Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12 | 108996947 | 109000000 | chr12:108996947-109000000:+:L1HS:REF | L1HS | REF | 3prime-truncated | SVOP | 0.02 |
0.96 |
0.91 |
0.84 |
0.1 |
0.84 |
0.92 |
0.86 |
0.77 |
0.81 |
0.86 |
0.95 |
chr12 | 117376640 | 117376642 | chr12:117376640-117376642:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.97 |
— | — | — | — | — | — | — | 0.82 |
— |
chr12 | 126299023 | 126305038 | chr12:126299023-126305038:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.53 |
0.8 |
0.72 |
0.12 |
0.89 |
0.82 |
0.84 |
0.98 |
0.66 |
0.85 |
0.93 |
chr12 | 126318381 | 126318383 | chr12:126318381-126318383:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | 0.77 |
— | — | — | 0.75 |
— | — | 0.57 |
— | 0.89 |
chr13 | 19496786 | 19500000 | chr13:19496786-19500000:+:L1HS:REF | L1HS | REF | 3prime-truncated | TPTE2 | 0.12 |
0.64 |
0.82 |
0.74 |
0.11 |
0.7 |
0.73 |
0.86 |
0.76 |
0.61 |
0.78 |
0.84 |
chr13 | 29641706 | 29647706 | chr13:29641706-29647706:-:L1HS:REF | L1HS | REF | full-length | LOC102723345 | — | 0.01 |
— | 0.75 |
0.06 |
— | 0.03 |
0.56 |
0.1 |
— | — | 0.97 |
chr13 | 31302314 | 31308370 | chr13:31302314-31308370:+:L1HS:REF | L1HS | REF | full-length | B3GLCT | 0.7 |
0.9 |
0.91 |
0.89 |
0.66 |
0.9 |
0.92 |
0.89 |
0.91 |
0.89 |
0.91 |
0.91 |
chr13 | 34480262 | 34486294 | chr13:34480262-34486294:-:L1HS:REF | L1HS | REF | full-length | LINC02343 | 0.01 |
0.97 |
0.96 |
0.91 |
0.4 |
0.92 |
0.87 |
0.89 |
0.96 |
0.96 |
0.94 |
0.97 |
chr13 | 35213627 | 35213629 | chr13:35213627-35213629:-:L1HS:NONREF | L1HS | KNR | — | NBEA | — | — | — | — | — | — | — | — | — | — | 0.93 |
— |
chr13 | 48465555 | 48471566 | chr13:48465555-48471566:+:L1HS:REF | L1HS | REF | full-length | RB1 | 0.97 |
0.98 |
0.98 |
0.99 |
0.48 |
0.99 |
0.98 |
0.97 |
0.96 |
0.98 |
0.99 |
0.98 |
chr13 | 54572234 | 54573121 | chr13:54572234-54573121:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.06 |
0.7 |
0.88 |
0.68 |
0.4 |
0.68 |
0.79 |
0.83 |
0.26 |
0.18 |
0.83 |
0.76 |
chr13 | 60888196 | 60888202 | chr13:60888196-60888202:-:L1HS:NONREF | L1HS | KNR | — | — | 0.04 |
0.73 |
0.9 |
— | 0.07 |
— | 0.89 |
— | 0.92 |
0.92 |
0.84 |
0.98 |
chr13 | 74039068 | 74039070 | chr13:74039068-74039070:-:L1HS:NONREF | L1HS | KNR | — | KLF12 | — | — | — | — | — | — | 0.95 |
— | — | — | — | — |
chr13 | 74426326 | 74432354 | chr13:74426326-74432354:+:L1HS:REF | L1HS | REF | full-length | LINC00381 | 0.01 |
0.93 |
0.89 |
0.8 |
0.42 |
0.8 |
0.8 |
0.9 |
0.9 |
0.88 |
0.93 |
0.86 |
chr13 | 76612823 | 76618851 | chr13:76612823-76618851:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.59 |
0.89 |
0.72 |
0.22 |
0.87 |
0.76 |
0.93 |
0.95 |
0.93 |
0.91 |
0.82 |
chr13 | 92685561 | 92691592 | chr13:92685561-92691592:-:L1HS:REF | L1HS | REF | full-length | GPC5 | 0.02 |
0.84 |
0.88 |
0.87 |
0.28 |
0.82 |
0.78 |
0.87 |
0.92 |
0.92 |
0.81 |
0.89 |
chr13 | 97667408 | 97673440 | chr13:97667408-97673440:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.96 |
0.9 |
0.74 |
0.27 |
0.83 |
0.83 |
0.86 |
0.91 |
0.9 |
0.89 |
0.95 |
chr13 | 105382665 | 105383251 | chr13:105382665-105383251:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.85 |
0.95 |
0.91 |
0.5 |
0.84 |
0.72 |
0.91 |
0.94 |
0.85 |
0.97 |
0.93 |
chr13 | 108510472 | 108516495 | chr13:108510472-108516495:-:L1HS:REF | L1HS | REF | full-length | — | 0.76 |
0.95 |
0.91 |
0.79 |
0.11 |
0.82 |
0.83 |
0.88 |
0.85 |
0.62 |
0.87 |
0.9 |
chr14 | 18283818 | 18289864 | chr14:18283818-18289864:-:L1HS:REF | L1HS | REF | full-length | — | — | 0.46 |
— | 0.54 |
0.06 |
0.72 |
— | — | — | — | 0.7 |
— |
chr14 | 24523704 | 24523706 | chr14:24523704-24523706:-:L1HS:NONREF | L1HS | KNR | — | — | — | 0.79 |
— | — | — | — | — | — | — | — | — | — |
chr14 | 24948620 | 24948622 | chr14:24948620-24948622:-:L1HS:NONREF | L1HS | KNR | — | STXBP6 | — | — | — | 0.58 |
— | — | — | — | — | — | — | — |
chr14 | 30681601 | 30681603 | chr14:30681601-30681603:-:L1HS:NONREF | L1HS | KNR | — | SCFD1 | — | — | 0.98 |
— | — | 0.95 |
— | 0.96 |
— | 0.01 |
— | — |
chr14 | 30684809 | 30690837 | chr14:30684809-30690837:-:L1HS:REF | L1HS | REF | full-length | SCFD1 | 0.97 |
0.48 |
0.01 |
0.96 |
0.03 |
0.76 |
0.01 |
0.45 |
0.24 |
0.01 |
0.46 |
0.95 |
chr14 | 44705080 | 44711104 | chr14:44705080-44711104:-:L1HS:REF | L1HS | REF | full-length | — | 0.04 |
0.98 |
0.89 |
0.87 |
0.13 |
0.85 |
0.92 |
0.89 |
0.97 |
0.83 |
0.89 |
0.99 |
chr14 | 45477110 | 45483169 | chr14:45477110-45483169:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.7 |
0.88 |
0.73 |
0.28 |
0.79 |
0.55 |
0.81 |
0.89 |
0.45 |
0.81 |
0.75 |
chr14 | 46727484 | 46727758 | chr14:46727484-46727758:-:L1HS:REF | L1HS | REF | 3prime-truncated | — | 0.01 |
0.78 |
0.78 |
0.74 |
0.91 |
0.83 |
0.65 |
0.83 |
0.97 |
0.75 |
0.85 |
0.97 |
chr14 | 48187082 | 48193113 | chr14:48187082-48193113:+:L1HS:REF | L1HS | REF | full-length | — | 0.07 |
0.88 |
0.83 |
0.71 |
0.07 |
0.68 |
0.82 |
0.8 |
0.95 |
0.77 |
0.74 |
0.9 |
chr14 | 51794601 | 51800632 | chr14:51794601-51800632:-:L1HS:REF | L1HS | REF | full-length | — | 0.01 |
0.83 |
0.89 |
0.8 |
0.1 |
0.83 |
0.85 |
0.9 |
0.9 |
0.88 |
0.96 |
0.85 |
chr14 | 52201038 | 52201040 | chr14:52201038-52201040:-:L1HS:NONREF | L1HS | KNR | — | — | 0.04 |
0.88 |
— | 0.66 |
0.08 |
0.81 |
0.83 |
— | 0.86 |
0.86 |
— | — |
chr14 | 58753700 | 58753702 | chr14:58753700-58753702:+:L1HS:NONREF | L1HS | KNR | — | — | — | 0.98 |
— | — | 0.09 |
0.97 |
— | — | — | — | — | 0.97 |
chr14 | 61055116 | 61061148 | chr14:61055116-61061148:-:L1HS:REF | L1HS | REF | full-length | SLC38A6 | 0.96 |
0.98 |
0.97 |
0.97 |
0.17 |
0.97 |
0.98 |
0.97 |
0.96 |
0.97 |
0.98 |
0.99 |
chr14 | 62535851 | 62541882 | chr14:62535851-62541882:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.82 |
0.79 |
0.88 |
0.13 |
0.81 |
0.8 |
0.87 |
0.94 |
0.79 |
0.9 |
0.87 |
chr14 | 63116706 | 63122735 | chr14:63116706-63122735:-:L1HS:REF | L1HS | REF | full-length | — | 0.05 |
0.87 |
0.86 |
0.93 |
0.09 |
0.83 |
0.83 |
0.89 |
0.93 |
0.87 |
0.83 |
0.87 |
chr14 | 66953145 | 66953147 | chr14:66953145-66953147:-:L1HS:NONREF | L1HS | KNR | — | GPHN | — | — | — | — | — | — | — | 0.83 |
— | — | 0.83 |
— |
chr14 | 70547290 | 70553322 | chr14:70547290-70553322:+:L1HS:REF | L1HS | REF | full-length | — | 0.28 |
0.97 |
0.97 |
0.9 |
0.7 |
0.96 |
0.97 |
0.93 |
0.97 |
0.89 |
0.97 |
0.98 |
chr14 | 70731081 | 70731084 | chr14:70731081-70731084:+:L1HS:NONREF | L1HS | KNR | — | MAP3K9 | — | — | 0.98 |
— | — | — | — | — | — | 0.89 |
0.94 |
— |
chr14 | 76216188 | 76216190 | chr14:76216188-76216190:-:L1HS:NONREF | L1HS | KNR | — | GPATCH2L | — | — | — | — | 0.06 |
— | — | — | — | — | — | — |
chr14 | 79314060 | 79314943 | chr14:79314060-79314943:+:L1HS:REF | L1HS | REF | 3prime-truncated | NRXN3 | 0.01 |
0.87 |
0.97 |
0.59 |
0.21 |
0.82 |
0.66 |
0.96 |
0.93 |
0.94 |
0.94 |
0.82 |
chr15 | 33739636 | 33739638 | chr15:33739636-33739638:-:L1HS:NONREF | L1HS | KNR | — | RYR3 | — | 0.85 |
— | — | — | — | — | — | 0.81 |
— | — | — |
chr15 | 47215130 | 47215132 | chr15:47215130-47215132:-:L1HS:NONREF | L1HS | KNR | — | SEMA6D | 0.04 |
— | — | 0.8 |
— | 0.85 |
0.79 |
0.93 |
— | — | 0.97 |
0.85 |
chr15 | 51417216 | 51423246 | chr15:51417216-51423246:-:L1HS:REF | L1HS | REF | full-length | GLDN | 0.11 |
0.97 |
0.97 |
0.92 |
0.16 |
0.92 |
0.89 |
0.95 |
0.92 |
0.97 |
0.97 |
0.98 |
chr15 | 51551621 | 51551623 | chr15:51551621-51551623:+:L1HS:NONREF | L1HS | KNR | — | DMXL2 | — | — | — | — | — | — | — | 0.96 |
— | — | — | — |
chr15 | 54926081 | 54932099 | chr15:54926081-54932099:-:L1HS:REF | L1HS | REF | full-length | — | 0.47 |
— | 0.96 |
0.75 |
0.23 |
0.9 |
0.88 |
0.82 |
0.96 |
0.91 |
0.95 |
0.89 |
chr15 | 55958953 | 55958956 | chr15:55958953-55958956:+:L1HS:NONREF | L1HS | KNR | — | NEDD4 | — | 0.05 |
0.97 |
— | 0.09 |
0.97 |
— | — | — | 0.01 |
0.98 |
— |
chr15 | 80327181 | 80327183 | chr15:80327181-80327183:-:L1HS:NONREF | L1HS | KNR | — | LINC00927 | — | — | — | — | — | — | — | — | — | — | 0.92 |
— |
chr15 | 81995166 | 82000000 | chr15:81995166-82000000:+:L1HS:REF | L1HS | REF | 3prime-truncated | — | — | — | — | — | 0.02 |
0.12 |
— | — | 0.06 |
0.16 |
0.08 |
— |
chr15 | 82882881 | 82888919 | chr15:82882881-82888919:-:L1HS:REF | L1HS | REF | full-length | HOMER2 | — | 0.97 |
0.99 |
0.76 |
0.24 |
0.89 |
0.94 |
0.92 |
0.9 |
0.97 |
0.91 |
0.96 |
chr15 | 83450804 | 83456834 | chr15:83450804-83456834:-:L1HS:REF | L1HS | REF | full-length | SH3GL3 | 0.29 |
0.83 |
0.98 |
0.79 |
0.17 |
0.86 |
0.85 |
0.88 |
0.93 |
0.91 |
0.83 |
0.96 |
chr15 | 87509891 | 87515920 | chr15:87509891-87515920:+:L1HS:REF | L1HS | REF | full-length | — | 0.6 |
0.98 |
0.9 |
0.62 |
0.2 |
0.84 |
0.67 |
0.86 |
0.91 |
0.53 |
0.83 |
0.83 |