Chr | Start | End | Name | Family | Ref | Integrity | Closest gene | K562 | MCF7 | HEK293 | HeLaS3 | 2102Ep | BJ | HepG2 | IMR90 | H1 | HEK293T | MRC5 | HCT116 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX | 117555691 | 117561795 | chrX:117555691-117561795:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.84 |
0.56 |
0.73 |
0.85 |
0.51 |
0.64 |
0.5 |
0.93 |
0.06 |
0.47 |
0.94 |
chrX | 117727933 | 117733746 | chrX:117727933-117733746:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.89 |
0.67 |
0.74 |
0.26 |
0.72 |
0.77 |
0.58 |
0.88 |
0.56 |
0.79 |
0.93 |
chrX | 117757179 | 117763331 | chrX:117757179-117763331:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | — | 0.66 |
— | 0.97 |
— | 0.79 |
— | — | 0.35 |
0.72 |
— |
chrX | 117827446 | 117833592 | chrX:117827446-117833592:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.84 |
0.64 |
0.62 |
0.87 |
0.73 |
0.47 |
0.71 |
0.91 |
0.52 |
0.68 |
0.93 |
chrX | 117873996 | 117880023 | chrX:117873996-117880023:-:L1PA2:REF | L1PA2 | REF | full-length | — | — | 0.7 |
0.67 |
— | 0.57 |
0.64 |
0.66 |
0.7 |
— | 0.56 |
0.75 |
0.85 |
chrX | 118241706 | 118247865 | chrX:118241706-118247865:+:L1PA4:REF | L1PA4 | REF | full-length | — | — | 0.65 |
0.5 |
0.65 |
0.66 |
0.91 |
0.54 |
0.75 |
— | 0.35 |
0.52 |
1.0 |
chrX | 119435468 | 119441493 | chrX:119435468-119441493:-:L1HS:REF | L1HS | REF | full-length | SLC25A43 | 0.02 |
0.65 |
0.9 |
0.98 |
0.08 |
0.98 |
0.98 |
0.75 |
0.81 |
0.25 |
0.98 |
0.98 |
chrX | 119961489 | 119963610 | chrX:119961489-119963610:+:L1PA5:REF | L1PA5 | REF | 3prime-truncated | — | — | — | 0.46 |
— | — | — | — | — | — | — | — | — |
chrX | 120827144 | 120833523 | chrX:120827144-120833523:-:L1PA8:REF | L1PA8 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.28 |
— |
chrX | 121473835 | 121475357 | chrX:121473835-121475357:-:L1PA7:REF | L1PA7 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.01 |
— |
chrX | 121531198 | 121537361 | chrX:121531198-121537361:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.49 |
0.86 |
0.57 |
0.63 |
0.88 |
0.74 |
0.57 |
0.66 |
0.91 |
0.31 |
0.66 |
0.97 |
chrX | 121877356 | 121883520 | chrX:121877356-121883520:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.44 |
0.96 |
0.86 |
0.77 |
— | 0.98 |
0.93 |
0.86 |
— | 0.73 |
0.83 |
0.98 |
chrX | 123648005 | 123654416 | chrX:123648005-123654416:+:L1PA7:REF | L1PA7 | REF | full-length | THOC2 | — | 0.35 |
0.43 |
— | — | — | 0.7 |
0.68 |
— | 0.14 |
0.63 |
— |
chrX | 124104425 | 124110535 | chrX:124104425-124110535:-:L1PA4:REF | L1PA4 | REF | full-length | STAG2 | 0.89 |
0.93 |
0.67 |
0.95 |
0.9 |
0.97 |
0.94 |
0.77 |
0.96 |
0.67 |
0.99 |
0.87 |
chrX | 124582570 | 124588702 | chrX:124582570-124588702:+:L1PA3:REF | L1PA3 | REF | full-length | TENM1 | 0.61 |
0.42 |
0.59 |
0.37 |
0.89 |
0.81 |
0.86 |
0.82 |
0.96 |
0.4 |
0.64 |
0.86 |
chrX | 124751493 | 124757642 | chrX:124751493-124757642:-:L1PA3:REF | L1PA3 | REF | full-length | TENM1 | 0.9 |
0.77 |
0.68 |
0.22 |
0.93 |
0.74 |
0.81 |
0.76 |
0.95 |
0.47 |
0.81 |
0.84 |
chrX | 125608955 | 125614969 | chrX:125608955-125614969:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.31 |
0.61 |
0.81 |
0.77 |
0.14 |
0.82 |
0.87 |
0.72 |
0.88 |
0.65 |
0.8 |
0.91 |
chrX | 125838860 | 125845012 | chrX:125838860-125845012:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.48 |
0.62 |
0.42 |
0.92 |
0.73 |
0.51 |
0.77 |
0.95 |
0.43 |
0.71 |
0.85 |
chrX | 125917350 | 125923787 | chrX:125917350-125923787:-:L1PA8:REF | L1PA8 | REF | full-length | — | 0.02 |
0.02 |
0.0 |
0.03 |
0.82 |
0.42 |
0.0 |
0.37 |
0.87 |
0.02 |
0.39 |
0.12 |
chrX | 126104124 | 126110137 | chrX:126104124-126110137:-:L1PA3:REF | L1PA3 | REF | full-length | LOC101928495 | 0.03 |
0.12 |
0.62 |
0.6 |
0.05 |
0.7 |
0.77 |
0.67 |
0.94 |
0.45 |
0.65 |
0.7 |
chrX | 126185218 | 126191252 | chrX:126185218-126191252:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.71 |
0.59 |
0.55 |
0.9 |
0.75 |
0.69 |
0.78 |
0.97 |
0.47 |
0.81 |
0.76 |
chrX | 126229456 | 126235427 | chrX:126229456-126235427:-:L1PA3:REF | L1PA3 | REF | full-length | — | — | 0.54 |
0.55 |
— | 0.94 |
0.52 |
0.9 |
0.72 |
— | 0.43 |
0.72 |
0.88 |
chrX | 126459945 | 126460670 | chrX:126459945-126460670:+:L1PA4:REF | L1PA4 | REF | 3prime-truncated | — | 0.0 |
0.67 |
0.56 |
0.52 |
0.07 |
0.74 |
0.02 |
0.58 |
0.16 |
0.47 |
0.77 |
0.77 |
chrX | 126946790 | 126952887 | chrX:126946790-126952887:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.0 |
0.31 |
0.22 |
0.04 |
0.85 |
0.29 |
0.01 |
0.28 |
0.79 |
0.02 |
0.23 |
0.1 |
chrX | 127116697 | 127122729 | chrX:127116697-127122729:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.73 |
0.54 |
0.52 |
0.36 |
0.73 |
0.69 |
0.62 |
0.88 |
0.49 |
0.7 |
0.74 |
chrX | 127250463 | 127256492 | chrX:127250463-127256492:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.02 |
0.75 |
0.67 |
0.66 |
0.4 |
0.81 |
0.79 |
0.73 |
0.87 |
0.57 |
0.76 |
0.86 |
chrX | 127362223 | 127368248 | chrX:127362223-127368248:+:L1HS:REF | L1HS | REF | full-length | — | 0.02 |
0.77 |
0.61 |
0.65 |
0.62 |
0.78 |
0.75 |
0.65 |
0.91 |
0.5 |
0.8 |
0.9 |
chrX | 127788799 | 127794900 | chrX:127788799-127794900:+:L1PA4:REF | L1PA4 | REF | full-length | — | 0.0 |
0.35 |
0.27 |
0.03 |
0.77 |
0.35 |
0.33 |
0.33 |
0.71 |
0.35 |
0.36 |
0.13 |
chrX | 128669036 | 128675516 | chrX:128669036-128675516:-:L1PA7:REF | L1PA7 | REF | full-length | — | — | — | — | — | — | — | — | — | — | — | 0.02 |
— |
chrX | 128732737 | 128738890 | chrX:128732737-128738890:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.33 |
0.24 |
0.11 |
0.88 |
0.46 |
0.4 |
0.51 |
0.88 |
0.06 |
0.45 |
0.21 |
chrX | 128782654 | 128788670 | chrX:128782654-128788670:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.01 |
0.62 |
0.67 |
0.82 |
0.09 |
0.84 |
0.96 |
0.73 |
0.91 |
0.52 |
0.8 |
0.92 |
chrX | 129337055 | 129343063 | chrX:129337055-129343063:+:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.06 |
0.4 |
0.72 |
0.37 |
0.79 |
0.89 |
0.56 |
0.19 |
0.51 |
0.69 |
0.94 |
chrX | 130517377 | 130523407 | chrX:130517377-130523407:+:L1HS:REF | L1HS | REF | full-length | — | 0.45 |
0.92 |
0.85 |
0.84 |
0.13 |
0.89 |
0.95 |
0.61 |
0.9 |
0.82 |
0.88 |
0.96 |
chrX | 130567667 | 130573661 | chrX:130567667-130573661:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.46 |
0.9 |
0.84 |
0.87 |
0.47 |
0.96 |
0.96 |
0.82 |
0.93 |
0.8 |
0.92 |
0.97 |
chrX | 130958931 | 130964957 | chrX:130958931-130964957:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.49 |
0.05 |
0.39 |
0.02 |
0.02 |
0.33 |
0.02 |
0.5 |
0.01 |
0.17 |
0.06 |
0.98 |
chrX | 131123218 | 131129243 | chrX:131123218-131129243:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.02 |
0.07 |
0.59 |
0.17 |
0.51 |
0.63 |
0.53 |
0.54 |
0.85 |
— | 0.61 |
0.8 |
chrX | 131152270 | 131158293 | chrX:131152270-131158293:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.92 |
0.62 |
0.61 |
0.12 |
0.14 |
0.37 |
0.48 |
0.2 |
0.54 |
0.13 |
0.87 |
chrX | 131245544 | 131251574 | chrX:131245544-131251574:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.01 |
0.94 |
0.85 |
0.91 |
0.06 |
0.86 |
0.96 |
0.78 |
0.94 |
0.69 |
0.86 |
0.99 |
chrX | 131378334 | 131384369 | chrX:131378334-131384369:-:L1PA3:REF | L1PA3 | REF | full-length | — | 0.35 |
0.83 |
0.76 |
0.96 |
0.12 |
0.81 |
0.85 |
0.71 |
0.85 |
0.47 |
0.79 |
0.99 |
chrX | 131524490 | 131530619 | chrX:131524490-131530619:+:L1PA5:REF | L1PA5 | REF | full-length | — | 0.19 |
0.83 |
0.18 |
0.81 |
0.89 |
0.37 |
0.02 |
0.3 |
0.96 |
0.15 |
0.32 |
0.98 |
chrX | 131552691 | 131556913 | chrX:131552691-131556913:+:L1PA3:REF | L1PA3 | REF | 3prime-truncated | OR13H1 | 0.63 |
0.74 |
0.53 |
0.88 |
0.8 |
0.58 |
— | 0.61 |
— | 0.39 |
0.62 |
0.83 |
chrX | 131578680 | 131584735 | chrX:131578680-131584735:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.04 |
0.95 |
0.8 |
0.0 |
0.02 |
0.89 |
0.9 |
0.75 |
— | 0.66 |
0.89 |
0.01 |
chrX | 131655921 | 131659146 | chrX:131655921-131659146:+:L1P3:REF | L1P3 | REF | 3prime-truncated | — | — | — | — | — | — | — | — | — | — | — | 0.59 |
— |
chrX | 131663952 | 131669984 | chrX:131663952-131669984:+:L1PA2:REF | L1PA2 | REF | full-length | — | 0.02 |
0.94 |
0.79 |
0.77 |
0.14 |
0.82 |
0.63 |
0.63 |
0.77 |
0.56 |
0.81 |
0.97 |
chrX | 132156145 | 132162158 | chrX:132156145-132162158:-:L1PA2:REF | L1PA2 | REF | full-length | — | 0.21 |
0.92 |
0.78 |
0.85 |
0.43 |
0.74 |
0.89 |
0.69 |
0.67 |
0.78 |
0.69 |
0.94 |
chrX | 132244038 | 132250171 | chrX:132244038-132250171:-:L1PA4:REF | L1PA4 | REF | full-length | RAP2C-AS1 | 0.01 |
0.88 |
0.6 |
0.96 |
0.9 |
0.83 |
0.96 |
0.86 |
0.93 |
0.48 |
0.85 |
0.98 |
chrX | 132284468 | 132290617 | chrX:132284468-132290617:-:L1PA5:REF | L1PA5 | REF | full-length | RAP2C-AS1 | 0.03 |
0.9 |
0.78 |
0.95 |
0.92 |
0.93 |
0.97 |
0.84 |
0.97 |
0.66 |
0.95 |
0.96 |
chrX | 133009673 | 133015829 | chrX:133009673-133015829:+:L1PA4:REF | L1PA4 | REF | full-length | USP26 | — | — | 0.7 |
— | 0.89 |
0.83 |
0.63 |
0.81 |
— | 0.67 |
0.79 |
0.98 |
chrX | 133621186 | 133627320 | chrX:133621186-133627320:+:L1PA5:REF | L1PA5 | REF | full-length | GPC3 | 0.06 |
0.02 |
0.86 |
0.61 |
0.96 |
0.9 |
0.99 |
0.8 |
0.99 |
0.81 |
0.84 |
0.98 |
chrX | 134044163 | 134050309 | chrX:134044163-134050309:-:L1PA4:REF | L1PA4 | REF | full-length | — | 0.01 |
0.67 |
0.43 |
0.07 |
0.86 |
0.48 |
0.42 |
0.4 |
0.94 |
0.39 |
0.45 |
0.82 |