Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8 | 27113618 | 27119645 | chr8:27113618-27119645:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.58 |
0.78 |
0.72 |
0.8 |
0.76 |
0.82 |
0.78 |
0.85 |
0.49 |
0.73 |
0.77 |
chr8 | 40575655 | 40575657 | chr8:40575655-40575657:-:L1HS:NONREF | L1HS | KNR | — | ZMAT4 | — | — | — | — | — | — | — | 0.99 |
— | — | — | — |
chr8 | 56249347 | 56249349 | chr8:56249347-56249349:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.94 |
— | — | — | — | — | — | 0.02 |
— | — |
chr8 | 71486984 | 71486986 | chr8:71486984-71486986:-:L1HS:NONREF | L1HS | KNR | — | EYA1 | 0.01 |
0.95 |
— | — | — | — | — | 0.89 |
0.93 |
— | — | 0.86 |
chr8 | 72875538 | 72881588 | chr8:72875538-72881588:-:L1HS:REF | L1HS | REF | full-length | KCNB2 | 0.01 |
0.49 |
0.96 |
— | — | — | — | — | — | 0.95 |
0.79 |
0.97 |
chr8 | 75621331 | 75627355 | chr8:75621331-75627355:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.83 |
0.84 |
0.62 |
0.86 |
0.83 |
0.6 |
0.88 |
0.97 |
0.83 |
0.86 |
0.98 |
chr8 | 84516386 | 84516388 | chr8:84516386-84516388:+:L1HS:NONREF | L1HS | KNR | — | RALYL | — | 0.64 |
— | — | 0.06 |
— | — | — | — | — | — | — |
chr8 | 88685705 | 88691760 | chr8:88685705-88691760:+:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.89 |
0.94 |
0.95 |
0.5 |
0.86 |
0.82 |
0.84 |
0.98 |
0.72 |
0.84 |
0.96 |
chr8 | 91522091 | 91528121 | chr8:91522091-91528121:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.96 |
0.91 |
0.73 |
0.45 |
0.94 |
0.79 |
— | 0.87 |
0.88 |
0.93 |
0.92 |
chr8 | 104739851 | 104745873 | chr8:104739851-104745873:-:L1HS:REF | L1HS | REF | full-length | — | 0.79 |
0.93 |
0.94 |
0.71 |
0.35 |
0.97 |
0.81 |
0.92 |
0.98 |
0.91 |
0.98 |
0.89 |
chr8 | 104959062 | 104964830 | chr8:104959062-104964830:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.02 |
— | — | — | — | — | — | 0.96 |
— | — | — | — |
chr8 | 121329878 | 121334807 | chr8:121329878-121334807:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.04 |
0.97 |
0.99 |
0.97 |
0.32 |
0.97 |
0.98 |
0.99 |
0.95 |
0.41 |
0.98 |
0.98 |
chr8 | 125582886 | 125588889 | chr8:125582886-125588889:+:L1HS:REF | L1HS | REF | full-length | — | — | — | — | — | — | — | 0.97 |
— | — | — | — | — |
chr8 | 127311575 | 127315431 | chr8:127311575-127315431:+:L1HS:REF | L1HS | REF | 3prime-truncated | CASC21 | 0.03 |
0.07 |
0.87 |
0.84 |
0.52 |
0.97 |
0.93 |
0.93 |
0.88 |
0.59 |
0.98 |
0.99 |
chr8 | 134070756 | 134076773 | chr8:134070756-134076773:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.97 |
0.97 |
0.69 |
0.21 |
0.82 |
0.94 |
— | — | 0.53 |
0.96 |
— |
chr8 | 135875862 | 135881890 | chr8:135875862-135881890:+:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.48 |
0.85 |
0.65 |
0.36 |
0.79 |
0.73 |
0.82 |
0.89 |
0.6 |
0.82 |
0.86 |
chr8 | 136438074 | 136444105 | chr8:136438074-136444105:-:L1HS:REF | L1HS | REF | full-length | — | 0.03 |
0.38 |
0.74 |
0.73 |
0.11 |
0.8 |
0.63 |
0.74 |
0.89 |
0.53 |
0.75 |
0.87 |
chr9 | 1447164 | 1447166 | chr9:1447164-1447166:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.08 |
— | — | — | — | — | — |
chr9 | 5491417 | 5491419 | chr9:5491417-5491419:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.99 |
0.94 |
— | 0.98 |
— | — | 0.97 |
0.94 |
— | 0.98 |
chr9 | 7741405 | 7741407 | chr9:7741405-7741407:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.28 |
— | — | — | — | — | — | — | — | — | — |
chr9 | 18560890 | 18560892 | chr9:18560890-18560892:-:L1HS:NONREF | L1HS | KNR | — | ADAMTSL1 | — | — | — | — | — | 0.97 |
— | — | — | — | — | — |
chr9 | 18584294 | 18584296 | chr9:18584294-18584296:+:L1HS:NONREF | L1HS | KNR | — | ADAMTSL1 | — | — | 0.93 |
— | — | — | — | — | — | 0.95 |
— | — |
chr9 | 20655632 | 20658802 | chr9:20655632-20658802:-:L1HS:REF | L1HS | REF | 3prime-truncated | FOCAD | 0.0 |
0.27 |
0.01 |
0.1 |
0.07 |
0.63 |
0.94 |
0.42 |
0.04 |
0.01 |
0.86 |
0.0 |
chr9 | 28111895 | 28117865 | chr9:28111895-28117865:-:L1HS:REF | L1HS | REF | full-length | LINGO2 | 0.03 |
— | 0.22 |
0.77 |
0.15 |
— | — | 0.73 |
0.2 |
— | 0.81 |
0.98 |
chr9 | 63913382 | 63916426 | chr9:63913382-63916426:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.23 |
0.69 |
0.9 |
— | 0.88 |
0.63 |
0.52 |
0.62 |
0.79 |
0.37 |
0.68 |
0.79 |
chr9 | 75474002 | 75474004 | chr9:75474002-75474004:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | 0.82 |
— | — | — | — | — | — |
chr9 | 83049539 | 83055571 | chr9:83049539-83055571:-:L1HS:REF | L1HS | REF | full-length | RASEF | 0.04 |
0.97 |
0.99 |
0.91 |
0.25 |
0.93 |
0.89 |
0.94 |
0.92 |
0.99 |
0.9 |
0.91 |
chr9 | 87276756 | 87276758 | chr9:87276756-87276758:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.92 |
— | — | — | — | — | — | 0.88 |
— | 0.84 |
chr9 | 90149604 | 90155634 | chr9:90149604-90155634:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.95 |
0.92 |
0.58 |
0.17 |
0.71 |
0.74 |
0.79 |
0.93 |
0.86 |
0.8 |
0.84 |
chr9 | 91654471 | 91654473 | chr9:91654471-91654473:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.78 |
— |
chr9 | 94113535 | 94119565 | chr9:94113535-94119565:-:L1HS:REF | L1HS | REF | full-length | PTPDC1 | 0.94 |
0.97 |
0.97 |
0.91 |
0.21 |
0.98 |
0.98 |
0.96 |
0.95 |
0.96 |
0.97 |
0.99 |
chr9 | 95697585 | 95703604 | chr9:95697585-95703604:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.93 |
0.94 |
0.72 |
0.47 |
0.84 |
0.88 |
0.9 |
0.89 |
0.89 |
0.92 |
0.88 |
chr9 | 99498741 | 99500000 | chr9:99498741-99500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.14 |
0.97 |
0.93 |
0.67 |
0.09 |
0.88 |
0.88 |
0.83 |
0.6 |
0.93 |
0.69 |
0.97 |
chr9 | 103237485 | 103241471 | chr9:103237485-103241471:+:L1HS:REF | L1HS | REF | 3prime-truncated | LINC01492 | 0.02 |
0.8 |
0.82 |
0.81 |
0.09 |
0.78 |
0.36 |
0.84 |
0.88 |
0.45 |
0.75 |
0.88 |
chr9 | 108802688 | 108802690 | chr9:108802688-108802690:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.97 |
— | — | — | 0.9 |
— | 0.91 |
— | — | — | — |
chr9 | 110417102 | 110423126 | chr9:110417102-110423126:+:L1HS:REF | L1HS | REF | full-length | SVEP1 | 0.2 |
0.91 |
0.97 |
0.85 |
0.09 |
0.98 |
0.93 |
0.88 |
0.94 |
0.95 |
0.97 |
0.98 |
chr9 | 110791097 | 110797129 | chr9:110791097-110797129:+:L1HS:REF | L1HS | REF | full-length | MUSK | 0.03 |
0.95 |
0.98 |
0.82 |
0.36 |
0.98 |
0.81 |
0.98 |
0.96 |
0.96 |
0.99 |
0.98 |
chr9 | 112798107 | 112804159 | chr9:112798107-112804159:-:L1HS:REF | L1HS | REF | full-length | SNX30 | 0.89 |
0.55 |
0.98 |
0.97 |
0.14 |
0.96 |
0.97 |
0.98 |
0.91 |
0.52 |
0.97 |
0.98 |
chr10 | 5245354 | 5251383 | chr10:5245354-5251383:+:L1HS:REF | L1HS | REF | full-length | — | 0.62 |
0.98 |
0.89 |
0.87 |
0.43 |
0.8 |
0.98 |
0.83 |
0.94 |
0.72 |
0.88 |
0.96 |
chr10 | 6369617 | 6375667 | chr10:6369617-6375667:-:L1HS:REF | L1HS | REF | full-length | — | 0.1 |
0.96 |
— | 0.81 |
— | — | — | — | 0.93 |
— | — | — |
chr10 | 19088601 | 19094618 | chr10:19088601-19094618:-:L1HS:REF | L1HS | REF | full-length | MALRD1 | 0.01 |
0.97 |
0.88 |
0.75 |
0.4 |
0.81 |
0.77 |
0.93 |
0.94 |
0.92 |
0.87 |
0.83 |
chr10 | 25418756 | 25418758 | chr10:25418756-25418758:-:L1HS:NONREF | L1HS | KNR | — | GPR158 | 0.01 |
0.94 |
0.8 |
0.79 |
0.12 |
0.66 |
0.26 |
0.73 |
0.68 |
0.53 |
0.7 |
0.9 |
chr10 | 33510845 | 33516876 | chr10:33510845-33516876:-:L1HS:REF | L1HS | REF | full-length | — | 0.07 |
0.98 |
0.97 |
0.81 |
0.35 |
0.95 |
0.91 |
0.96 |
0.87 |
0.96 |
0.95 |
0.96 |
chr10 | 37995443 | 38000000 | chr10:37995443-38000000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.56 |
0.95 |
0.92 |
0.7 |
0.8 |
0.85 |
0.84 |
0.85 |
0.93 |
0.93 |
0.9 |
0.96 |
chr10 | 38190899 | 38190901 | chr10:38190899-38190901:+:L1HS:NONREF | L1HS | UNKNR | — | LOC100129055 | — | — | — | — | — | — | — | — | — | 0.03 |
— | — |
chr10 | 59019528 | 59019530 | chr10:59019528-59019530:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.93 |
— |
chr10 | 67189566 | 67189568 | chr10:67189566-67189568:+:L1HS:NONREF | L1HS | KNR | — | CTNNA3 | 0.01 |
— | — | — | 0.01 |
0.68 |
— | — | 0.83 |
— | — | — |
chr10 | 81441665 | 81441975 | chr10:81441665-81441975:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | — | 0.96 |
0.8 |
0.66 |
0.87 |
0.8 |
0.71 |
0.83 |
0.96 |
0.5 |
0.73 |
0.87 |
chr10 | 85355506 | 85361538 | chr10:85355506-85361538:+:L1HS:REF | L1HS | REF | full-length | — | 0.05 |
0.44 |
0.94 |
0.79 |
0.07 |
0.8 |
0.82 |
0.83 |
0.9 |
0.68 |
0.8 |
0.87 |
chr10 | 89957874 | 89957877 | chr10:89957874-89957877:-:L1HS:NONREF | L1HS | KNR | — | LINC01375 | — | — | — | — | — | — | 0.75 |
— | — | — | 0.78 |
— |