Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2 | 55442106 | 55447873 | chr2:55442106-55447873:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.86 |
0.52 |
0.95 |
0.96 |
0.83 |
0.89 |
0.83 |
0.87 |
0.96 |
0.94 |
0.84 |
0.96 |
chr2 | 55462161 | 55468310 | chr2:55462161-55468310:+:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.74 |
— |
chr2 | 55736329 | 55742393 | chr2:55736329-55742393:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.32 |
0.86 |
0.97 |
0.96 |
0.11 |
0.95 |
0.89 |
0.95 |
0.93 |
0.77 |
0.91 |
0.91 |
chr2 | 55788120 | 55794261 | chr2:55788120-55794261:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.05 |
0.02 |
0.95 |
0.96 |
0.9 |
0.91 |
— | 0.93 |
0.88 |
0.91 |
0.9 |
0.95 |
chr2 | 55814032 | 55820140 | chr2:55814032-55820140:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.97 |
— |
chr2 | 55831543 | 55837683 | chr2:55831543-55837683:-:L1PA6:REF | L1PA6 | REF | full-length | — | 0.18 |
0.98 |
0.95 |
1.0 |
0.94 |
0.99 |
1.0 |
0.98 |
1.0 |
0.9 |
0.91 |
1.0 |
chr2 | 56551597 | 56557745 | chr2:56551597-56557745:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.92 |
0.75 |
0.1 |
0.9 |
0.74 |
0.2 |
0.68 |
0.88 |
0.54 |
0.63 |
0.37 |
chr2 | 56603447 | 56606959 | chr2:56603447-56606959:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.06 |
— | — | — | 0.17 |
— |
chr2 | 57418710 | 57424719 | chr2:57418710-57424719:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.0 |
0.12 |
0.72 |
0.56 |
0.29 |
0.6 |
0.52 |
0.7 |
— | 0.34 |
0.65 |
0.96 |
chr2 | 57608847 | 57614848 | chr2:57608847-57614848:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.85 |
0.75 |
0.6 |
0.8 |
0.8 |
0.79 |
— | 0.96 |
0.54 |
0.72 |
0.98 |
chr2 | 58168158 | 58171615 | chr2:58168158-58171615:+:L1P2:REF | L1P2 | REF | 3prime-truncated | FANCL | 0.94 |
0.97 |
0.98 |
0.98 |
0.9 |
0.97 |
0.97 |
0.97 |
0.97 |
0.95 |
0.9 |
0.96 |
chr2 | 58171614 | 58177788 | chr2:58171614-58177788:+:L1PA3:REF | L1PA3 | REF | full-length | FANCL | 0.72 |
0.93 |
0.96 |
0.97 |
0.8 |
0.95 |
0.93 |
0.99 |
0.91 |
0.97 |
0.98 |
0.94 |
chr2 | 58325341 | 58329409 | chr2:58325341-58329409:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.02 |
0.55 |
0.9 |
0.77 |
0.88 |
0.76 |
0.44 |
0.78 |
0.96 |
0.87 |
0.79 |
0.98 |
chr2 | 58381542 | 58387566 | chr2:58381542-58387566:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.06 |
0.77 |
0.89 |
0.92 |
0.15 |
0.86 |
0.88 |
0.86 |
0.94 |
0.91 |
0.9 |
0.98 |
chr2 | 60034873 | 60039411 | chr2:60034873-60039411:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.01 |
0.68 |
0.67 |
0.28 |
0.85 |
0.58 |
0.48 |
0.58 |
0.91 |
0.64 |
0.54 |
0.66 |
chr2 | 60083662 | 60089694 | chr2:60083662-60089694:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.87 |
0.92 |
0.71 |
0.17 |
0.82 |
0.84 |
0.84 |
0.9 |
0.84 |
0.82 |
0.9 |
chr2 | 60141191 | 60147223 | chr2:60141191-60147223:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.03 |
0.98 |
0.96 |
0.84 |
0.41 |
0.87 |
0.91 |
0.89 |
0.93 |
0.92 |
0.86 |
0.91 |
chr2 | 60189023 | 60195053 | chr2:60189023-60195053:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.11 |
0.88 |
0.1 |
0.89 |
0.76 |
0.72 |
0.75 |
0.96 |
0.68 |
0.76 |
0.9 |
chr2 | 60203200 | 60207771 | chr2:60203200-60207771:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.07 |
0.65 |
0.85 |
0.0 |
0.82 |
0.32 |
0.0 |
0.54 |
0.73 |
0.53 |
0.28 |
0.0 |
chr2 | 62580885 | 62586986 | chr2:62580885-62586986:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.93 |
0.83 |
0.65 |
0.94 |
0.96 |
0.98 |
0.83 |
0.94 |
0.81 |
0.76 |
0.97 |
chr2 | 62616418 | 62622729 | chr2:62616418-62622729:-:L1PA7:REF | L1PA7 | REF | full-length | — | 0.01 |
0.97 |
0.9 |
0.77 |
0.91 |
0.93 |
0.95 |
0.91 |
0.96 |
0.82 |
0.75 |
0.99 |
chr2 | 62645710 | 62651726 | chr2:62645710-62651726:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.84 |
0.68 |
0.32 |
0.73 |
0.7 |
0.97 |
0.65 |
0.85 |
0.65 |
0.85 |
0.88 |
chr2 | 62835478 | 62841498 | chr2:62835478-62841498:+:L1PA2:REF | L1PA2 | REF | full-length | EHBP1 | 0.98 |
0.98 |
0.98 |
0.99 |
0.3 |
0.99 |
0.99 |
0.98 |
0.98 |
0.98 |
0.99 |
0.98 |
chr2 | 63210476 | 63216721 | chr2:63210476-63216721:+:L1PA5:REF | L1PA5 | REF | full-length | WDPCP | 0.04 |
0.88 |
0.59 |
0.83 |
0.84 |
0.52 |
0.46 |
0.37 |
0.84 |
0.39 |
0.36 |
0.92 |
chr2 | 63530723 | 63536624 | chr2:63530723-63536624:+:L1PA6:REF | L1PA6 | REF | 3prime-truncated | WDPCP | 0.14 |
0.61 |
0.67 |
0.25 |
0.72 |
0.65 |
0.62 |
0.63 |
0.64 |
0.64 |
0.8 |
0.78 |
chr2 | 63619721 | 63621877 | chr2:63619721-63621877:+:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | 0.0 |
— | — | 0.44 |
0.3 |
— | 0.54 |
— | — | 0.86 |
0.14 |
1.0 |
chr2 | 63706915 | 63708761 | chr2:63706915-63708761:-:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | — | — | — | — | — | — | 0.87 |
— | — | — | 0.87 |
0.91 |
chr2 | 63926516 | 63932665 | chr2:63926516-63932665:+:L1PA7:REF | L1PA7 | REF | full-length | VPS54 | — | — | — | — | — | — | — | — | — | — | 0.33 |
— |
chr2 | 65924170 | 65930343 | chr2:65924170-65930343:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.3 |
0.85 |
0.97 |
0.18 |
0.89 |
0.76 |
0.45 |
0.84 |
0.96 |
0.93 |
0.8 |
0.82 |
chr2 | 66138949 | 66144939 | chr2:66138949-66144939:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.88 |
0.93 |
0.4 |
0.89 |
0.73 |
0.35 |
0.79 |
0.97 |
0.93 |
0.7 |
0.54 |
chr2 | 66206329 | 66212369 | chr2:66206329-66212369:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.76 |
0.94 |
0.69 |
0.94 |
0.82 |
0.83 |
0.89 |
0.95 |
0.93 |
0.85 |
0.86 |
chr2 | 66391130 | 66397150 | chr2:66391130-66397150:+:L1PA2:REF | L1PA2 | REF | full-length | LINC01873 | 0.02 |
0.13 |
0.92 |
0.17 |
0.17 |
0.84 |
0.16 |
0.83 |
0.85 |
0.02 |
0.87 |
0.83 |
chr2 | 66627088 | 66633235 | chr2:66627088-66633235:-:L1PA3:REF | L1PA3 | REF | full-length | LINC01798 | 0.08 |
0.9 |
0.95 |
0.69 |
0.9 |
0.87 |
0.75 |
0.97 |
0.97 |
0.94 |
0.96 |
0.71 |
chr2 | 66642648 | 66648743 | chr2:66642648-66648743:-:L1PA4:REF | L1PA4 | REF | full-length | LINC01798 | 0.01 |
0.58 |
0.65 |
0.26 |
0.62 |
0.73 |
0.15 |
0.93 |
0.75 |
0.7 |
0.72 |
0.2 |
chr2 | 67356064 | 67362249 | chr2:67356064-67362249:+:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.84 |
0.94 |
1.0 |
0.96 |
0.96 |
0.67 |
0.96 |
0.96 |
0.86 |
0.95 |
0.95 |
chr2 | 67654064 | 67656506 | chr2:67654064-67656506:+:L1P1:REF | L1P1 | REF | 3prime-truncated | — | 0.01 |
0.94 |
0.98 |
0.91 |
0.9 |
0.95 |
0.56 |
0.97 |
0.94 |
0.93 |
0.97 |
0.6 |
chr2 | 67738970 | 67745083 | chr2:67738970-67745083:-:L1PA6:REF | L1PA6 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.0 |
— |
chr2 | 68404900 | 68411339 | chr2:68404900-68411339:+:L1PA7:REF | L1PA7 | REF | full-length | PLEK | 0.12 |
0.71 |
0.81 |
0.18 |
0.8 |
0.48 |
0.54 |
0.67 |
0.93 |
0.69 |
0.56 |
0.77 |
chr2 | 68677861 | 68680074 | chr2:68677861-68680074:-:L1PA3:REF | L1PA3 | REF | 3prime-truncated | — | 0.1 |
0.91 |
0.94 |
0.64 |
0.15 |
0.76 |
0.8 |
0.89 |
0.88 |
0.84 |
0.81 |
0.85 |
chr2 | 68941762 | 68941764 | chr2:68941762-68941764:-:L1HS:NONREF | L1HS | KNR | — | GKN2 | — | — | — | 0.91 |
— | — | — | — | — | — | — | — |
chr2 | 71245812 | 71251556 | chr2:71245812-71251556:-:L1PA6:REF | L1PA6 | REF | 3prime-truncated | — | 0.01 |
0.96 |
0.92 |
0.13 |
0.79 |
0.43 |
0.15 |
0.49 |
0.84 |
0.84 |
0.45 |
0.92 |
chr2 | 71411474 | 71417501 | chr2:71411474-71417501:-:L1HS:REF | L1HS | REF | full-length | ZNF638 | 0.34 |
0.01 |
0.01 |
0.38 |
0.03 |
0.76 |
0.82 |
0.5 |
0.08 |
0.01 |
0.15 |
0.99 |
chr2 | 71978243 | 71978637 | chr2:71978243-71978637:-:L1P2:REF | L1P2 | REF | 3prime-truncated | — | 0.02 |
— | 0.66 |
— | — | 0.72 |
0.48 |
— | — | 0.32 |
0.7 |
— |
chr2 | 72015949 | 72021960 | chr2:72015949-72021960:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.93 |
0.92 |
0.86 |
0.87 |
0.92 |
0.82 |
0.77 |
0.87 |
0.89 |
0.84 |
0.92 |
chr2 | 72063975 | 72069997 | chr2:72063975-72069997:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.12 |
0.56 |
0.91 |
0.89 |
0.65 |
0.86 |
0.88 |
0.83 |
0.96 |
0.8 |
0.83 |
0.97 |
chr2 | 72297500 | 72300986 | chr2:72297500-72300986:-:L1P2:REF | L1P2 | REF | 3prime-truncated | EXOC6B | 0.02 |
— | — | — | — | — | 0.87 |
— | — | 0.49 |
0.88 |
— |
chr2 | 72403730 | 72409869 | chr2:72403730-72409869:+:L1PA4:REF | L1PA4 | REF | full-length | EXOC6B | 0.08 |
0.98 |
0.94 |
0.94 |
0.94 |
0.97 |
0.98 |
0.98 |
0.97 |
0.94 |
0.98 |
0.97 |
chr2 | 73460454 | 73466651 | chr2:73460454-73466651:+:L1PA4:REF | L1PA4 | REF | full-length | ALMS1 | 0.92 |
0.97 |
0.97 |
0.97 |
0.95 |
0.97 |
0.98 |
0.98 |
0.97 |
0.96 |
0.98 |
0.98 |
chr2 | 73480076 | 73486099 | chr2:73480076-73486099:-:L1PA2:REF | L1PA2 | REF | full-length | ALMS1 | 0.74 |
0.93 |
0.98 |
0.9 |
0.9 |
0.97 |
0.95 |
0.93 |
0.91 |
0.97 |
0.98 |
0.98 |
chr2 | 73645335 | 73648341 | chr2:73645335-73648341:-:L1P1:REF | L1P1 | REF | 3prime-truncated | ALMS1P1 | 0.02 |
0.84 |
0.91 |
0.88 |
0.73 |
0.87 |
0.84 |
0.78 |
0.86 |
0.86 |
0.84 |
0.8 |