-2423803:-:L1HS:REF | L1HS | REF | full-length | GMDS-DT | 0.06 |
0.94 |
0.89 |
0.96 |
0.08 |
0.97 |
0.92 |
0.96 |
0.96 |
0.95 |
0.95 |
0.91 |
chr6 | 13190800 | 13190802 | chr6:13190800-13190802:+:L1HS:NONREF | L1HS | KNR | — | PHACTR1 | — | — | — | — | 0.41 |
— | — | — | 0.98 |
— | — | — |
chr6 | 13502816 | 13502818 | chr6:13502816-13502818:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.92 |
0.96 |
— | 0.96 |
— | — | — |
chr6 | 19764892 | 19770918 | chr6:19764892-19770918:+:L1HS:REF | L1HS | REF | full-length | LOC100506885 | 0.01 |
— | 0.97 |
— | 0.33 |
0.95 |
0.9 |
0.9 |
— | — | 0.93 |
0.97 |
chr6 | 24811657 | 24817706 | chr6:24811657-24817706:-:L1HS:REF | L1HS | REF | full-length | RIPOR2 | — | — | — | 0.97 |
0.35 |
— | 0.81 |
— | — | — | 0.97 |
— |
chr6 | 32489511 | 32489513 | chr6:32489511-32489513:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.3 |
— |
chr6 | 32621789 | 32621791 | chr6:32621789-32621791:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.8 |
— | — | — | — | — | — |
chr6 | 51874783 | 51880802 | chr6:51874783-51880802:+:L1HS:REF | L1HS | REF | full-length | PKHD1 | 0.01 |
0.28 |
0.93 |
0.62 |
0.13 |
0.63 |
0.66 |
— | 0.31 |
— | — | 0.92 |
chr6 | 62658301 | 62658303 | chr6:62658301-62658303:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | 0.97 |
— | — | 0.97 |
chr6 | 69495362 | 69500000 | chr6:69495362-69500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
0.45 |
0.66 |
0.3 |
0.58 |
0.6 |
0.36 |
0.62 |
0.93 |
0.69 |
0.69 |
0.97 |
chr6 | 70010347 | 70016552 | chr6:70010347-70016552:+:L1HS:REF | L1HS | REF | full-length | COL19A1 | 0.02 |
0.63 |
0.94 |
0.63 |
0.09 |
0.87 |
0.8 |
0.83 |
0.95 |
0.92 |
0.8 |
0.98 |
chr6 | 72988654 | 72994686 | chr6:72988654-72994686:-:L1HS:REF | L1HS | REF | full-length | KCNQ5 | 0.44 |
0.91 |
0.97 |
0.84 |
0.1 |
0.98 |
0.88 |
0.96 |
0.96 |
0.97 |
0.97 |
0.92 |
chr6 | 76875759 | 76877075 | chr6:76875759-76877075:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.12 |
0.01 |
0.89 |
0.89 |
0.09 |
0.59 |
0.62 |
0.68 |
0.08 |
0.0 |
0.68 |
0.99 |
chr6 | 83333952 | 83339981 | chr6:83333952-83339981:+:L1HS:REF | L1HS | REF | full-length | ME1 | 0.89 |
0.8 |
0.98 |
0.97 |
0.18 |
0.96 |
0.84 |
0.96 |
0.94 |
0.49 |
0.98 |
0.99 |
chr6 | 84608436 | 84614463 | chr6:84608436-84614463:+:L1HS:REF | L1HS | REF | full-length | — | 0.08 |
— | — | — | — | — | — | — | — | — | — | — |