Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5 | 105513236 | 105519274 | chr5:105513236-105519274:-:L1HS:REF | L1HS | REF | full-length | — | 0.47 |
0.98 |
0.87 |
0.81 |
0.17 |
0.84 |
0.86 |
0.9 |
0.95 |
0.93 |
0.95 |
0.98 |
chr5 | 106425382 | 106431381 | chr5:106425382-106431381:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.91 |
0.85 |
0.73 |
0.86 |
0.86 |
0.66 |
0.97 |
0.99 |
0.89 |
0.95 |
0.98 |
chr5 | 106599671 | 106599673 | chr5:106599671-106599673:+:L1HS:NONREF | L1HS | KNR | — | — | 0.05 |
— | — | — | — | — | — | — | — | — | — | — |
chr5 | 106622805 | 106628811 | chr5:106622805-106628811:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.81 |
0.54 |
0.82 |
0.77 |
0.6 |
0.88 |
— | 0.89 |
0.94 |
0.97 |
chr5 | 106713866 | 106719888 | chr5:106713866-106719888:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.97 |
0.92 |
0.67 |
0.84 |
0.83 |
0.82 |
0.95 |
0.93 |
0.88 |
0.91 |
0.99 |
chr5 | 106898992 | 106905178 | chr5:106898992-106905178:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01950 | 0.0 |
0.94 |
0.94 |
0.77 |
0.44 |
0.76 |
0.78 |
0.93 |
0.93 |
0.94 |
0.91 |
0.98 |
chr5 | 108398474 | 108401117 | chr5:108398474-108401117:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.23 |
— |
chr5 | 109259387 | 109265418 | chr5:109259387-109265418:+:L1HS:REF | L1HS | REF | full-length | LOC285638 | 0.48 |
0.97 |
0.97 |
0.93 |
0.11 |
0.91 |
— | 0.9 |
0.97 |
0.96 |
0.95 |
0.99 |
chr5 | 109441620 | 109447643 | chr5:109441620-109447643:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.66 |
0.97 |
0.91 |
0.96 |
0.82 |
0.82 |
0.82 |
0.85 |
0.98 |
0.9 |
0.88 |
0.93 |
chr5 | 110144555 | 110144557 | chr5:110144555-110144557:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | 0.03 |
0.86 |
0.95 |
— | — | 0.66 |
— | — |
chr5 | 110278636 | 110284796 | chr5:110278636-110284796:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.53 |
0.66 |
0.37 |
0.88 |
0.77 |
0.59 |
0.77 |
0.93 |
0.64 |
0.79 |
0.96 |
chr5 | 110933986 | 110940119 | chr5:110933986-110940119:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.03 |
0.3 |
0.63 |
0.27 |
0.86 |
0.74 |
0.17 |
0.88 |
0.9 |
0.29 |
0.95 |
0.82 |
chr5 | 110985740 | 110991743 | chr5:110985740-110991743:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.03 |
0.83 |
0.86 |
0.67 |
0.53 |
0.77 |
0.48 |
0.94 |
0.93 |
0.29 |
0.97 |
0.94 |
chr5 | 111029735 | 111035854 | chr5:111029735-111035854:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.37 |
0.83 |
0.25 |
0.9 |
0.7 |
0.57 |
0.92 |
0.93 |
0.66 |
0.95 |
0.86 |
chr5 | 111084879 | 111090908 | chr5:111084879-111090908:-:L1PA3:REF | L1PA3 | REF | full-length | WDR36 | 0.67 |
0.94 |
0.9 |
0.89 |
0.84 |
0.91 |
0.91 |
— | — | 0.91 |
0.94 |
0.87 |
chr5 | 111302238 | 111308262 | chr5:111302238-111308262:+:L1HS:REF | L1HS | REF | full-length | CAMK4 | 0.02 |
0.64 |
0.98 |
0.57 |
0.12 |
0.85 |
0.65 |
0.93 |
0.97 |
0.92 |
0.97 |
0.92 |
chr5 | 111986003 | 111992116 | chr5:111986003-111992116:-:L1PA3:REF | L1PA3 | REF | full-length | NREP-AS1 | 0.03 |
0.45 |
0.95 |
0.73 |
0.92 |
0.96 |
0.89 |
0.99 |
0.97 |
0.87 |
0.97 |
0.94 |
chr5 | 112460747 | 112466882 | chr5:112460747-112466882:-:L1PA5:REF | L1PA5 | REF | full-length | — | 0.01 |
0.94 |
0.84 |
0.05 |
0.83 |
0.47 |
0.18 |
0.56 |
0.91 |
0.86 |
0.45 |
— |
chr5 | 112538668 | 112545103 | chr5:112538668-112545103:+:L1PA7:REF | L1PA7 | REF | full-length | — | 0.8 |
— | 0.68 |
0.06 |
0.08 |
0.38 |
0.04 |
0.11 |
— | 0.52 |
0.24 |
0.89 |
chr5 | 112586038 | 112590543 | chr5:112586038-112590543:+:L1P2:REF | L1P2 | REF | 3prime-truncated | — | — | — | 0.98 |
— | 0.93 |
— | — | — | — | — | 0.77 |
0.89 |
chr5 | 112677335 | 112679631 | chr5:112677335-112679631:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | LOC102467216 | — | — | — | — | — | — | — | — | — | — | 0.94 |
— |
chr5 | 113367383 | 113367385 | chr5:113367383-113367385:+:L1HS:NONREF | L1HS | KNR | — | MCC | — | — | — | 0.62 |
— | — | — | — | — | — | — | — |
chr5 | 113923302 | 113925132 | chr5:113923302-113925132:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | 0.0 |
0.91 |
0.43 |
0.16 |
0.87 |
0.52 |
0.24 |
0.49 |
0.94 |
0.3 |
0.54 |
0.56 |
chr5 | 114157007 | 114163149 | chr5:114157007-114163149:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.36 |
0.67 |
0.49 |
0.87 |
0.94 |
0.6 |
0.93 |
0.94 |
0.43 |
0.9 |
0.87 |
chr5 | 114295046 | 114295849 | chr5:114295046-114295849:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.8 |
0.6 |
0.12 |
0.92 |
0.92 |
0.06 |
0.95 |
0.92 |
0.26 |
0.98 |
0.58 |
chr5 | 114670871 | 114676900 | chr5:114670871-114676900:+:L1PA3:REF | L1PA3 | REF | full-length | LOC101927078 | — | — | — | — | 0.96 |
— | 0.69 |
0.7 |
— | — | 0.69 |
0.87 |
chr5 | 114813131 | 114819396 | chr5:114813131-114819396:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.0 |
0.28 |
0.35 |
0.09 |
— | 0.38 |
0.03 |
0.42 |
— | 0.0 |
0.3 |
0.35 |
chr5 | 115117313 | 115123392 | chr5:115117313-115123392:+:L1PA5:REF | L1PA5 | REF | full-length | TRIM36 | 0.02 |
0.8 |
0.74 |
0.73 |
0.69 |
0.58 |
0.68 |
0.65 |
0.77 |
0.75 |
0.71 |
0.8 |
chr5 | 115441912 | 115448215 | chr5:115441912-115448215:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
— | 0.91 |
0.55 |
— | 0.93 |
0.02 |
— | — | 0.53 |
0.93 |
— |
chr5 | 115674518 | 115680703 | chr5:115674518-115680703:+:L1PA3:REF | L1PA3 | REF | full-length | LOC102467217 | 0.01 |
0.41 |
0.88 |
0.4 |
0.93 |
0.72 |
0.78 |
0.81 |
0.91 |
0.83 |
0.83 |
0.97 |
chr5 | 115877197 | 115883667 | chr5:115877197-115883667:-:L1PA7:REF | L1PA7 | REF | full-length | AP3S1 | — | — | — | — | — | — | — | — | — | — | 0.28 |
— |
chr5 | 116079901 | 116082733 | chr5:116079901-116082733:+:L1P3:REF | L1P3 | REF | 3prime-truncated | COMMD10 | 0.61 |
0.85 |
0.96 |
0.87 |
0.88 |
0.74 |
0.72 |
0.83 |
0.96 |
0.91 |
0.74 |
0.79 |
chr5 | 116113364 | 116113366 | chr5:116113364-116113366:-:L1HS:NONREF | L1HS | KNR | — | COMMD10 | 0.9 |
0.99 |
0.98 |
0.98 |
— | — | — | 0.96 |
0.65 |
0.96 |
— | — |
chr5 | 117338253 | 117344286 | chr5:117338253-117344286:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.23 |
0.78 |
0.42 |
0.25 |
0.72 |
0.03 |
0.68 |
0.74 |
0.88 |
0.79 |
0.96 |
chr5 | 117527598 | 117533625 | chr5:117527598-117533625:-:L1PA2:REF | L1PA2 | REF | full-length | LINC00992 | 0.02 |
0.94 |
0.85 |
0.66 |
0.28 |
0.87 |
0.78 |
0.82 |
0.94 |
0.95 |
0.94 |
0.98 |
chr5 | 117673840 | 117673842 | chr5:117673840-117673842:+:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | 0.97 |
— | — | — | — | — | 0.95 |
— |
chr5 | 118382971 | 118389064 | chr5:118382971-118389064:+:L1PA3:REF | L1PA3 | REF | full-length | LINC02208 | 0.01 |
0.98 |
0.55 |
0.19 |
0.88 |
0.65 |
0.21 |
0.66 |
0.97 |
0.17 |
0.74 |
0.96 |
chr5 | 118500000 | 118502912 | chr5:118500000-118502912:-:L1P1:REF | L1P1 | REF | 3prime-truncated | LINC02208 | 0.01 |
0.97 |
0.39 |
0.26 |
0.89 |
0.77 |
0.12 |
0.76 |
0.97 |
0.13 |
0.77 |
0.96 |
chr5 | 118651327 | 118651329 | chr5:118651327-118651329:-:L1HS:NONREF | L1HS | KNR | — | — | — | — | — | — | — | — | — | — | — | — | 0.88 |
— |
chr5 | 119294044 | 119300263 | chr5:119294044-119300263:-:L1PA3:REF | L1PA3 | REF | full-length | TNFAIP8 | — | — | 0.94 |
0.98 |
0.9 |
0.96 |
0.18 |
— | — | 0.04 |
0.98 |
1.0 |
chr5 | 119684785 | 119690814 | chr5:119684785-119690814:-:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.91 |
0.73 |
0.65 |
0.85 |
0.78 |
0.67 |
0.72 |
0.95 |
0.55 |
0.82 |
0.98 |
chr5 | 119776586 | 119780799 | chr5:119776586-119780799:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | — | — | 0.84 |
0.71 |
0.56 |
— | 0.68 |
— | — | 0.23 |
0.89 |
0.98 |
chr5 | 119906031 | 119906624 | chr5:119906031-119906624:-:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.0 |
0.8 |
0.62 |
0.07 |
0.87 |
0.73 |
0.21 |
0.71 |
0.91 |
0.11 |
0.69 |
0.98 |
chr5 | 119987772 | 119992292 | chr5:119987772-119992292:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.08 |
— | 0.35 |
— | — | 0.45 |
0.0 |
0.65 |
— | 0.11 |
0.74 |
0.89 |
chr5 | 120126861 | 120133028 | chr5:120126861-120133028:-:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | 0.63 |
0.43 |
0.82 |
0.97 |
0.22 |
0.77 |
0.88 |
0.27 |
0.97 |
0.96 |
chr5 | 120176046 | 120182173 | chr5:120176046-120182173:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.08 |
0.72 |
0.78 |
0.74 |
0.91 |
0.91 |
0.68 |
0.9 |
0.95 |
0.54 |
0.92 |
0.96 |
chr5 | 120421208 | 120427233 | chr5:120421208-120427233:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.09 |
0.88 |
0.84 |
0.59 |
0.26 |
0.9 |
0.63 |
0.98 |
0.96 |
0.53 |
0.97 |
0.97 |
chr5 | 120831425 | 120836963 | chr5:120831425-120836963:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.09 |
0.63 |
0.85 |
0.53 |
0.52 |
0.85 |
0.46 |
0.86 |
0.88 |
0.46 |
0.91 |
0.98 |
chr5 | 121064235 | 121070241 | chr5:121064235-121070241:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.08 |
0.77 |
0.75 |
0.6 |
0.09 |
0.82 |
0.23 |
0.88 |
0.97 |
0.19 |
0.9 |
0.98 |
chr5 | 121659901 | 121666048 | chr5:121659901-121666048:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | 0.77 |
— | 0.15 |
0.85 |
— | — | 0.37 |
0.98 |